RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 GRM8O00222 908 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 IL6STP40189 918 aaPredicted RBP7.69□□□□□ -1.18
LIG3-206ENST00000586058 RGS3P49796 1198 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 SIK1P57059 783 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 PROSER3Q2NL68 480 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 HSP90AB4PQ58FF6 505 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 BEND3Q5T5X7 828 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 ANKRD44Q8N8A2 993 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 CCDC87Q9NVE4 849 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 PCDHB15Q9Y5E8 787 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 COL15A1P39059 1388 aa7.69□□□□□ -1.18
LIG3-206ENST00000586058 EIF5BO60841 1220 aaKnown RBP7.68□□□□□ -1.18
LIG3-206ENST00000586058 HSP90B1P14625 803 aaKnown RBP7.68□□□□□ -1.18
LIG3-206ENST00000586058 RXRBP28702 533 aa7.68□□□□□ -1.18
LIG3-206ENST00000586058 TIE1P35590 1138 aa7.68□□□□□ -1.18
LIG3-206ENST00000586058 NUBP1P53384 320 aa7.68□□□□□ -1.18
LIG3-206ENST00000586058 OS9Q13438 667 aaPredicted RBP7.68□□□□□ -1.18
LIG3-206ENST00000586058 PDIA6Q15084 440 aa7.68□□□□□ -1.18
LIG3-206ENST00000586058 CEP85Q6P2H3 762 aa7.68□□□□□ -1.18
LIG3-206ENST00000586058 ZBTB3Q9H5J0 574 aa7.68□□□□□ -1.18
LIG3-206ENST00000586058 CWC25Q9NXE8 425 aaPredicted RBP7.68□□□□□ -1.18
LIG3-206ENST00000586058 LRRFIP2Q9Y608 721 aaKnown RBP7.68□□□□□ -1.18
LIG3-206ENST00000586058 POTEFA5A3E0 1075 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 NEURL1BA8MQ27 555 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 ONECUT3O60422 494 aaPredicted RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 IGHDP01880 384 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 A1BGP04217 495 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 CYP19A1P11511 503 aaPredicted RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 PRKCSHP14314 528 aaPredicted RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 CRKLP46109 303 aaKnown RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 PIP4K2AP48426 406 aaPredicted RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 CWF19L2Q2TBE0 894 aaKnown RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 DZIP3Q86Y13 1208 aaKnown RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 ERC1Q8IUD2 1116 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 SMC5Q8IY18 1101 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 CCNL1Q9UK58 526 aaPredicted RBP7.67□□□□□ -1.18
LIG3-206ENST00000586058 MYH7P12883 1935 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 MAP3K15Q6ZN16 1313 aa7.67□□□□□ -1.18
LIG3-206ENST00000586058 ARAP2Q8WZ64 1704 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 A0A1B0GUL6 1792 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 SRGAP3O43295 1099 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 GCKRQ14397 625 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 ANKRD45Q5TZF3 282 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 CHD1LQ86WJ1 897 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 CCDC191Q8NCU4 936 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 AK7Q96M32 723 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 BCL11BQ9C0K0 894 aaPredicted RBP7.66□□□□□ -1.18
LIG3-206ENST00000586058 PDZRN3Q9UPQ7 1066 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 ZBTB1Q9Y2K1 713 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 CNTNAP4Q9C0A0 1308 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 CACNA1SQ13698 1873 aa7.66□□□□□ -1.18
LIG3-206ENST00000586058 NBPF26B4DH59 902 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 ERVV-1B6SEH8 477 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 UTYO14607 1347 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 KCNQ2O43526 872 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 ATP8B2P98198 1209 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 NUCB1Q02818 461 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 NBPF14Q5TI25 921 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 NBPF10Q6P3W6 841 aaKnown RBP7.65□□□□□ -1.18
LIG3-206ENST00000586058 GIGYF2Q6Y7W6 1299 aaKnown RBP7.65□□□□□ -1.18
LIG3-206ENST00000586058 UBE3BQ7Z3V4 1068 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 NBPF15Q8N660 670 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 GPATCH3Q96I76 525 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 LRRCC1Q9C099 1032 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 USP44Q9H0E7 712 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 UPF2Q9HAU5 1272 aaKnown RBP7.65□□□□□ -1.18
LIG3-206ENST00000586058 CHMP3Q9Y3E7 222 aa7.65□□□□□ -1.18
LIG3-206ENST00000586058 TTLL13PA6NNM8 815 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 ATP5J2-PTCD1G3V325 749 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 APBB1O00213 710 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 NPHP1O15259 732 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 RAB11FIP3O75154 756 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 NBPF7P0C2Y1 421 aaPredicted RBP7.64□□□□□ -1.19
LIG3-206ENST00000586058 TCIRG1Q13488 830 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 PARP10Q53GL7 1025 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 SLC27A3Q5K4L6 730 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 CASC1Q6TDU7 716 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 TTLL7Q6ZT98 887 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 PPP1R42Q7Z4L9 355 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 LNPKQ9C0E8 428 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 BCL11AQ9H165 835 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 DCTPP1Q9H773 170 aa7.64□□□□□ -1.19
LIG3-206ENST00000586058 RTCBQ9Y3I0 505 aaKnown RBP7.64□□□□□ -1.19
LIG3-206ENST00000586058 RGL2O15211 777 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 GNPATO15228 680 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 ZPR1O75312 459 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 SURF6O75683 361 aaKnown RBP7.63□□□□□ -1.19
LIG3-206ENST00000586058 IGKV5-2P06315 115 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 G3BP1Q13283 466 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIG3-206ENST00000586058 SF3B2Q13435 895 aaKnown RBP7.63□□□□□ -1.19
LIG3-206ENST00000586058 MTX1Q13505 466 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 FAM161AQ3B820 660 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 TAF7LQ5H9L4 462 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 FAM182BQ5T319 152 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 RC3H1Q5TC82 1133 aaKnown RBP7.63□□□□□ -1.19
LIG3-206ENST00000586058 LRP10Q7Z4F1 713 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 KIF1BPQ96EK5 621 aa7.63□□□□□ -1.19
LIG3-206ENST00000586058 BICC1Q9H694 974 aaKnown RBP7.63□□□□□ -1.19
LIG3-206ENST00000586058 CDHR2Q9BYE9 1310 aa7.62□□□□□ -1.19
LIG3-206ENST00000586058 TRIM37O94972 964 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms