RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 GTF2E1P29083 439 aaPredicted RBP12.53□□□□□ -0.4
VRK3-215ENST00000599138 PRPF40BQ6NWY9 871 aaKnown RBP12.53□□□□□ -0.4
VRK3-215ENST00000599138 ISCA1Q9BUE6 129 aa12.53□□□□□ -0.4
VRK3-215ENST00000599138 UTP14AQ9BVJ6 771 aaKnown RBP12.53□□□□□ -0.4
VRK3-215ENST00000599138 PHAXQ9H814 394 aaKnown RBP12.53□□□□□ -0.4
VRK3-215ENST00000599138 SPINK5Q9NQ38 1064 aaPredicted RBP12.53□□□□□ -0.4
VRK3-215ENST00000599138 CACNA1SQ13698 1873 aa12.53□□□□□ -0.4
VRK3-215ENST00000599138 NFKBIEO00221 500 aa12.52□□□□□ -0.41
VRK3-215ENST00000599138 HOXA10P31260 410 aaPredicted RBP12.52□□□□□ -0.41
VRK3-215ENST00000599138 PRELPP51888 382 aa12.52□□□□□ -0.41
VRK3-215ENST00000599138 TRIM28Q13263 835 aaKnown RBP12.52□□□□□ -0.41
VRK3-215ENST00000599138 TWISTNBQ3B726 338 aaPredicted RBP12.52□□□□□ -0.41
VRK3-215ENST00000599138 C9orf131Q5VYM1 1079 aa12.52□□□□□ -0.41
VRK3-215ENST00000599138 CCDC88AQ3V6T2 1871 aa12.51□□□□□ -0.41
VRK3-215ENST00000599138 C21orf2O43822 256 aa12.51□□□□□ -0.41
VRK3-215ENST00000599138 C3orf67Q6ZVT6 689 aa12.51□□□□□ -0.41
VRK3-215ENST00000599138 VAMP4O75379 141 aa12.5□□□□□ -0.41
VRK3-215ENST00000599138 ALDH1B1P30837 517 aa12.5□□□□□ -0.41
VRK3-215ENST00000599138 RASSF7Q02833 373 aa12.5□□□□□ -0.41
VRK3-215ENST00000599138 GOLGA2Q08379 1002 aa12.5□□□□□ -0.41
VRK3-215ENST00000599138 SOGA3Q5TF21 947 aa12.5□□□□□ -0.41
VRK3-215ENST00000599138 LTBP3Q9NS15 1303 aa12.5□□□□□ -0.41
VRK3-215ENST00000599138 DICER1Q9UPY3 1922 aaKnown RBP12.49□□□□□ -0.41
VRK3-215ENST00000599138 SH3TC1Q8TE82 1336 aa12.49□□□□□ -0.41
VRK3-215ENST00000599138 LMNB1P20700 586 aa12.49□□□□□ -0.41
VRK3-215ENST00000599138 EXOSC9Q06265 439 aaKnown RBP12.49□□□□□ -0.41
VRK3-215ENST00000599138 SYNE4Q8N205 404 aa12.49□□□□□ -0.41
VRK3-215ENST00000599138 CRAMP1Q96RY5 1269 aa12.49□□□□□ -0.41
VRK3-215ENST00000599138 MYH16Q9H6N6 1097 aa12.49□□□□□ -0.41
VRK3-215ENST00000599138 RNF181Q9P0P0 153 aa12.49□□□□□ -0.41
VRK3-215ENST00000599138 TRMT112Q9UI30 125 aaKnown RBP12.49□□□□□ -0.41
VRK3-215ENST00000599138 LAMB2P55268 1798 aa12.48□□□□□ -0.41
VRK3-215ENST00000599138 SNED1Q8TER0 1413 aa12.48□□□□□ -0.41
VRK3-215ENST00000599138 ZC3H4Q9UPT8 1303 aaKnown RBP12.48□□□□□ -0.41
VRK3-215ENST00000599138 ATP5J2-PTCD1G3V325 749 aa12.48□□□□□ -0.41
VRK3-215ENST00000599138 RIC3Q7Z5B4 369 aa12.48□□□□□ -0.41
VRK3-215ENST00000599138 NLRP3Q96P20 1036 aa12.48□□□□□ -0.41
VRK3-215ENST00000599138 STK31Q9BXU1 1019 aa12.48□□□□□ -0.41
VRK3-215ENST00000599138 GPBP1L1Q9HC44 474 aaPredicted RBP12.48□□□□□ -0.41
VRK3-215ENST00000599138 ZNF219Q9P2Y4 722 aaPredicted RBP12.48□□□□□ -0.41
VRK3-215ENST00000599138 TCERG1O14776 1098 aaKnown RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 DDX58O95786 925 aaKnown RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 SLC4A2P04920 1241 aa12.47□□□□□ -0.41
VRK3-215ENST00000599138 HCLS1P14317 486 aaPredicted RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 CCDC93Q567U6 631 aa12.47□□□□□ -0.41
VRK3-215ENST00000599138 KSR2Q6VAB6 950 aa12.47□□□□□ -0.41
VRK3-215ENST00000599138 G2E3Q7L622 706 aa12.47□□□□□ -0.41
VRK3-215ENST00000599138 RPGRQ92834 1020 aaKnown RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 RBM17Q96I25 401 aaKnown RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 METTL22Q9BUU2 404 aaPredicted RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 TAOK3Q9H2K8 898 aa12.47□□□□□ -0.41
VRK3-215ENST00000599138 DDX60Q8IY21 1712 aaKnown RBP12.47□□□□□ -0.41
VRK3-215ENST00000599138 PI4KAP2A4QPH2 592 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 DIEXFQ68CQ4 756 aaKnown RBP12.46□□□□□ -0.41
VRK3-215ENST00000599138 OLFM4Q6UX06 510 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 PI4KAP1Q8N8J0 262 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 CCDC191Q8NCU4 936 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 FAM89AQ96GI7 184 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 MYD88Q99836 296 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 MAP3K2Q9Y2U5 619 aa12.46□□□□□ -0.41
VRK3-215ENST00000599138 FLIIQ13045 1269 aa12.45□□□□□ -0.42
VRK3-215ENST00000599138 SF3B3Q15393 1217 aaKnown RBP12.45□□□□□ -0.42
VRK3-215ENST00000599138 CC2D2BQ6DHV5 1058 aa12.45□□□□□ -0.42
VRK3-215ENST00000599138 RTKN2Q8IZC4 609 aa12.45□□□□□ -0.42
VRK3-215ENST00000599138 ZBTB38Q8NAP3 1195 aaPredicted RBP12.45□□□□□ -0.42
VRK3-215ENST00000599138 ZNF526Q8TF50 670 aaPredicted RBP12.45□□□□□ -0.42
VRK3-215ENST00000599138 ABCC4O15439 1325 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 E9PSI1 815 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 KIF3CO14782 793 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 PCCAP05165 728 aaPredicted RBP12.44□□□□□ -0.42
VRK3-215ENST00000599138 IGKV5-2P06315 115 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 FKBP4Q02790 459 aaKnown RBP eCLIP12.44□□□□□ -0.42
VRK3-215ENST00000599138 SLFN5Q08AF3 891 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 ZNF428Q96B54 188 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 PSMD1Q99460 953 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 TIAM2Q8IVF5 1701 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 TAF1P21675 1872 aa12.44□□□□□ -0.42
VRK3-215ENST00000599138 IRS4O14654 1257 aaPredicted RBP12.43□□□□□ -0.42
VRK3-215ENST00000599138 PPEF1O14829 653 aaPredicted RBP12.43□□□□□ -0.42
VRK3-215ENST00000599138 BBOX1O75936 387 aa12.43□□□□□ -0.42
VRK3-215ENST00000599138 C1QTNF8P60827 252 aa12.43□□□□□ -0.42
VRK3-215ENST00000599138 GRIPAP1Q4V328 841 aa12.43□□□□□ -0.42
VRK3-215ENST00000599138 TRMT2AQ8IZ69 625 aaKnown RBP12.43□□□□□ -0.42
VRK3-215ENST00000599138 MIER1Q8N108 512 aa12.43□□□□□ -0.42
VRK3-215ENST00000599138 CWC25Q9NXE8 425 aaPredicted RBP12.43□□□□□ -0.42
VRK3-215ENST00000599138 GLTPD2A6NH11 291 aa12.42□□□□□ -0.42
VRK3-215ENST00000599138 GRAPQ13588 217 aa12.42□□□□□ -0.42
VRK3-215ENST00000599138 DDX46Q7L014 1031 aaKnown RBP12.42□□□□□ -0.42
VRK3-215ENST00000599138 SLC51AQ86UW1 340 aa12.42□□□□□ -0.42
VRK3-215ENST00000599138 GRAPLQ8TC17 118 aaPredicted RBP12.42□□□□□ -0.42
VRK3-215ENST00000599138 NMRK2Q9NPI5 230 aa12.42□□□□□ -0.42
VRK3-215ENST00000599138 ATP6V0A2Q9Y487 856 aa12.42□□□□□ -0.42
VRK3-215ENST00000599138 KDM2BQ8NHM5 1336 aa12.41□□□□□ -0.42
VRK3-215ENST00000599138 CDHR2Q9BYE9 1310 aa12.41□□□□□ -0.42
VRK3-215ENST00000599138 NEURL1BA8MQ27 555 aa12.41□□□□□ -0.42
VRK3-215ENST00000599138 HSP90B1P14625 803 aaKnown RBP12.41□□□□□ -0.42
VRK3-215ENST00000599138 NEXNQ0ZGT2 675 aa12.41□□□□□ -0.42
VRK3-215ENST00000599138 FKBP5Q13451 457 aaPredicted RBP12.41□□□□□ -0.42
VRK3-215ENST00000599138 RTL5Q5HYW3 569 aaPredicted RBP12.41□□□□□ -0.42
VRK3-215ENST00000599138 SP8Q8IXZ3 490 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms