RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 TOMM70O94826 608 aa14.18□□□□□ -0.14
LIG3-214ENST00000592244 NTSR2O95665 410 aa14.18□□□□□ -0.14
LIG3-214ENST00000592244 CRY2Q49AN0 593 aa14.18□□□□□ -0.14
LIG3-214ENST00000592244 CCDC184Q52MB2 194 aa14.18□□□□□ -0.14
LIG3-214ENST00000592244 IL16Q14005 1332 aa14.17□□□□□ -0.14
LIG3-214ENST00000592244 DLEC1Q9Y238 1755 aa14.17□□□□□ -0.14
LIG3-214ENST00000592244 KIF3CO14782 793 aa14.17□□□□□ -0.14
LIG3-214ENST00000592244 DDX58O95786 925 aaKnown RBP14.17□□□□□ -0.14
LIG3-214ENST00000592244 HSP90B1P14625 803 aaKnown RBP14.17□□□□□ -0.14
LIG3-214ENST00000592244 WWC1Q8IX03 1113 aa14.17□□□□□ -0.14
LIG3-214ENST00000592244 TRMT112Q9UI30 125 aaKnown RBP14.17□□□□□ -0.14
LIG3-214ENST00000592244 SH3TC1Q8TE82 1336 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 GLTPD2A6NH11 291 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 ELL2O00472 640 aaPredicted RBP14.16□□□□□ -0.14
LIG3-214ENST00000592244 HOXA10P31260 410 aaPredicted RBP14.16□□□□□ -0.14
LIG3-214ENST00000592244 FKBP4Q02790 459 aaKnown RBP eCLIP14.16□□□□□ -0.14
LIG3-214ENST00000592244 SLC10A5Q5PT55 438 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 RIC3Q7Z5B4 369 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 NLRP10Q86W26 655 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 C7orf43Q8WVR3 580 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 CRAMP1Q96RY5 1269 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 STK31Q9BXU1 1019 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 ABCC12Q96J65 1359 aa14.16□□□□□ -0.14
LIG3-214ENST00000592244 NMRK2Q9NPI5 230 aa14.15□□□□□ -0.14
LIG3-214ENST00000592244 ANKRD31Q8N7Z5 1873 aa14.14□□□□□ -0.15
LIG3-214ENST00000592244 VEGFAP15692 232 aaPredicted RBP14.14□□□□□ -0.15
LIG3-214ENST00000592244 WDR63Q8IWG1 891 aa14.14□□□□□ -0.15
LIG3-214ENST00000592244 RBM46Q8TBY0 533 aaKnown RBP14.14□□□□□ -0.15
LIG3-214ENST00000592244 HSPA6P17066 643 aa14.13□□□□□ -0.15
LIG3-214ENST00000592244 TRIM28Q13263 835 aaKnown RBP14.13□□□□□ -0.15
LIG3-214ENST00000592244 DDX46Q7L014 1031 aaKnown RBP14.13□□□□□ -0.15
LIG3-214ENST00000592244 FAM9BQ8IZU0 186 aa14.13□□□□□ -0.15
LIG3-214ENST00000592244 C8orf58Q8NAV2 365 aa14.13□□□□□ -0.15
LIG3-214ENST00000592244 RRAGCQ9HB90 399 aa14.13□□□□□ -0.15
LIG3-214ENST00000592244 PPEF1O14829 653 aaPredicted RBP14.12□□□□□ -0.15
LIG3-214ENST00000592244 BBOX1O75936 387 aa14.12□□□□□ -0.15
LIG3-214ENST00000592244 FSTL1Q12841 308 aa14.12□□□□□ -0.15
LIG3-214ENST00000592244 JDP2Q8WYK2 163 aa14.12□□□□□ -0.15
LIG3-214ENST00000592244 PSMD1Q99460 953 aa14.12□□□□□ -0.15
LIG3-214ENST00000592244 COL11A2P13942 1736 aaPredicted RBP14.12□□□□□ -0.15
LIG3-214ENST00000592244 NUP98P52948 1817 aa14.11□□□□□ -0.15
LIG3-214ENST00000592244 HCLS1P14317 486 aaPredicted RBP14.11□□□□□ -0.15
LIG3-214ENST00000592244 TWISTNBQ3B726 338 aaPredicted RBP14.11□□□□□ -0.15
LIG3-214ENST00000592244 TMC4Q7Z404 712 aa14.11□□□□□ -0.15
LIG3-214ENST00000592244 SYNE4Q8N205 404 aa14.11□□□□□ -0.15
LIG3-214ENST00000592244 TSR2Q969E8 191 aaKnown RBP14.11□□□□□ -0.15
LIG3-214ENST00000592244 ISCA1Q9BUE6 129 aa14.11□□□□□ -0.15
LIG3-214ENST00000592244 MYH16Q9H6N6 1097 aa14.11□□□□□ -0.15
LIG3-214ENST00000592244 IQCA1LA6NCM1 817 aa14.1□□□□□ -0.15
LIG3-214ENST00000592244 ATP5J2-PTCD1G3V325 749 aa14.1□□□□□ -0.15
