RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TRMT112Q9UI30 125 aaKnown RBP19.23■□□□□ 0.67
UPF1-202ENST00000594243 PI4KAP2A4QPH2 592 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 ATP5J2-PTCD1G3V325 749 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 FLIIQ13045 1269 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 SLC10A5Q5PT55 438 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 STYK1Q6J9G0 422 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 G2E3Q7L622 706 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 PI4KAP1Q8N8J0 262 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 CNKSR1Q969H4 720 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 ZNF428Q96B54 188 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 MYD88Q99836 296 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 METTL22Q9BUU2 404 aaPredicted RBP19.22■□□□□ 0.67
UPF1-202ENST00000594243 MAP3K2Q9Y2U5 619 aa19.22■□□□□ 0.67
UPF1-202ENST00000594243 NPR1P16066 1061 aa19.21■□□□□ 0.67
UPF1-202ENST00000594243 NLRP3Q96P20 1036 aa19.21■□□□□ 0.67
UPF1-202ENST00000594243 SH3TC1Q8TE82 1336 aa19.21■□□□□ 0.67
UPF1-202ENST00000594243 GOLGB1Q14789 3259 aaKnown RBP19.2■□□□□ 0.66
UPF1-202ENST00000594243 ANKRD31Q8N7Z5 1873 aa19.2■□□□□ 0.66
UPF1-202ENST00000594243 ANKRD36CQ5JPF3 1778 aa19.2■□□□□ 0.66
UPF1-202ENST00000594243 NEXNQ0ZGT2 675 aa19.2■□□□□ 0.66
UPF1-202ENST00000594243 FKBP5Q13451 457 aaPredicted RBP19.2■□□□□ 0.66
UPF1-202ENST00000594243 RIC1Q4ADV7 1423 aa19.19■□□□□ 0.66
UPF1-202ENST00000594243 CT47B1P0C2W7 299 aaPredicted RBP19.19■□□□□ 0.66
UPF1-202ENST00000594243 ALDH1B1P30837 517 aa19.19■□□□□ 0.66
UPF1-202ENST00000594243 ARHGAP27Q6ZUM4 889 aa19.19■□□□□ 0.66
UPF1-202ENST00000594243 CCDC191Q8NCU4 936 aa19.19■□□□□ 0.66
UPF1-202ENST00000594243 BRCA1P38398 1863 aaKnown RBP19.18■□□□□ 0.66
UPF1-202ENST00000594243 CRY2Q49AN0 593 aa19.18■□□□□ 0.66
UPF1-202ENST00000594243 ARFGEF2Q9Y6D5 1785 aa19.18■□□□□ 0.66
UPF1-202ENST00000594243 ABCC12Q96J65 1359 aa19.18■□□□□ 0.66
UPF1-202ENST00000594243 DLEC1Q9Y238 1755 aa19.17■□□□□ 0.66
UPF1-202ENST00000594243 RPGRQ92834 1020 aaKnown RBP19.17■□□□□ 0.66
UPF1-202ENST00000594243 CWC25Q9NXE8 425 aaPredicted RBP19.17■□□□□ 0.66
UPF1-202ENST00000594243 ADCY9O60503 1353 aa19.17■□□□□ 0.66
UPF1-202ENST00000594243 HSP90B1P14625 803 aaKnown RBP19.16■□□□□ 0.66
UPF1-202ENST00000594243 ALDH1L2Q3SY69 923 aa19.16■□□□□ 0.66
UPF1-202ENST00000594243 ZBTB38Q8NAP3 1195 aaPredicted RBP19.16■□□□□ 0.66
UPF1-202ENST00000594243 DNAAF4Q8WXU2 420 aa19.16■□□□□ 0.66
UPF1-202ENST00000594243 FAM89AQ96GI7 184 aa19.16■□□□□ 0.66
UPF1-202ENST00000594243 CACNA1FO60840 1977 aa19.15■□□□□ 0.66
UPF1-202ENST00000594243 SYNE4Q8N205 404 aa19.15■□□□□ 0.66
UPF1-202ENST00000594243 RBM17Q96I25 401 aaKnown RBP19.15■□□□□ 0.66
UPF1-202ENST00000594243 HCLS1P14317 486 aaPredicted RBP19.14■□□□□ 0.65
UPF1-202ENST00000594243 HOXA10P31260 410 aaPredicted RBP19.14■□□□□ 0.65
UPF1-202ENST00000594243 SOGA3Q5TF21 947 aa19.14■□□□□ 0.65
UPF1-202ENST00000594243 PRPF40BQ6NWY9 871 aaKnown RBP19.14■□□□□ 0.65
UPF1-202ENST00000594243 MRPL50Q8N5N7 158 aaKnown RBP19.14■□□□□ 0.65
UPF1-202ENST00000594243 ARFGEF1Q9Y6D6 1849 aa19.14■□□□□ 0.65
UPF1-202ENST00000594243 C21orf2O43822 256 aa19.13■□□□□ 0.65
UPF1-202ENST00000594243 PCCAP05165 728 aaPredicted RBP19.13■□□□□ 0.65
UPF1-202ENST00000594243 IGKV5-2P06315 115 aa19.13■□□□□ 0.65
UPF1-202ENST00000594243 RTL5Q5HYW3 569 aaPredicted RBP19.13■□□□□ 0.65
UPF1-202ENST00000594243 LINS1Q8NG48 757 aa19.13■□□□□ 0.65
UPF1-202ENST00000594243 SSH1Q8WYL5 1049 aa19.13■□□□□ 0.65
UPF1-202ENST00000594243 CRAMP1Q96RY5 1269 aa19.13■□□□□ 0.65
UPF1-202ENST00000594243 ZBED9Q6R2W3 1325 aa19.13■□□□□ 0.65
UPF1-202ENST00000594243 COL11A2P13942 1736 aaPredicted RBP19.13■□□□□ 0.65
UPF1-202ENST00000594243 NEURL1BA8MQ27 555 aa19.12■□□□□ 0.65
UPF1-202ENST00000594243 IRS4O14654 1257 aaPredicted RBP19.12■□□□□ 0.65
UPF1-202ENST00000594243 ZNF219Q9P2Y4 722 aaPredicted RBP19.12■□□□□ 0.65
UPF1-202ENST00000594243 PTPRCP08575 1304 aa19.11■□□□□ 0.65
UPF1-202ENST00000594243 CWF19L2Q2TBE0 894 aaKnown RBP19.11■□□□□ 0.65
UPF1-202ENST00000594243 C3orf67Q6ZVT6 689 aa19.11■□□□□ 0.65
UPF1-202ENST00000594243 ZNF784Q8NCA9 323 aaPredicted RBP19.11■□□□□ 0.65
UPF1-202ENST00000594243 TNRC6CQ9HCJ0 1690 aaKnown RBP19.11■□□□□ 0.65
UPF1-202ENST00000594243 F6X3S4 739 aa19.1■□□□□ 0.65
UPF1-202ENST00000594243 SF3B3Q15393 1217 aaKnown RBP19.1■□□□□ 0.65
UPF1-202ENST00000594243 DDX46Q7L014 1031 aaKnown RBP19.1■□□□□ 0.65
UPF1-202ENST00000594243 SMC4Q9NTJ3 1288 aa19.1■□□□□ 0.65
UPF1-202ENST00000594243 PDE8AO60658 829 aa19.09■□□□□ 0.65
UPF1-202ENST00000594243 GCKRQ14397 625 aa19.09■□□□□ 0.65
UPF1-202ENST00000594243 C7orf43Q8WVR3 580 aa19.09■□□□□ 0.65
UPF1-202ENST00000594243 CDHR2Q9BYE9 1310 aa19.08■□□□□ 0.65
UPF1-202ENST00000594243 BBOX1O75936 387 aa19.08■□□□□ 0.64
UPF1-202ENST00000594243 CCDC93Q567U6 631 aa19.08■□□□□ 0.64
UPF1-202ENST00000594243 BEND3Q5T5X7 828 aa19.08■□□□□ 0.64
UPF1-202ENST00000594243 CC2D2BQ6DHV5 1058 aa19.08■□□□□ 0.64
UPF1-202ENST00000594243 SLC4A10Q6U841 1118 aa19.08■□□□□ 0.64
UPF1-202ENST00000594243 BCL2L13Q9BXK5 485 aa19.08■□□□□ 0.64
UPF1-202ENST00000594243 TMX4Q9H1E5 349 aaPredicted RBP19.08■□□□□ 0.64
UPF1-202ENST00000594243 H7C1W4 665 aa19.07■□□□□ 0.64
UPF1-202ENST00000594243 BRPF1P55201 1214 aaPredicted RBP19.07■□□□□ 0.64
UPF1-202ENST00000594243 GRIPAP1Q4V328 841 aa19.07■□□□□ 0.64
UPF1-202ENST00000594243 RTKN2Q8IZC4 609 aa19.07■□□□□ 0.64
UPF1-202ENST00000594243 JARID2Q92833 1246 aaPredicted RBP19.07■□□□□ 0.64
UPF1-202ENST00000594243 SLX4Q8IY92 1834 aa19.07■□□□□ 0.64
UPF1-202ENST00000594243 PPEF1O14829 653 aaPredicted RBP19.06■□□□□ 0.64
UPF1-202ENST00000594243 RARSP54136 660 aaKnown RBP19.06■□□□□ 0.64
UPF1-202ENST00000594243 SRCIN1Q9C0H9 1055 aa19.06■□□□□ 0.64
UPF1-202ENST00000594243 ABCC4O15439 1325 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 ALDH1L1O75891 902 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 LMNB1P20700 586 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 RASSF7Q02833 373 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 GRAPQ13588 217 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 CCDC152Q4G0S7 254 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 C9orf131Q5VYM1 1079 aa19.05■□□□□ 0.64
UPF1-202ENST00000594243 GRAPLQ8TC17 118 aaPredicted RBP19.05■□□□□ 0.64
UPF1-202ENST00000594243 LTBP3Q9NS15 1303 aa19.04■□□□□ 0.64
UPF1-202ENST00000594243 NFKBIEO00221 500 aa19.04■□□□□ 0.64
UPF1-202ENST00000594243 UBE3BQ7Z3V4 1068 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms