RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 NEXNQ0ZGT2 675 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 NLRP10Q86W26 655 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 TSPYL6Q8N831 410 aa13.95□□□□□ -0.18
CLIP3-203ENST00000586457 PHAXQ9H814 394 aaKnown RBP13.95□□□□□ -0.18
CLIP3-203ENST00000586457 GOLGB1Q14789 3259 aaKnown RBP13.95□□□□□ -0.18
CLIP3-203ENST00000586457 SH3TC1Q8TE82 1336 aa13.94□□□□□ -0.18
CLIP3-203ENST00000586457 FANCIQ9NVI1 1328 aa13.94□□□□□ -0.18
CLIP3-203ENST00000586457 NTSR2O95665 410 aa13.94□□□□□ -0.18
CLIP3-203ENST00000586457 EXOSC9Q06265 439 aaKnown RBP13.94□□□□□ -0.18
CLIP3-203ENST00000586457 KIAA1551Q9HCM1 1747 aa13.94□□□□□ -0.18
CLIP3-203ENST00000586457 IBTKQ9P2D0 1353 aaPredicted RBP13.94□□□□□ -0.18
CLIP3-203ENST00000586457 KLRG2A4D1S0 409 aaPredicted RBP13.93□□□□□ -0.18
CLIP3-203ENST00000586457 CCDC93Q567U6 631 aa13.93□□□□□ -0.18
CLIP3-203ENST00000586457 RTKN2Q8IZC4 609 aa13.93□□□□□ -0.18
CLIP3-203ENST00000586457 ZNF428Q96B54 188 aa13.93□□□□□ -0.18
CLIP3-203ENST00000586457 MYD88Q99836 296 aa13.93□□□□□ -0.18
CLIP3-203ENST00000586457 TAOK3Q9H2K8 898 aa13.93□□□□□ -0.18
CLIP3-203ENST00000586457 KDM2BQ8NHM5 1336 aa13.92□□□□□ -0.18
CLIP3-203ENST00000586457 HCLS1P14317 486 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-203ENST00000586457 RASSF7Q02833 373 aa13.92□□□□□ -0.18
CLIP3-203ENST00000586457 RTL5Q5HYW3 569 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-203ENST00000586457 SLC10A5Q5PT55 438 aa13.92□□□□□ -0.18
CLIP3-203ENST00000586457 DDX46Q7L014 1031 aaKnown RBP13.92□□□□□ -0.18
CLIP3-203ENST00000586457 C16orf71Q8IYS4 520 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-203ENST00000586457 UTRNP46939 3433 aa13.92□□□□□ -0.18
CLIP3-203ENST00000586457 ARFGEF1Q9Y6D6 1849 aa13.92□□□□□ -0.18
CLIP3-203ENST00000586457 FKBP5Q13451 457 aaPredicted RBP13.91□□□□□ -0.18
CLIP3-203ENST00000586457 CC2D2BQ6DHV5 1058 aa13.91□□□□□ -0.18
CLIP3-203ENST00000586457 DPY19L2Q6NUT2 758 aa13.91□□□□□ -0.18
CLIP3-203ENST00000586457 KSR2Q6VAB6 950 aa13.91□□□□□ -0.18
CLIP3-203ENST00000586457 FAM89AQ96GI7 184 aa13.91□□□□□ -0.18
CLIP3-203ENST00000586457 MAP3K2Q9Y2U5 619 aa13.91□□□□□ -0.18
CLIP3-203ENST00000586457 BRCA1P38398 1863 aaKnown RBP13.91□□□□□ -0.18
CLIP3-203ENST00000586457 PI4KAP2A4QPH2 592 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 E9PSI1 815 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 VAMP4O75379 141 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 HOXA10P31260 410 aaPredicted RBP13.9□□□□□ -0.18
CLIP3-203ENST00000586457 TRIM28Q13263 835 aaKnown RBP13.9□□□□□ -0.18
CLIP3-203ENST00000586457 CRY2Q49AN0 593 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 GRIPAP1Q4V328 841 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 PI4KAP1Q8N8J0 262 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 CCDC191Q8NCU4 936 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 CRAMP1Q96RY5 1269 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 ISCA1Q9BUE6 129 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 METTL22Q9BUU2 404 aaPredicted RBP13.9□□□□□ -0.18
CLIP3-203ENST00000586457 CWC25Q9NXE8 425 aaPredicted RBP13.9□□□□□ -0.18
CLIP3-203ENST00000586457 ANKRD31Q8N7Z5 1873 aa13.9□□□□□ -0.18
CLIP3-203ENST00000586457 ABCC12Q96J65 1359 aa13.89□□□□□ -0.19
CLIP3-203ENST00000586457 PPEF1O14829 653 aaPredicted RBP13.89□□□□□ -0.19
CLIP3-203ENST00000586457 BBOX1O75936 387 aa13.89□□□□□ -0.19
CLIP3-203ENST00000586457 DLEC1Q9Y238 1755 aa13.88□□□□□ -0.19
CLIP3-203ENST00000586457 IRS4O14654 1257 aaPredicted RBP13.88□□□□□ -0.19
CLIP3-203ENST00000586457 FLIIQ13045 1269 aa13.88□□□□□ -0.19
CLIP3-203ENST00000586457 MIER1Q8N108 512 aa13.88□□□□□ -0.19
CLIP3-203ENST00000586457 ZBTB38Q8NAP3 1195 aaPredicted RBP13.88□□□□□ -0.19
CLIP3-203ENST00000586457 ZC3H4Q9UPT8 1303 aaKnown RBP13.88□□□□□ -0.19
CLIP3-203ENST00000586457 NFKBIEO00221 500 aa13.87□□□□□ -0.19
CLIP3-203ENST00000586457 FKBP4Q02790 459 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLIP3-203ENST00000586457 SYNE4Q8N205 404 aa13.87□□□□□ -0.19
CLIP3-203ENST00000586457 JDP2Q8WYK2 163 aa13.87□□□□□ -0.19
CLIP3-203ENST00000586457 SPINK5Q9NQ38 1064 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-203ENST00000586457 RIC1Q4ADV7 1423 aa13.87□□□□□ -0.19
CLIP3-203ENST00000586457 G2E3Q7L622 706 aa13.86□□□□□ -0.19
CLIP3-203ENST00000586457 LTBP3Q9NS15 1303 aa13.86□□□□□ -0.19
CLIP3-203ENST00000586457 ADCY9O60503 1353 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 COL11A2P13942 1736 aaPredicted RBP13.85□□□□□ -0.19
CLIP3-203ENST00000586457 PCCAP05165 728 aaPredicted RBP13.85□□□□□ -0.19
CLIP3-203ENST00000586457 C1QTNF8P60827 252 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 CCDC152Q4G0S7 254 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 C3orf67Q6ZVT6 689 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 TMC4Q7Z404 712 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 SUPT20HQ8NEM7 779 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 C7orf43Q8WVR3 580 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 DNAAF4Q8WXU2 420 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 ZNF277Q9NRM2 450 aaPredicted RBP13.85□□□□□ -0.19
CLIP3-203ENST00000586457 ANKRD36CQ5JPF3 1778 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 SLX4Q8IY92 1834 aa13.85□□□□□ -0.19
CLIP3-203ENST00000586457 CACNA1SQ13698 1873 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 GLTPD2A6NH11 291 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 PDE8AO60658 829 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 GRAPQ13588 217 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 OLFM4Q6UX06 510 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 DPP8Q6V1X1 898 aaPredicted RBP13.84□□□□□ -0.19
CLIP3-203ENST00000586457 SP8Q8IXZ3 490 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 GRAPLQ8TC17 118 aaPredicted RBP13.84□□□□□ -0.19
CLIP3-203ENST00000586457 RRAGCQ9HB90 399 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 ATP6V0A2Q9Y487 856 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 ABCC4O15439 1325 aa13.84□□□□□ -0.19
CLIP3-203ENST00000586457 IARSP41252 1262 aaKnown RBP13.83□□□□□ -0.2
CLIP3-203ENST00000586457 SLFN5Q08AF3 891 aa13.83□□□□□ -0.2
CLIP3-203ENST00000586457 SF3B3Q15393 1217 aaKnown RBP13.83□□□□□ -0.2
CLIP3-203ENST00000586457 CWF19L2Q2TBE0 894 aaKnown RBP13.83□□□□□ -0.2
CLIP3-203ENST00000586457 SLC4A10Q6U841 1118 aa13.83□□□□□ -0.2
CLIP3-203ENST00000586457 LARGE2Q8N3Y3 721 aa13.83□□□□□ -0.2
CLIP3-203ENST00000586457 MPNDQ8N594 471 aa13.83□□□□□ -0.2
CLIP3-203ENST00000586457 JARID2Q92833 1246 aaPredicted RBP13.83□□□□□ -0.2
CLIP3-203ENST00000586457 PSMD1Q99460 953 aa13.83□□□□□ -0.2
CLIP3-203ENST00000586457 ARFGEF2Q9Y6D5 1785 aa13.82□□□□□ -0.2
CLIP3-203ENST00000586457 NEURL1BA8MQ27 555 aa13.82□□□□□ -0.2
CLIP3-203ENST00000586457 VEGFAP15692 232 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms