RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	IL6ST	P40189	918 aa	Predicted RBP	18.94	■□□□□ 0.62
DDX39A-209	ENST00000589318	RHPN1	Q8TCX5	695 aa		18.94	■□□□□ 0.62
DDX39A-209	ENST00000589318	RRP9	O43818	475 aa	Known RBP	18.94	■□□□□ 0.62
DDX39A-209	ENST00000589318	PDE1A	P54750	535 aa		18.94	■□□□□ 0.62
DDX39A-209	ENST00000589318	KIF6	Q6ZMV9	814 aa		18.94	■□□□□ 0.62
DDX39A-209	ENST00000589318	PA2G4	Q9UQ80	394 aa	Known RBP	18.94	■□□□□ 0.62
DDX39A-209	ENST00000589318	TRIM28	Q13263	835 aa	Known RBP	18.93	■□□□□ 0.62
DDX39A-209	ENST00000589318	GIGYF2	Q6Y7W6	1299 aa	Known RBP	18.93	■□□□□ 0.62
DDX39A-209	ENST00000589318	CRKL	P46109	303 aa	Known RBP	18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	HLF	Q16534	295 aa		18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	FAM182B	Q5T319	152 aa		18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	KIF1BP	Q96EK5	621 aa		18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	IL1RAPL2	Q9NP60	686 aa		18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	CCDC87	Q9NVE4	849 aa		18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	EIF5	P55010	431 aa	Known RBP	18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	HSP90AB4P	Q58FF6	505 aa		18.92	■□□□□ 0.62
DDX39A-209	ENST00000589318	FOXO4	P98177	505 aa		18.91	■□□□□ 0.62
DDX39A-209	ENST00000589318	RFX5	P48382	616 aa	Predicted RBP	18.9	■□□□□ 0.62
DDX39A-209	ENST00000589318	STAP2	Q9UGK3	403 aa		18.9	■□□□□ 0.62
DDX39A-209	ENST00000589318	FRAT2	O75474	233 aa	Predicted RBP	18.9	■□□□□ 0.62
DDX39A-209	ENST00000589318	MX1	P20591	662 aa		18.9	■□□□□ 0.62
DDX39A-209	ENST00000589318	SEPT12	Q8IYM1	358 aa		18.9	■□□□□ 0.62
DDX39A-209	ENST00000589318	QTRT2	Q9H974	415 aa	Known RBP	18.9	■□□□□ 0.62
DDX39A-209	ENST00000589318	TSHZ3	Q63HK5	1081 aa		18.89	■□□□□ 0.61
DDX39A-209	ENST00000589318	BRWD3	Q6RI45	1802 aa		18.89	■□□□□ 0.61
DDX39A-209	ENST00000589318	LY75	O60449	1722 aa		18.89	■□□□□ 0.61
DDX39A-209	ENST00000589318	ERVV-1	B6SEH8	477 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	SDS	P20132	328 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	TBC1D9	Q6ZT07	1266 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	DZIP3	Q86Y13	1208 aa	Known RBP	18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	KLHDC4	Q8TBB5	520 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	SASH1	O94885	1247 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	COPRS	Q9NQ92	184 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	TBC1D2B	Q9UPU7	963 aa		18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	18.88	■□□□□ 0.61
DDX39A-209	ENST00000589318	PTPN12	Q05209	780 aa	Known RBP	18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	LMBR1L	Q6UX01	489 aa		18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	ERC1	Q8IUD2	1116 aa		18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	LINC00116	Q8NCU8	138 aa		18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	TBC1D32	Q96NH3	1257 aa		18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	ARX	Q96QS3	562 aa		18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	AOX1	Q06278	1338 aa		18.87	■□□□□ 0.61
DDX39A-209	ENST00000589318	BCOR	Q6W2J9	1755 aa		18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	NUTM1	Q86Y26	1132 aa		18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	CDC45	O75419	566 aa		18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	PCCA	P05165	728 aa	Predicted RBP	18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	OS9	Q13438	667 aa	Predicted RBP	18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	HSP90AB3P	Q58FF7	597 aa		18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	NLRP10	Q86W26	655 aa		18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	TAF1L	Q8IZX4	1826 aa		18.86	■□□□□ 0.61
DDX39A-209	ENST00000589318	USP42	Q9H9J4	1324 aa	Known RBP	18.85	■□□□□ 0.61
DDX39A-209	ENST00000589318	EP400	Q96L91	3159 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	GPT	P24298	496 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	MFAP1	P55081	439 aa	Known RBP	18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	KCNQ4	P56696	695 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	SIL1	Q9H173	461 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	UBN2	Q6ZU65	1347 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	MYH3	P11055	1940 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	CAMTA2	O94983	1202 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	G3BP1	Q13283	466 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	ZNF34	Q8IZ26	560 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	PI4K2B	Q8TCG2	481 aa		18.84	■□□□□ 0.61
DDX39A-209	ENST00000589318	CLCN1	P35523	988 aa		18.83	■□□□□ 0.6
DDX39A-209	ENST00000589318	FAM89A	Q96GI7	184 aa		18.83	■□□□□ 0.6
DDX39A-209	ENST00000589318	PLA2G12B	Q9BX93	195 aa		18.83	■□□□□ 0.6
DDX39A-209	ENST00000589318	UPF2	Q9HAU5	1272 aa	Known RBP	18.83	■□□□□ 0.6
DDX39A-209	ENST00000589318	CNTNAP4	Q9C0A0	1308 aa		18.83	■□□□□ 0.6
DDX39A-209	ENST00000589318	HSP90AA1	P07900	732 aa	Known RBP	18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	BECN1	Q14457	450 aa		18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	HSP90AA2P	Q14568	343 aa	Predicted RBP	18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	CLASRP	Q8N2M8	674 aa	Known RBP	18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	CDHR2	Q9BYE9	1310 aa		18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	AK9	Q5TCS8	1911 aa		18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	SYNE4	Q8N205	404 aa		18.82	■□□□□ 0.6
DDX39A-209	ENST00000589318	ZMYND15	Q9H091	742 aa		18.81	■□□□□ 0.6
DDX39A-209	ENST00000589318	EAF2	Q96CJ1	260 aa	Predicted RBP	18.8	■□□□□ 0.6
DDX39A-209	ENST00000589318	RRAGD	Q9NQL2	400 aa	Predicted RBP	18.8	■□□□□ 0.6
DDX39A-209	ENST00000589318	SLC4A3	P48751	1232 aa		18.8	■□□□□ 0.6
DDX39A-209	ENST00000589318	SCN7A	Q01118	1682 aa		18.8	■□□□□ 0.6
DDX39A-209	ENST00000589318	CSF1R	P07333	972 aa		18.79	■□□□□ 0.6
DDX39A-209	ENST00000589318	C22orf23	Q9BZE7	217 aa		18.79	■□□□□ 0.6
DDX39A-209	ENST00000589318	TTC41P	Q6P2S7	1318 aa		18.79	■□□□□ 0.6
DDX39A-209	ENST00000589318	RC3H1	Q5TC82	1133 aa	Known RBP	18.78	■□□□□ 0.6
DDX39A-209	ENST00000589318	ATG9A	Q7Z3C6	839 aa		18.78	■□□□□ 0.6
DDX39A-209	ENST00000589318	AACS	Q86V21	672 aa		18.78	■□□□□ 0.6
DDX39A-209	ENST00000589318	CHMP3	Q9Y3E7	222 aa		18.78	■□□□□ 0.6
DDX39A-209	ENST00000589318	BCL11B	Q9C0K0	894 aa	Predicted RBP	18.78	■□□□□ 0.6
DDX39A-209	ENST00000589318	CCNL1	Q9UK58	526 aa	Predicted RBP	18.78	■□□□□ 0.6
DDX39A-209	ENST00000589318	IFIT2	P09913	472 aa	Known RBP	18.77	■□□□□ 0.6
DDX39A-209	ENST00000589318	TLR7	Q9NYK1	1049 aa	Known RBP	18.77	■□□□□ 0.6
DDX39A-209	ENST00000589318	TRMT112	Q9UI30	125 aa	Known RBP	18.77	■□□□□ 0.6
DDX39A-209	ENST00000589318	DDX60	Q8IY21	1712 aa	Known RBP	18.77	■□□□□ 0.6
DDX39A-209	ENST00000589318	C4B	P0C0L5	1744 aa		18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	RBM25	P49756	843 aa	Known RBP	18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	TFCP2	Q12800	502 aa		18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	ECHDC1	Q9NTX5	307 aa		18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	LAMB2	P55268	1798 aa		18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	SUSD4	Q5VX71	490 aa		18.76	■□□□□ 0.59
DDX39A-209	ENST00000589318	KRT27	Q7Z3Y8	459 aa		18.76	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms