RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CACNA1SQ13698 1873 aa14.21□□□□□ -0.14
LIG1-211ENST00000596457 PDE6BP35913 854 aa14.2□□□□□ -0.14
LIG1-211ENST00000596457 APLP1P51693 650 aa14.2□□□□□ -0.14
LIG1-211ENST00000596457 ERFEQ4G0M1 354 aa14.2□□□□□ -0.14
LIG1-211ENST00000596457 BRIP1Q9BX63 1249 aa14.2□□□□□ -0.14
LIG1-211ENST00000596457 PIM2Q9P1W9 311 aa14.2□□□□□ -0.14
LIG1-211ENST00000596457 KCNA3P22001 575 aa14.19□□□□□ -0.14
LIG1-211ENST00000596457 PARP10Q53GL7 1025 aa14.19□□□□□ -0.14
LIG1-211ENST00000596457 DNAJC5GQ8N7S2 189 aa14.19□□□□□ -0.14
LIG1-211ENST00000596457 UTP14AQ9BVJ6 771 aaKnown RBP14.19□□□□□ -0.14
LIG1-211ENST00000596457 MAP3K2Q9Y2U5 619 aa14.19□□□□□ -0.14
LIG1-211ENST00000596457 CACNA1FO60840 1977 aa14.19□□□□□ -0.14
LIG1-211ENST00000596457 PI4KAP2A4QPH2 592 aa14.18□□□□□ -0.14
LIG1-211ENST00000596457 FKBP5Q13451 457 aaPredicted RBP14.18□□□□□ -0.14
LIG1-211ENST00000596457 RTL5Q5HYW3 569 aaPredicted RBP14.18□□□□□ -0.14
LIG1-211ENST00000596457 NLRP10Q86W26 655 aa14.18□□□□□ -0.14
LIG1-211ENST00000596457 PI4KAP1Q8N8J0 262 aa14.18□□□□□ -0.14
LIG1-211ENST00000596457 ZNF219Q9P2Y4 722 aaPredicted RBP14.18□□□□□ -0.14
LIG1-211ENST00000596457 TRMT112Q9UI30 125 aaKnown RBP14.18□□□□□ -0.14
LIG1-211ENST00000596457 BRCA1P38398 1863 aaKnown RBP14.18□□□□□ -0.14
LIG1-211ENST00000596457 NTSR2O95665 410 aa14.17□□□□□ -0.14
LIG1-211ENST00000596457 FLIIQ13045 1269 aa14.17□□□□□ -0.14
LIG1-211ENST00000596457 DALRD3Q5D0E6 543 aaKnown RBP14.17□□□□□ -0.14
LIG1-211ENST00000596457 KSR2Q6VAB6 950 aa14.17□□□□□ -0.14
LIG1-211ENST00000596457 PDZRN3Q9UPQ7 1066 aa14.17□□□□□ -0.14
LIG1-211ENST00000596457 COL11A2P13942 1736 aaPredicted RBP14.17□□□□□ -0.14
LIG1-211ENST00000596457 DLEC1Q9Y238 1755 aa14.17□□□□□ -0.14
LIG1-211ENST00000596457 ARFGEF1Q9Y6D6 1849 aa14.16□□□□□ -0.14
LIG1-211ENST00000596457 TRMT2AQ8IZ69 625 aaKnown RBP14.16□□□□□ -0.14
LIG1-211ENST00000596457 SYNE4Q8N205 404 aa14.16□□□□□ -0.14
LIG1-211ENST00000596457 ISCA1Q9BUE6 129 aa14.16□□□□□ -0.14
LIG1-211ENST00000596457 METTL22Q9BUU2 404 aaPredicted RBP14.16□□□□□ -0.14
LIG1-211ENST00000596457 BCL2L13Q9BXK5 485 aa14.16□□□□□ -0.14
LIG1-211ENST00000596457 ABCC12Q96J65 1359 aa14.16□□□□□ -0.14
LIG1-211ENST00000596457 TNRC6CQ9HCJ0 1690 aaKnown RBP14.15□□□□□ -0.14
LIG1-211ENST00000596457 HCLS1P14317 486 aaPredicted RBP14.15□□□□□ -0.14
LIG1-211ENST00000596457 NEXNQ0ZGT2 675 aa14.15□□□□□ -0.14
LIG1-211ENST00000596457 ARHGAP27Q6ZUM4 889 aa14.15□□□□□ -0.14
LIG1-211ENST00000596457 TTLL6Q8N841 843 aa14.15□□□□□ -0.14
LIG1-211ENST00000596457 JARID2Q92833 1246 aaPredicted RBP14.15□□□□□ -0.14
LIG1-211ENST00000596457 ADCY9O60503 1353 aa14.14□□□□□ -0.15
LIG1-211ENST00000596457 MRPL50Q8N5N7 158 aaKnown RBP14.14□□□□□ -0.15
LIG1-211ENST00000596457 FAM89AQ96GI7 184 aa14.14□□□□□ -0.15
LIG1-211ENST00000596457 MASTLQ96GX5 879 aa14.14□□□□□ -0.15
LIG1-211ENST00000596457 SH3TC1Q8TE82 1336 aa14.14□□□□□ -0.15
LIG1-211ENST00000596457 IBTKQ9P2D0 1353 aaPredicted RBP14.13□□□□□ -0.15
LIG1-211ENST00000596457 F6X3S4 739 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 SRGNP10124 158 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 NPR1P16066 1061 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 CWF19L2Q2TBE0 894 aaKnown RBP14.13□□□□□ -0.15
LIG1-211ENST00000596457 DNAAF4Q8WXU2 420 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 SSH1Q8WYL5 1049 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 RPGRQ92834 1020 aaKnown RBP14.13□□□□□ -0.15
LIG1-211ENST00000596457 NLRP3Q96P20 1036 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 CWC25Q9NXE8 425 aaPredicted RBP14.13□□□□□ -0.15
LIG1-211ENST00000596457 LAMB2P55268 1798 aa14.13□□□□□ -0.15
LIG1-211ENST00000596457 STYK1Q6J9G0 422 aa14.12□□□□□ -0.15
LIG1-211ENST00000596457 SLC4A10Q6U841 1118 aa14.12□□□□□ -0.15
LIG1-211ENST00000596457 C3orf67Q6ZVT6 689 aa14.12□□□□□ -0.15
LIG1-211ENST00000596457 CNKSR1Q969H4 720 aa14.12□□□□□ -0.15
LIG1-211ENST00000596457 SMC4Q9NTJ3 1288 aa14.12□□□□□ -0.15
LIG1-211ENST00000596457 SLX4Q8IY92 1834 aa14.12□□□□□ -0.15
LIG1-211ENST00000596457 C21orf2O43822 256 aa14.11□□□□□ -0.15
LIG1-211ENST00000596457 IGKV5-2P06315 115 aa14.11□□□□□ -0.15
LIG1-211ENST00000596457 TRIM28Q13263 835 aaKnown RBP14.11□□□□□ -0.15
LIG1-211ENST00000596457 SLC10A5Q5PT55 438 aa14.11□□□□□ -0.15
LIG1-211ENST00000596457 DDX60Q8IY21 1712 aaKnown RBP14.11□□□□□ -0.15
LIG1-211ENST00000596457 CCDC191Q8NCU4 936 aa14.11□□□□□ -0.15
LIG1-211ENST00000596457 RBM17Q96I25 401 aaKnown RBP14.11□□□□□ -0.15
LIG1-211ENST00000596457 ZBED9Q6R2W3 1325 aa14.11□□□□□ -0.15
LIG1-211ENST00000596457 WDR90Q96KV7 1748 aa14.1□□□□□ -0.15
LIG1-211ENST00000596457 KLRG2A4D1S0 409 aaPredicted RBP14.1□□□□□ -0.15
LIG1-211ENST00000596457 IRS4O14654 1257 aaPredicted RBP14.1□□□□□ -0.15
LIG1-211ENST00000596457 ALDH1B1P30837 517 aa14.1□□□□□ -0.15
LIG1-211ENST00000596457 ALDH1L2Q3SY69 923 aa14.1□□□□□ -0.15
LIG1-211ENST00000596457 PRPF40BQ6NWY9 871 aaKnown RBP14.1□□□□□ -0.15
LIG1-211ENST00000596457 RNF123Q5XPI4 1314 aa14.1□□□□□ -0.15
LIG1-211ENST00000596457 NEURL1BA8MQ27 555 aa14.09□□□□□ -0.15
LIG1-211ENST00000596457 ZBTB38Q8NAP3 1195 aaPredicted RBP14.09□□□□□ -0.15
LIG1-211ENST00000596457 YTHDC1Q96MU7 727 aaKnown RBP14.09□□□□□ -0.15
LIG1-211ENST00000596457 TAF1P21675 1872 aa14.09□□□□□ -0.15
LIG1-211ENST00000596457 PCCAP05165 728 aaPredicted RBP14.08□□□□□ -0.16
LIG1-211ENST00000596457 CT47B1P0C2W7 299 aaPredicted RBP14.08□□□□□ -0.16
LIG1-211ENST00000596457 CCDC85AQ96PX6 553 aaPredicted RBP14.08□□□□□ -0.16
LIG1-211ENST00000596457 CCDC88AQ3V6T2 1871 aa14.08□□□□□ -0.16
LIG1-211ENST00000596457 RIC1Q4ADV7 1423 aa14.07□□□□□ -0.16
LIG1-211ENST00000596457 KIF3CO14782 793 aa14.07□□□□□ -0.16
LIG1-211ENST00000596457 RARSP54136 660 aaKnown RBP14.07□□□□□ -0.16
LIG1-211ENST00000596457 RASSF7Q02833 373 aa14.07□□□□□ -0.16
LIG1-211ENST00000596457 CRY2Q49AN0 593 aa14.07□□□□□ -0.16
LIG1-211ENST00000596457 OLFM4Q6UX06 510 aa14.07□□□□□ -0.16
LIG1-211ENST00000596457 DDX46Q7L014 1031 aaKnown RBP14.07□□□□□ -0.16
LIG1-211ENST00000596457 LINS1Q8NG48 757 aa14.07□□□□□ -0.16
LIG1-211ENST00000596457 NOB1Q9ULX3 412 aaKnown RBP14.07□□□□□ -0.16
LIG1-211ENST00000596457 GCKRQ14397 625 aa14.06□□□□□ -0.16
LIG1-211ENST00000596457 BEND3Q5T5X7 828 aa14.06□□□□□ -0.16
LIG1-211ENST00000596457 UBE3BQ7Z3V4 1068 aa14.06□□□□□ -0.16
LIG1-211ENST00000596457 KLRG1Q96E93 195 aa14.06□□□□□ -0.16
LIG1-211ENST00000596457 PTPRCP08575 1304 aa14.06□□□□□ -0.16
LIG1-211ENST00000596457 PCNTO95613 3336 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms