RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 RRAGCQ9HB90 399 aa13.82□□□□□ -0.2
VPS4B-207ENST00000591519 SRGNP10124 158 aa13.81□□□□□ -0.2
VPS4B-207ENST00000591519 STYK1Q6J9G0 422 aa13.81□□□□□ -0.2
VPS4B-207ENST00000591519 C16orf71Q8IYS4 520 aaPredicted RBP13.81□□□□□ -0.2
VPS4B-207ENST00000591519 CNBD1Q8NA66 436 aa13.81□□□□□ -0.2
VPS4B-207ENST00000591519 PNISRQ8TF01 805 aaKnown RBP13.81□□□□□ -0.2
VPS4B-207ENST00000591519 CNKSR1Q969H4 720 aa13.81□□□□□ -0.2
VPS4B-207ENST00000591519 KLRG2A4D1S0 409 aaPredicted RBP13.8□□□□□ -0.2
VPS4B-207ENST00000591519 CCDC24Q8N4L8 307 aa13.8□□□□□ -0.2
VPS4B-207ENST00000591519 PCDH10Q9P2E7 1040 aa13.8□□□□□ -0.2
VPS4B-207ENST00000591519 ZNF652Q9Y2D9 606 aa13.8□□□□□ -0.2
VPS4B-207ENST00000591519 CCDC88AQ3V6T2 1871 aa13.79□□□□□ -0.2
VPS4B-207ENST00000591519 C21orf2O43822 256 aa13.79□□□□□ -0.2
VPS4B-207ENST00000591519 NEFMP07197 916 aa13.79□□□□□ -0.2
VPS4B-207ENST00000591519 VEGFAP15692 232 aaPredicted RBP13.79□□□□□ -0.2
VPS4B-207ENST00000591519 PIP4K2AP48426 406 aaPredicted RBP13.79□□□□□ -0.2
VPS4B-207ENST00000591519 ST5P78524 1137 aa13.79□□□□□ -0.2
VPS4B-207ENST00000591519 MASTLQ96GX5 879 aa13.79□□□□□ -0.2
VPS4B-207ENST00000591519 PNNQ9H307 717 aaKnown RBP13.79□□□□□ -0.2
VPS4B-207ENST00000591519 CIZ1Q9ULV3 898 aaPredicted RBP13.79□□□□□ -0.2
VPS4B-207ENST00000591519 LTBP3Q9NS15 1303 aa13.79□□□□□ -0.2
VPS4B-207ENST00000591519 BCORQ6W2J9 1755 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 CHRM1P11229 460 aaPredicted RBP13.78□□□□□ -0.2
VPS4B-207ENST00000591519 PSEN1P49768 467 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 GOLGA2Q08379 1002 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 TPTE2Q6XPS3 522 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 C7orf43Q8WVR3 580 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 SPOCK2Q92563 424 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 MIS18AQ9NYP9 233 aa13.78□□□□□ -0.2
VPS4B-207ENST00000591519 TNRC6CQ9HCJ0 1690 aaKnown RBP13.78□□□□□ -0.2
VPS4B-207ENST00000591519 NFE2L2Q16236 605 aa13.77□□□□□ -0.21
VPS4B-207ENST00000591519 FER1L6Q2WGJ9 1857 aa13.77□□□□□ -0.21
VPS4B-207ENST00000591519 SOGA3Q5TF21 947 aa13.77□□□□□ -0.21
VPS4B-207ENST00000591519 DPY19L2Q6NUT2 758 aa13.77□□□□□ -0.21
VPS4B-207ENST00000591519 NBPF5PQ86XG9 351 aaPredicted RBP13.77□□□□□ -0.21
VPS4B-207ENST00000591519 PDCD7Q8N8D1 485 aaKnown RBP13.77□□□□□ -0.21
VPS4B-207ENST00000591519 POTECB2RU33 542 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 ERVV-1B6SEH8 477 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 NPHP1O15259 732 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 ST18O60284 1047 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 ZEB1P37275 1124 aaPredicted RBP13.76□□□□□ -0.21
VPS4B-207ENST00000591519 EIF4A1P60842 406 aaKnown RBP13.76□□□□□ -0.21
VPS4B-207ENST00000591519 MKRN3Q13064 507 aaKnown RBP13.76□□□□□ -0.21
VPS4B-207ENST00000591519 IFFO2Q5TF58 517 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 PRPF40BQ6NWY9 871 aaKnown RBP13.76□□□□□ -0.21
VPS4B-207ENST00000591519 SMC1BQ8NDV3 1235 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 NIP7Q9Y221 180 aaKnown RBP eCLIP13.76□□□□□ -0.21
VPS4B-207ENST00000591519 DLG5Q8TDM6 1919 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 SLX4Q8IY92 1834 aa13.76□□□□□ -0.21
VPS4B-207ENST00000591519 COL11A2P13942 1736 aaPredicted RBP13.76□□□□□ -0.21
VPS4B-207ENST00000591519 DICER1Q9UPY3 1922 aaKnown RBP13.75□□□□□ -0.21
VPS4B-207ENST00000591519 NPR1P16066 1061 aa13.75□□□□□ -0.21
VPS4B-207ENST00000591519 HLFQ16534 295 aa13.75□□□□□ -0.21
VPS4B-207ENST00000591519 ERFEQ4G0M1 354 aa13.75□□□□□ -0.21
VPS4B-207ENST00000591519 TAOK3Q9H2K8 898 aa13.75□□□□□ -0.21
VPS4B-207ENST00000591519 RALBP1Q15311 655 aa13.74□□□□□ -0.21
VPS4B-207ENST00000591519 JMYQ8N9B5 988 aa13.73□□□□□ -0.21
VPS4B-207ENST00000591519 BABAM1Q9NWV8 329 aa13.73□□□□□ -0.21
VPS4B-207ENST00000591519 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.73□□□□□ -0.21
VPS4B-207ENST00000591519 KDM3BQ7LBC6 1761 aa13.73□□□□□ -0.21
VPS4B-207ENST00000591519 ARFGEF2Q9Y6D5 1785 aa13.73□□□□□ -0.21
VPS4B-207ENST00000591519 WDR90Q96KV7 1748 aa13.73□□□□□ -0.21
VPS4B-207ENST00000591519 MAP3K15Q6ZN16 1313 aa13.72□□□□□ -0.21
VPS4B-207ENST00000591519 ALDH1B1P30837 517 aa13.72□□□□□ -0.21
VPS4B-207ENST00000591519 KLRG1Q96E93 195 aa13.72□□□□□ -0.21
VPS4B-207ENST00000591519 THUMPD2Q9BTF0 503 aaKnown RBP13.72□□□□□ -0.21
VPS4B-207ENST00000591519 TIAM2Q8IVF5 1701 aa13.72□□□□□ -0.21
VPS4B-207ENST00000591519 ERBB4Q15303 1308 aa13.71□□□□□ -0.21
VPS4B-207ENST00000591519 MAPK8IP3Q9UPT6 1336 aa13.71□□□□□ -0.21
VPS4B-207ENST00000591519 CRY2Q49AN0 593 aa13.71□□□□□ -0.21
VPS4B-207ENST00000591519 CCDC93Q567U6 631 aa13.71□□□□□ -0.21
VPS4B-207ENST00000591519 RTKN2Q8IZC4 609 aa13.71□□□□□ -0.21
VPS4B-207ENST00000591519 NYXQ9GZU5 481 aa13.71□□□□□ -0.21
VPS4B-207ENST00000591519 RRP7AQ9Y3A4 280 aaKnown RBP13.71□□□□□ -0.21
VPS4B-207ENST00000591519 LAMB4A4D0S4 1761 aa13.71□□□□□ -0.22
VPS4B-207ENST00000591519 RIPK4P57078 832 aa13.7□□□□□ -0.22
VPS4B-207ENST00000591519 HTRA3P83110 453 aa13.7□□□□□ -0.22
VPS4B-207ENST00000591519 NGEFQ8N5V2 710 aa13.7□□□□□ -0.22
VPS4B-207ENST00000591519 NUP98P52948 1817 aa13.69□□□□□ -0.22
VPS4B-207ENST00000591519 FAM177BA6PVY3 158 aa13.69□□□□□ -0.22
VPS4B-207ENST00000591519 DDNO94850 711 aaPredicted RBP13.69□□□□□ -0.22
VPS4B-207ENST00000591519 GTF2E1P29083 439 aaPredicted RBP13.69□□□□□ -0.22
VPS4B-207ENST00000591519 HOXA10P31260 410 aaPredicted RBP13.69□□□□□ -0.22
VPS4B-207ENST00000591519 FKBP4Q02790 459 aaKnown RBP eCLIP13.69□□□□□ -0.22
VPS4B-207ENST00000591519 PDAP1Q13442 181 aaKnown RBP13.69□□□□□ -0.22
VPS4B-207ENST00000591519 TTLL7Q6ZT98 887 aa13.69□□□□□ -0.22
VPS4B-207ENST00000591519 LRP10Q7Z4F1 713 aa13.69□□□□□ -0.22
VPS4B-207ENST00000591519 ZNF34Q8IZ26 560 aa13.69□□□□□ -0.22
VPS4B-207ENST00000591519 MYL6BP14649 208 aa13.68□□□□□ -0.22
VPS4B-207ENST00000591519 TMPOP42166 694 aaKnown RBP13.68□□□□□ -0.22
VPS4B-207ENST00000591519 PDIA6Q15084 440 aa13.68□□□□□ -0.22
VPS4B-207ENST00000591519 GIGYF2Q6Y7W6 1299 aaKnown RBP13.68□□□□□ -0.22
VPS4B-207ENST00000591519 KIF6Q6ZMV9 814 aa13.68□□□□□ -0.22
VPS4B-207ENST00000591519 CDAN1Q8IWY9 1227 aa13.68□□□□□ -0.22
VPS4B-207ENST00000591519 L3MBTL3Q96JM7 780 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-207ENST00000591519 TSPYL4Q9UJ04 414 aa13.68□□□□□ -0.22
VPS4B-207ENST00000591519 IBTKQ9P2D0 1353 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-207ENST00000591519 CACNA1SQ13698 1873 aa13.67□□□□□ -0.22
VPS4B-207ENST00000591519 SUSD4Q5VX71 490 aa13.67□□□□□ -0.22
VPS4B-207ENST00000591519 CC2D2BQ6DHV5 1058 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms