RNA–Protein interactions for RNA: ENST00000587429.1

PKN1-210, Transcript of protein kinase N1, human

TSL 4

Gene PKN1, Length 562 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKN1-210	ENST00000587429	CCDC93	Q567U6	631 aa		28.11	■■■□□ 2.09
PKN1-210	ENST00000587429	ANKRD36C	Q5JPF3	1778 aa		28.1	■■■□□ 2.09
PKN1-210	ENST00000587429	ELL2	O00472	640 aa	Predicted RBP	28.1	■■■□□ 2.09
PKN1-210	ENST00000587429	GNAI1	P63096	354 aa		28.1	■■■□□ 2.09
PKN1-210	ENST00000587429	UTP14A	Q9BVJ6	771 aa	Known RBP	28.1	■■■□□ 2.09
PKN1-210	ENST00000587429	ANP32C	O43423	234 aa		28.09	■■■□□ 2.09
PKN1-210	ENST00000587429	TCIRG1	Q13488	830 aa		28.09	■■■□□ 2.09
PKN1-210	ENST00000587429	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.09	■■■□□ 2.09
PKN1-210	ENST00000587429	ZNF428	Q96B54	188 aa		28.09	■■■□□ 2.09
PKN1-210	ENST00000587429	DBF4	Q9UBU7	674 aa	Predicted RBP	28.09	■■■□□ 2.09
PKN1-210	ENST00000587429	RIC1	Q4ADV7	1423 aa		28.09	■■■□□ 2.09
PKN1-210	ENST00000587429	HOXA10	P31260	410 aa	Predicted RBP	28.08	■■■□□ 2.09
PKN1-210	ENST00000587429	CALD1	Q05682	793 aa	Known RBP	28.08	■■■□□ 2.09
PKN1-210	ENST00000587429	NLRP10	Q86W26	655 aa		28.08	■■■□□ 2.09
PKN1-210	ENST00000587429	SYNE4	Q8N205	404 aa		28.08	■■■□□ 2.09
PKN1-210	ENST00000587429	RPGR	Q92834	1020 aa	Known RBP	28.08	■■■□□ 2.09
PKN1-210	ENST00000587429	MRS2	Q9HD23	443 aa		28.08	■■■□□ 2.09
PKN1-210	ENST00000587429	HSP90AB3P	Q58FF7	597 aa		28.07	■■■□□ 2.08
PKN1-210	ENST00000587429	RBM46	Q8TBY0	533 aa	Known RBP	28.07	■■■□□ 2.08
PKN1-210	ENST00000587429	FKBP4	Q02790	459 aa	Known RBP eCLIP	28.06	■■■□□ 2.08
PKN1-210	ENST00000587429	SLC10A5	Q5PT55	438 aa		28.06	■■■□□ 2.08
PKN1-210	ENST00000587429	SLC51A	Q86UW1	340 aa		28.06	■■■□□ 2.08
PKN1-210	ENST00000587429	C8orf58	Q8NAV2	365 aa		28.06	■■■□□ 2.08
PKN1-210	ENST00000587429	ZNF277	Q9NRM2	450 aa	Predicted RBP	28.06	■■■□□ 2.08
PKN1-210	ENST00000587429	ANKRD13D	Q6ZTN6	518 aa		28.05	■■■□□ 2.08
PKN1-210	ENST00000587429	POTEC	B2RU33	542 aa		28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	HCLS1	P14317	486 aa	Predicted RBP	28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	DPY19L2	Q6NUT2	758 aa		28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	RTKN2	Q8IZC4	609 aa		28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	PLBD2	Q8NHP8	589 aa		28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	RBM17	Q96I25	401 aa	Known RBP	28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	NLRP3	Q96P20	1036 aa		28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	HYPK	Q9NX55	129 aa		28.04	■■■□□ 2.08
PKN1-210	ENST00000587429	TCERG1	O14776	1098 aa	Known RBP	28.03	■■■□□ 2.08
PKN1-210	ENST00000587429	VEGFA	P15692	232 aa	Predicted RBP	28.03	■■■□□ 2.08
PKN1-210	ENST00000587429	CRAMP1	Q96RY5	1269 aa		28.03	■■■□□ 2.08
PKN1-210	ENST00000587429	TRMT112	Q9UI30	125 aa	Known RBP	28.03	■■■□□ 2.08
PKN1-210	ENST00000587429	LAMB2	P55268	1798 aa		28.01	■■■□□ 2.08
PKN1-210	ENST00000587429	DDN	O94850	711 aa	Predicted RBP	28.01	■■■□□ 2.07
PKN1-210	ENST00000587429	TSR2	Q969E8	191 aa	Known RBP	28.01	■■■□□ 2.07
PKN1-210	ENST00000587429	PHAX	Q9H814	394 aa	Known RBP	28.01	■■■□□ 2.07
PKN1-210	ENST00000587429	SNED1	Q8TER0	1413 aa		28.01	■■■□□ 2.07
PKN1-210	ENST00000587429	ATP5J2-PTCD1	G3V325	749 aa		28	■■■□□ 2.07
PKN1-210	ENST00000587429	WWC1	Q8IX03	1113 aa		28	■■■□□ 2.07
PKN1-210	ENST00000587429	TSPYL6	Q8N831	410 aa		28	■■■□□ 2.07
PKN1-210	ENST00000587429	WDR90	Q96KV7	1748 aa		28	■■■□□ 2.07
PKN1-210	ENST00000587429	CCDC27	Q2M243	656 aa		27.99	■■■□□ 2.07
PKN1-210	ENST00000587429	ISCA1	Q9BUE6	129 aa		27.99	■■■□□ 2.07
PKN1-210	ENST00000587429	RNF123	Q5XPI4	1314 aa		27.98	■■■□□ 2.07
PKN1-210	ENST00000587429	SH3TC1	Q8TE82	1336 aa		27.97	■■■□□ 2.07
PKN1-210	ENST00000587429	PPEF1	O14829	653 aa	Predicted RBP	27.97	■■■□□ 2.07
PKN1-210	ENST00000587429	IARS	P41252	1262 aa	Known RBP	27.97	■■■□□ 2.07
PKN1-210	ENST00000587429	FSTL1	Q12841	308 aa		27.97	■■■□□ 2.07
PKN1-210	ENST00000587429	TAF1	P21675	1872 aa		27.97	■■■□□ 2.07
PKN1-210	ENST00000587429	ABCC4	O15439	1325 aa		27.96	■■■□□ 2.07
PKN1-210	ENST00000587429	APLP1	P51693	650 aa		27.96	■■■□□ 2.07
PKN1-210	ENST00000587429	CC2D2B	Q6DHV5	1058 aa		27.96	■■■□□ 2.07
PKN1-210	ENST00000587429	PSMD1	Q99460	953 aa		27.96	■■■□□ 2.07
PKN1-210	ENST00000587429	RIC3	Q7Z5B4	369 aa		27.95	■■■□□ 2.06
PKN1-210	ENST00000587429	FAM89A	Q96GI7	184 aa		27.95	■■■□□ 2.06
PKN1-210	ENST00000587429	SALL2	Q9Y467	1007 aa	Predicted RBP	27.95	■■■□□ 2.06
PKN1-210	ENST00000587429	ZNF541	Q9H0D2	1346 aa		27.94	■■■□□ 2.06
PKN1-210	ENST00000587429	RTL5	Q5HYW3	569 aa	Predicted RBP	27.93	■■■□□ 2.06
PKN1-210	ENST00000587429	SMC1B	Q8NDV3	1235 aa		27.93	■■■□□ 2.06
PKN1-210	ENST00000587429	DDX60	Q8IY21	1712 aa	Known RBP	27.92	■■■□□ 2.06
PKN1-210	ENST00000587429	HTRA3	P83110	453 aa		27.92	■■■□□ 2.06
PKN1-210	ENST00000587429	GOLGA2	Q08379	1002 aa		27.92	■■■□□ 2.06
PKN1-210	ENST00000587429	CCDC30	Q5VVM6	783 aa		27.92	■■■□□ 2.06
PKN1-210	ENST00000587429	TRIM28	Q13263	835 aa	Known RBP	27.91	■■■□□ 2.06
PKN1-210	ENST00000587429	ATP6V0A2	Q9Y487	856 aa		27.91	■■■□□ 2.06
PKN1-210	ENST00000587429	COL4A5	P29400	1685 aa		27.91	■■■□□ 2.06
PKN1-210	ENST00000587429	FZD9	O00144	591 aa		27.9	■■■□□ 2.06
PKN1-210	ENST00000587429	NCBP3	Q53F19	620 aa	Known RBP	27.89	■■■□□ 2.06
PKN1-210	ENST00000587429	DDX46	Q7L014	1031 aa	Known RBP	27.89	■■■□□ 2.06
PKN1-210	ENST00000587429	MYD88	Q99836	296 aa		27.89	■■■□□ 2.06
PKN1-210	ENST00000587429	IL16	Q14005	1332 aa		27.89	■■■□□ 2.05
PKN1-210	ENST00000587429	BBOX1	O75936	387 aa		27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	POTEI	P0CG38	1075 aa		27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	POTEJ	P0CG39	1038 aa		27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	GRIPAP1	Q4V328	841 aa		27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	FAM9B	Q8IZU0	186 aa		27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	DNAJC5G	Q8N7S2	189 aa		27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	L3MBTL3	Q96JM7	780 aa	Predicted RBP	27.88	■■■□□ 2.05
PKN1-210	ENST00000587429	JDP2	Q8WYK2	163 aa		27.87	■■■□□ 2.05
PKN1-210	ENST00000587429	GRAP	Q13588	217 aa		27.86	■■■□□ 2.05
PKN1-210	ENST00000587429	TWISTNB	Q3B726	338 aa	Predicted RBP	27.86	■■■□□ 2.05
PKN1-210	ENST00000587429	SP8	Q8IXZ3	490 aa		27.86	■■■□□ 2.05
PKN1-210	ENST00000587429	LARGE2	Q8N3Y3	721 aa		27.86	■■■□□ 2.05
PKN1-210	ENST00000587429	GRAPL	Q8TC17	118 aa	Predicted RBP	27.86	■■■□□ 2.05
PKN1-210	ENST00000587429	SCN4A	P35499	1836 aa		27.85	■■■□□ 2.05
PKN1-210	ENST00000587429	IRS4	O14654	1257 aa	Predicted RBP	27.85	■■■□□ 2.05
PKN1-210	ENST00000587429	JARID2	Q92833	1246 aa	Predicted RBP	27.85	■■■□□ 2.05
PKN1-210	ENST00000587429	CHMP4A	Q9BY43	222 aa		27.85	■■■□□ 2.05
PKN1-210	ENST00000587429	TMX4	Q9H1E5	349 aa	Predicted RBP	27.85	■■■□□ 2.05
PKN1-210	ENST00000587429	SF3B3	Q15393	1217 aa	Known RBP	27.84	■■■□□ 2.05
PKN1-210	ENST00000587429	G2E3	Q7L622	706 aa		27.84	■■■□□ 2.05
PKN1-210	ENST00000587429	METTL22	Q9BUU2	404 aa	Predicted RBP	27.84	■■■□□ 2.05
PKN1-210	ENST00000587429	WDR63	Q8IWG1	891 aa		27.83	■■■□□ 2.05
PKN1-210	ENST00000587429	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	27.83	■■■□□ 2.05
PKN1-210	ENST00000587429	TAF1D	Q9H5J8	278 aa	Predicted RBP	27.83	■■■□□ 2.05

Retrieved 100 of 20,778 RNA–protein pairs in 50 ms