LIG3-214ENST00000592244 IARSP41252 1262 aaKnown RBP14.1□□□□□ -0.15
LIG3-214ENST00000592244 PRELPP51888 382 aa14.1□□□□□ -0.15
LIG3-214ENST00000592244 NEXNQ0ZGT2 675 aa14.1□□□□□ -0.15
LIG3-214ENST00000592244 SMC1BQ8NDV3 1235 aa14.1□□□□□ -0.15
LIG3-214ENST00000592244 SUPT20HQ8NEM7 779 aa14.1□□□□□ -0.15
LIG3-214ENST00000592244 ZNF277Q9NRM2 450 aaPredicted RBP14.1□□□□□ -0.15
LIG3-214ENST00000592244 SALL2Q9Y467 1007 aaPredicted RBP14.1□□□□□ -0.15
LIG3-214ENST00000592244 APLP1P51693 650 aa14.09□□□□□ -0.15
LIG3-214ENST00000592244 CCDC191Q8NCU4 936 aa14.09□□□□□ -0.15
LIG3-214ENST00000592244 VPS33BQ9H267 617 aa14.09□□□□□ -0.15
LIG3-214ENST00000592244 PHAXQ9H814 394 aaKnown RBP14.09□□□□□ -0.15
LIG3-214ENST00000592244 ATP6V0A2Q9Y487 856 aa14.09□□□□□ -0.15
LIG3-214ENST00000592244 SLX4Q8IY92 1834 aa14.08□□□□□ -0.15
LIG3-214ENST00000592244 TCERG1O14776 1098 aaKnown RBP14.08□□□□□ -0.16
LIG3-214ENST00000592244 GRAPQ13588 217 aa14.08□□□□□ -0.16
LIG3-214ENST00000592244 TSPYL6Q8N831 410 aa14.08□□□□□ -0.16
LIG3-214ENST00000592244 ZBTB38Q8NAP3 1195 aaPredicted RBP14.08□□□□□ -0.16
LIG3-214ENST00000592244 GRAPLQ8TC17 118 aaPredicted RBP14.08□□□□□ -0.16
LIG3-214ENST00000592244 FAM89AQ96GI7 184 aa14.08□□□□□ -0.16
LIG3-214ENST00000592244 MYD88Q99836 296 aa14.08□□□□□ -0.16
LIG3-214ENST00000592244 CWC25Q9NXE8 425 aaPredicted RBP14.08□□□□□ -0.16
LIG3-214ENST00000592244 ABCC4O15439 1325 aa14.08□□□□□ -0.16
LIG3-214ENST00000592244 IRS4O14654 1257 aaPredicted RBP14.07□□□□□ -0.16
LIG3-214ENST00000592244 SLC4A2P04920 1241 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 EIF6P56537 245 aaKnown RBP14.07□□□□□ -0.16
LIG3-214ENST00000592244 OLFM4Q6UX06 510 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 KSR2Q6VAB6 950 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 C3orf67Q6ZVT6 689 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 SP8Q8IXZ3 490 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 LARGE2Q8N3Y3 721 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 METTL22Q9BUU2 404 aaPredicted RBP14.07□□□□□ -0.16
LIG3-214ENST00000592244 FANCIQ9NVI1 1328 aa14.07□□□□□ -0.16
LIG3-214ENST00000592244 ARFGEF2Q9Y6D5 1785 aa14.06□□□□□ -0.16
LIG3-214ENST00000592244 SBF1O95248 1867 aa14.06□□□□□ -0.16
LIG3-214ENST00000592244 SF3B3Q15393 1217 aaKnown RBP14.06□□□□□ -0.16
LIG3-214ENST00000592244 DPP8Q6V1X1 898 aaPredicted RBP14.06□□□□□ -0.16
LIG3-214ENST00000592244 NIM1KQ8IY84 436 aa14.06□□□□□ -0.16
LIG3-214ENST00000592244 MAP3K2Q9Y2U5 619 aa14.06□□□□□ -0.16
LIG3-214ENST00000592244 TNRC6CQ9HCJ0 1690 aaKnown RBP14.05□□□□□ -0.16
LIG3-214ENST00000592244 PI4KAP2A4QPH2 592 aa14.05□□□□□ -0.16
LIG3-214ENST00000592244 DDNO94850 711 aaPredicted RBP14.05□□□□□ -0.16
LIG3-214ENST00000592244 PCCAP05165 728 aaPredicted RBP14.05□□□□□ -0.16
LIG3-214ENST00000592244 RTL5Q5HYW3 569 aaPredicted RBP14.05□□□□□ -0.16
LIG3-214ENST00000592244 MPNDQ8N594 471 aa14.05□□□□□ -0.16
LIG3-214ENST00000592244 PI4KAP1Q8N8J0 262 aa14.05□□□□□ -0.16
LIG3-214ENST00000592244 L3MBTL3Q96JM7 780 aaPredicted RBP14.05□□□□□ -0.16
LIG3-214ENST00000592244 FER1L6Q2WGJ9 1857 aa14.05□□□□□ -0.16
LIG3-214ENST00000592244 FZD9O00144 591 aa14.04□□□□□ -0.16
LIG3-214ENST00000592244 PPIP5K2O43314 1243 aa14.04□□□□□ -0.16
LIG3-214ENST00000592244 CCDC152Q4G0S7 254 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms