RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 GPRC5DQ9NZD1 345 aa14.87□□□□□ -0.03
ZNF540-209ENST00000590588 USP16Q9Y5T5 823 aa14.87□□□□□ -0.03
ZNF540-209ENST00000590588 SNED1Q8TER0 1413 aa14.86□□□□□ -0.03
ZNF540-209ENST00000590588 NIM1KQ8IY84 436 aa14.86□□□□□ -0.03
ZNF540-209ENST00000590588 PCGF6Q9BYE7 350 aa14.86□□□□□ -0.03
ZNF540-209ENST00000590588 PGAP2Q9UHJ9 254 aa14.86□□□□□ -0.03
ZNF540-209ENST00000590588 PIP4K2AP48426 406 aaPredicted RBP14.85□□□□□ -0.03
ZNF540-209ENST00000590588 ZC3H15Q8WU90 426 aaKnown RBP14.85□□□□□ -0.03
ZNF540-209ENST00000590588 GLIS2Q9BZE0 524 aaPredicted RBP14.85□□□□□ -0.03
ZNF540-209ENST00000590588 ZNF408Q9H9D4 720 aa14.85□□□□□ -0.03
ZNF540-209ENST00000590588 KNSTRNQ9Y448 316 aa14.85□□□□□ -0.03
ZNF540-209ENST00000590588 BTBD11A6QL63 1104 aa14.84□□□□□ -0.03
ZNF540-209ENST00000590588 DIAPH1O60610 1272 aaKnown RBP14.84□□□□□ -0.03
ZNF540-209ENST00000590588 CRY2Q49AN0 593 aa14.84□□□□□ -0.03
ZNF540-209ENST00000590588 CDC37L1Q7L3B6 337 aa14.84□□□□□ -0.03
ZNF540-209ENST00000590588 GAS2L2Q8NHY3 880 aa14.84□□□□□ -0.03
ZNF540-209ENST00000590588 VPS33BQ9H267 617 aa14.84□□□□□ -0.03
ZNF540-209ENST00000590588 SAGE1Q9NXZ1 904 aa14.84□□□□□ -0.03
ZNF540-209ENST00000590588 ZIC5Q96T25 663 aa14.83□□□□□ -0.04
ZNF540-209ENST00000590588 NYXQ9GZU5 481 aa14.83□□□□□ -0.04
ZNF540-209ENST00000590588 COL4A5P29400 1685 aa14.83□□□□□ -0.04
ZNF540-209ENST00000590588 BCORQ6W2J9 1755 aa14.83□□□□□ -0.04
ZNF540-209ENST00000590588 PPIP5K2O43314 1243 aa14.82□□□□□ -0.04
ZNF540-209ENST00000590588 KCNQ3O43525 872 aa14.82□□□□□ -0.04
ZNF540-209ENST00000590588 HUNKP57058 714 aa14.82□□□□□ -0.04
ZNF540-209ENST00000590588 RPGRQ92834 1020 aaKnown RBP14.82□□□□□ -0.04
ZNF540-209ENST00000590588 TMX4Q9H1E5 349 aaPredicted RBP14.82□□□□□ -0.04
ZNF540-209ENST00000590588 SNRPA1P09661 255 aaKnown RBP14.81□□□□□ -0.04
ZNF540-209ENST00000590588 HOXA10P31260 410 aaPredicted RBP14.81□□□□□ -0.04
ZNF540-209ENST00000590588 CXCL9Q07325 125 aa14.81□□□□□ -0.04
ZNF540-209ENST00000590588 GCC1Q96CN9 775 aa14.81□□□□□ -0.04
ZNF540-209ENST00000590588 RBM17Q96I25 401 aaKnown RBP14.81□□□□□ -0.04
ZNF540-209ENST00000590588 ZNRF3Q9ULT6 936 aa14.81□□□□□ -0.04
ZNF540-209ENST00000590588 HLFQ16534 295 aa14.8□□□□□ -0.04
ZNF540-209ENST00000590588 CCDC102AQ96A19 550 aa14.8□□□□□ -0.04
ZNF540-209ENST00000590588 CRAMP1Q96RY5 1269 aa14.8□□□□□ -0.04
ZNF540-209ENST00000590588 NPC1L1Q9UHC9 1359 aa14.8□□□□□ -0.04
ZNF540-209ENST00000590588 PRAMEF22A3QJZ6 481 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 PPEF1O14829 653 aaPredicted RBP14.79□□□□□ -0.04
ZNF540-209ENST00000590588 TRPA1O75762 1119 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 GMPSP49915 693 aaPredicted RBP14.79□□□□□ -0.04
ZNF540-209ENST00000590588 HIRAP54198 1017 aaPredicted RBP14.79□□□□□ -0.04
ZNF540-209ENST00000590588 AOC3Q16853 763 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 KIF7Q2M1P5 1343 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 RGMBQ6NW40 437 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 CTU1Q7Z7A3 348 aaKnown RBP14.79□□□□□ -0.04
ZNF540-209ENST00000590588 NUTM1Q86Y26 1132 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 NBPF15Q8N660 670 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 BCL2L13Q9BXK5 485 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 RNF186Q9NXI6 227 aa14.79□□□□□ -0.04
ZNF540-209ENST00000590588 CEMIPQ8WUJ3 1361 aa14.78□□□□□ -0.04
ZNF540-209ENST00000590588 CDHR2Q9BYE9 1310 aa14.78□□□□□ -0.04
ZNF540-209ENST00000590588 FAM155AB1AL88 458 aaPredicted RBP14.78□□□□□ -0.04
ZNF540-209ENST00000590588 NBPF26B4DH59 902 aa14.78□□□□□ -0.04
ZNF540-209ENST00000590588 TCERG1O14776 1098 aaKnown RBP14.78□□□□□ -0.04
ZNF540-209ENST00000590588 KIF23Q02241 960 aaPredicted RBP14.78□□□□□ -0.04
ZNF540-209ENST00000590588 NBPF10Q6P3W6 841 aaKnown RBP14.78□□□□□ -0.04
ZNF540-209ENST00000590588 USP48Q86UV5 1035 aa14.78□□□□□ -0.04
ZNF540-209ENST00000590588 SUPT20HQ8NEM7 779 aa14.78□□□□□ -0.04
ZNF540-209ENST00000590588 TNIP1Q15025 636 aa14.77□□□□□ -0.05
ZNF540-209ENST00000590588 C2orf69Q8N8R5 385 aa14.77□□□□□ -0.05
ZNF540-209ENST00000590588 CNOT7Q9UIV1 285 aaKnown RBP14.77□□□□□ -0.05
ZNF540-209ENST00000590588 H7C1D1 291 aa14.76□□□□□ -0.05
ZNF540-209ENST00000590588 ZNF157P51786 506 aaPredicted RBP14.76□□□□□ -0.05
ZNF540-209ENST00000590588 PKN2Q16513 984 aaKnown RBP14.76□□□□□ -0.05
ZNF540-209ENST00000590588 AMER1Q5JTC6 1135 aaPredicted RBP14.76□□□□□ -0.05
ZNF540-209ENST00000590588 TIMELESSQ9UNS1 1208 aa14.76□□□□□ -0.05
ZNF540-209ENST00000590588 ABCC12Q96J65 1359 aa14.75□□□□□ -0.05
ZNF540-209ENST00000590588 ERVV-1B6SEH8 477 aa14.75□□□□□ -0.05
ZNF540-209ENST00000590588 U2SURPO15042 1029 aaKnown RBP14.75□□□□□ -0.05
ZNF540-209ENST00000590588 ZEB1P37275 1124 aaPredicted RBP14.75□□□□□ -0.05
ZNF540-209ENST00000590588 EIF4G2P78344 907 aaKnown RBP eCLIP14.75□□□□□ -0.05
ZNF540-209ENST00000590588 TRPM4Q8TD43 1214 aa14.75□□□□□ -0.05
ZNF540-209ENST00000590588 RTFDC1Q9BY42 306 aaPredicted RBP14.75□□□□□ -0.05
ZNF540-209ENST00000590588 GBA2Q9HCG7 927 aaPredicted RBP14.75□□□□□ -0.05
ZNF540-209ENST00000590588 HPS5Q9UPZ3 1129 aa14.75□□□□□ -0.05
ZNF540-209ENST00000590588 ATP6V0A2Q9Y487 856 aa14.75□□□□□ -0.05
ZNF540-209ENST00000590588 SIPA1L3O60292 1781 aaPredicted RBP14.75□□□□□ -0.05
ZNF540-209ENST00000590588 REM2Q8IYK8 340 aaPredicted RBP14.74□□□□□ -0.05
ZNF540-209ENST00000590588 CSRNP1Q96S65 589 aa14.74□□□□□ -0.05
ZNF540-209ENST00000590588 RAD17O75943 681 aa14.73□□□□□ -0.05
ZNF540-209ENST00000590588 RIC1Q4ADV7 1423 aa14.73□□□□□ -0.05
ZNF540-209ENST00000590588 KIAA2012Q0VF49 1180 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 SUSD4Q5VX71 490 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 DLK2Q6UY11 383 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 KRT26Q7Z3Y9 468 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 SLC51AQ86UW1 340 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 NGEFQ8N5V2 710 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 NLRP3Q96P20 1036 aa14.72□□□□□ -0.05
ZNF540-209ENST00000590588 HSPA5P11021 654 aaKnown RBP14.71□□□□□ -0.05
ZNF540-209ENST00000590588 HABP4Q5JVS0 413 aaKnown RBP14.71□□□□□ -0.05
ZNF540-209ENST00000590588 DPP8Q6V1X1 898 aaPredicted RBP14.71□□□□□ -0.05
ZNF540-209ENST00000590588 MICALL2Q8IY33 904 aa14.71□□□□□ -0.05
ZNF540-209ENST00000590588 MPNDQ8N594 471 aa14.71□□□□□ -0.05
ZNF540-209ENST00000590588 RTF1Q92541 710 aaKnown RBP14.71□□□□□ -0.05
ZNF540-209ENST00000590588 DPF2Q92785 391 aa14.71□□□□□ -0.05
ZNF540-209ENST00000590588 HDAC9Q9UKV0 1011 aa14.71□□□□□ -0.05
ZNF540-209ENST00000590588 IBTKQ9P2D0 1353 aaPredicted RBP14.71□□□□□ -0.06
ZNF540-209ENST00000590588 MAP3K15Q6ZN16 1313 aa14.7□□□□□ -0.06
ZNF540-209ENST00000590588 BBOX1O75936 387 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms