RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 NBPF10Q6P3W6 841 aaKnown RBP12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 DZIP1LQ8IYY4 767 aaKnown RBP12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 NBPF15Q8N660 670 aa12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 LARP6Q9BRS8 491 aaKnown RBP12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 TNNQ9UQP3 1299 aa12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 IBTKQ9P2D0 1353 aaPredicted RBP12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 C4BP0C0L5 1744 aa12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 FOXK1P85037 733 aa12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 ITPK1Q13572 414 aa12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 PHAXQ9H814 394 aaKnown RBP12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 BCORQ6W2J9 1755 aa12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 CNTNAP4Q9C0A0 1308 aa12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 ADCY9O60503 1353 aa12.55□□□□□ -0.4
SMCHD1-212ENST00000585229 ATP10DQ9P241 1426 aa12.54□□□□□ -0.4
SMCHD1-212ENST00000585229 TRIM37O94972 964 aa12.54□□□□□ -0.4
SMCHD1-212ENST00000585229 ANXA1P04083 346 aa12.54□□□□□ -0.4
SMCHD1-212ENST00000585229 A1BGP04217 495 aa12.54□□□□□ -0.4
SMCHD1-212ENST00000585229 ATP6V1AP38606 617 aa12.54□□□□□ -0.4
SMCHD1-212ENST00000585229 PLSCR1O15162 318 aa12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 IRX6P78412 446 aaPredicted RBP12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 MVPQ14764 893 aaKnown RBP12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 RC3H1Q5TC82 1133 aaKnown RBP12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 INTS3Q68E01 1043 aaKnown RBP12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 INTS5Q6P9B9 1019 aaKnown RBP12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 LINC00116Q8NCU8 138 aa12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 PANK1Q8TE04 598 aa12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 CRBNQ96SW2 442 aa12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 ANKRD36CQ5JPF3 1778 aa12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 UBR3Q6ZT12 1888 aa12.53□□□□□ -0.4
SMCHD1-212ENST00000585229 SCN7AQ01118 1682 aa12.52□□□□□ -0.4
SMCHD1-212ENST00000585229 IL6STP40189 918 aaPredicted RBP12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 CRKLP46109 303 aaKnown RBP12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 FKBP5Q13451 457 aaPredicted RBP12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 SLC27A3Q5K4L6 730 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 PPP1R15BQ5SWA1 713 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 FTSJ3Q8IY81 847 aaKnown RBP12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 TMEM57Q8N5G2 664 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 XAGE3Q8WTP9 111 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 DDX27Q96GQ7 796 aaKnown RBP12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 CCDC87Q9NVE4 849 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 ZBTB1Q9Y2K1 713 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 GTF3C3Q9Y5Q9 886 aa12.52□□□□□ -0.41
SMCHD1-212ENST00000585229 NUP98P52948 1817 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 DDX58O95786 925 aaKnown RBP12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 MYL6BP14649 208 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 HOXB3P14651 431 aaPredicted RBP12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 HMGB2P26583 209 aaKnown RBP12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 EIF5P55010 431 aaKnown RBP12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 AAMPQ13685 434 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 KSR2Q6VAB6 950 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 COPS6Q7L5N1 327 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 PLPP6Q8IY26 295 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 EXOC6Q8TAG9 804 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 CLUAP1Q96AJ1 413 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 CCNL1Q9UK58 526 aaPredicted RBP12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 C4AP0C0L4 1744 aa12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 AFDNP55196 1824 aaKnown RBP12.51□□□□□ -0.41
SMCHD1-212ENST00000585229 PI4KAP2A4QPH2 592 aa12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 PIP4K2AP48426 406 aaPredicted RBP12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 CCT4P50991 539 aaKnown RBP12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 PI4KAP1Q8N8J0 262 aa12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 DNAAF4Q8WXU2 420 aa12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 DDX19BQ9UMR2 479 aa12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 COG6Q9Y2V7 657 aa12.5□□□□□ -0.41
SMCHD1-212ENST00000585229 TUBGCP6Q96RT7 1819 aa12.49□□□□□ -0.41
SMCHD1-212ENST00000585229 QSER1Q2KHR3 1735 aa12.49□□□□□ -0.41
SMCHD1-212ENST00000585229 F6X3S4 739 aa12.49□□□□□ -0.41
SMCHD1-212ENST00000585229 PLBD2Q8NHP8 589 aa12.49□□□□□ -0.41
SMCHD1-212ENST00000585229 LRRC4BQ9NT99 713 aa12.49□□□□□ -0.41
SMCHD1-212ENST00000585229 COL15A1P39059 1388 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 TXNRD1Q16881 649 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 BEND3Q5T5X7 828 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 TTLL7Q6ZT98 887 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 ANKRD13DQ6ZTN6 518 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 ITPRIPQ8IWB1 547 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 MAP3K2Q9Y2U5 619 aa12.48□□□□□ -0.41
SMCHD1-212ENST00000585229 MAP3K15Q6ZN16 1313 aa12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 RPS6KA4O75676 772 aa12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 ALDH1L1O75891 902 aa12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 APBA3O96018 575 aa12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 AIMP1Q12904 312 aaKnown RBP12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 METTL22Q9BUU2 404 aaPredicted RBP12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 CHMP4BQ9H444 224 aaKnown RBP12.47□□□□□ -0.41
SMCHD1-212ENST00000585229 ERVV-1B6SEH8 477 aa12.46□□□□□ -0.41
SMCHD1-212ENST00000585229 ZBTB7BO15156 539 aaPredicted RBP12.46□□□□□ -0.41
SMCHD1-212ENST00000585229 KCNQ4P56696 695 aa12.46□□□□□ -0.41
SMCHD1-212ENST00000585229 RIC3Q7Z5B4 369 aa12.46□□□□□ -0.41
SMCHD1-212ENST00000585229 LINS1Q8NG48 757 aa12.46□□□□□ -0.41
SMCHD1-212ENST00000585229 ZBTB40Q9NUA8 1239 aa12.46□□□□□ -0.41
SMCHD1-212ENST00000585229 A0A087WZG4 1122 aa12.45□□□□□ -0.42
SMCHD1-212ENST00000585229 IGKV5-2P06315 115 aa12.45□□□□□ -0.42
SMCHD1-212ENST00000585229 KIF6Q6ZMV9 814 aa12.45□□□□□ -0.42
SMCHD1-212ENST00000585229 SRCIN1Q9C0H9 1055 aa12.45□□□□□ -0.42
SMCHD1-212ENST00000585229 PPP4R2Q9NY27 417 aa12.45□□□□□ -0.42
SMCHD1-212ENST00000585229 COL24A1Q17RW2 1714 aa12.45□□□□□ -0.42
SMCHD1-212ENST00000585229 UTYO14607 1347 aa12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 CAMTA2O94983 1202 aa12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 TRIM28Q13263 835 aaKnown RBP12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 SLC4A10Q6U841 1118 aa12.44□□□□□ -0.42
SMCHD1-212ENST00000585229 GIGYF2Q6Y7W6 1299 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms