RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 WWC1Q8IX03 1113 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 RTKN2Q8IZC4 609 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 NMRK2Q9NPI5 230 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 ABCC12Q96J65 1359 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 NUP98P52948 1817 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 COL11A2P13942 1736 aaPredicted RBP15.99■□□□□ 0.15
SS18-225ENST00000585121 CCDC30Q5VVM6 783 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 NLRP10Q86W26 655 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 C7orf43Q8WVR3 580 aa15.99■□□□□ 0.15
SS18-225ENST00000585121 TMX4Q9H1E5 349 aaPredicted RBP15.99■□□□□ 0.15
SS18-225ENST00000585121 TRMT112Q9UI30 125 aaKnown RBP15.99■□□□□ 0.15
SS18-225ENST00000585121 RIC1Q4ADV7 1423 aa15.98■□□□□ 0.15
SS18-225ENST00000585121 TOMM70O94826 608 aa15.98■□□□□ 0.15
SS18-225ENST00000585121 PRELPP51888 382 aa15.98■□□□□ 0.15
SS18-225ENST00000585121 GOLGA2Q08379 1002 aa15.98■□□□□ 0.15
SS18-225ENST00000585121 SLC10A5Q5PT55 438 aa15.98■□□□□ 0.15
SS18-225ENST00000585121 IL16Q14005 1332 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 GLTPD2A6NH11 291 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 HOXA10P31260 410 aaPredicted RBP15.97■□□□□ 0.15
SS18-225ENST00000585121 CC2D2BQ6DHV5 1058 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 RIC3Q7Z5B4 369 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 C8orf58Q8NAV2 365 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 CRAMP1Q96RY5 1269 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 RRAGCQ9HB90 399 aa15.97■□□□□ 0.15
SS18-225ENST00000585121 FKBP4Q02790 459 aaKnown RBP eCLIP15.96■□□□□ 0.15
SS18-225ENST00000585121 GRIPAP1Q4V328 841 aa15.96■□□□□ 0.15
SS18-225ENST00000585121 FAM9BQ8IZU0 186 aa15.96■□□□□ 0.15
SS18-225ENST00000585121 SLX4Q8IY92 1834 aa15.96■□□□□ 0.15
SS18-225ENST00000585121 SH3TC1Q8TE82 1336 aa15.95■□□□□ 0.14
SS18-225ENST00000585121 TSR2Q969E8 191 aaKnown RBP15.95■□□□□ 0.14
SS18-225ENST00000585121 STK31Q9BXU1 1019 aa15.95■□□□□ 0.14
SS18-225ENST00000585121 SALL2Q9Y467 1007 aaPredicted RBP15.95■□□□□ 0.14
SS18-225ENST00000585121 SBF1O95248 1867 aa15.95■□□□□ 0.14
SS18-225ENST00000585121 DDX58O95786 925 aaKnown RBP15.94■□□□□ 0.14
SS18-225ENST00000585121 WDR63Q8IWG1 891 aa15.94■□□□□ 0.14
SS18-225ENST00000585121 HCLS1P14317 486 aaPredicted RBP15.94■□□□□ 0.14
SS18-225ENST00000585121 VEGFAP15692 232 aaPredicted RBP15.94■□□□□ 0.14
SS18-225ENST00000585121 RBM46Q8TBY0 533 aaKnown RBP15.94■□□□□ 0.14
SS18-225ENST00000585121 ISCA1Q9BUE6 129 aa15.94■□□□□ 0.14
SS18-225ENST00000585121 PHAXQ9H814 394 aaKnown RBP15.94■□□□□ 0.14
SS18-225ENST00000585121 ATP5J2-PTCD1G3V325 749 aa15.93■□□□□ 0.14
SS18-225ENST00000585121 PPEF1O14829 653 aaPredicted RBP15.93■□□□□ 0.14
SS18-225ENST00000585121 HSPA6P17066 643 aa15.93■□□□□ 0.14
SS18-225ENST00000585121 OLFM4Q6UX06 510 aa15.93■□□□□ 0.14
SS18-225ENST00000585121 C3orf67Q6ZVT6 689 aa15.93■□□□□ 0.14
SS18-225ENST00000585121 DDX46Q7L014 1031 aaKnown RBP15.93■□□□□ 0.14
SS18-225ENST00000585121 SYNE4Q8N205 404 aa15.93■□□□□ 0.14
SS18-225ENST00000585121 ZNF277Q9NRM2 450 aaPredicted RBP15.93■□□□□ 0.14
SS18-225ENST00000585121 TCERG1O14776 1098 aaKnown RBP15.92■□□□□ 0.14
SS18-225ENST00000585121 HSP90B1P14625 803 aaKnown RBP15.92■□□□□ 0.14
SS18-225ENST00000585121 TRIM28Q13263 835 aaKnown RBP15.92■□□□□ 0.14
SS18-225ENST00000585121 TWISTNBQ3B726 338 aaPredicted RBP15.92■□□□□ 0.14
SS18-225ENST00000585121 TSPYL6Q8N831 410 aa15.92■□□□□ 0.14
SS18-225ENST00000585121 PSMD1Q99460 953 aa15.92■□□□□ 0.14
SS18-225ENST00000585121 ARFGEF2Q9Y6D5 1785 aa15.91■□□□□ 0.14
SS18-225ENST00000585121 FER1L6Q2WGJ9 1857 aa15.91■□□□□ 0.14
SS18-225ENST00000585121 BBOX1O75936 387 aa15.91■□□□□ 0.14
SS18-225ENST00000585121 TNRC6CQ9HCJ0 1690 aaKnown RBP15.9■□□□□ 0.14
SS18-225ENST00000585121 IARSP41252 1262 aaKnown RBP15.9■□□□□ 0.14
SS18-225ENST00000585121 FSTL1Q12841 308 aa15.9■□□□□ 0.14
SS18-225ENST00000585121 JDP2Q8WYK2 163 aa15.9■□□□□ 0.14
SS18-225ENST00000585121 FAM89AQ96GI7 184 aa15.9■□□□□ 0.14
SS18-225ENST00000585121 MYD88Q99836 296 aa15.9■□□□□ 0.14
SS18-225ENST00000585121 CACNA1SQ13698 1873 aa15.9■□□□□ 0.14
SS18-225ENST00000585121 ZNF428Q96B54 188 aa15.89■□□□□ 0.13
SS18-225ENST00000585121 ATP6V0A2Q9Y487 856 aa15.89■□□□□ 0.13
SS18-225ENST00000585121 ABCC4O15439 1325 aa15.89■□□□□ 0.13
SS18-225ENST00000585121 CCDC191Q8NCU4 936 aa15.89■□□□□ 0.13
SS18-225ENST00000585121 SMC1BQ8NDV3 1235 aa15.89■□□□□ 0.13
SS18-225ENST00000585121 MYH16Q9H6N6 1097 aa15.89■□□□□ 0.13
SS18-225ENST00000585121 FANCIQ9NVI1 1328 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 IRS4O14654 1257 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 DDNO94850 711 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 SLC4A2P04920 1241 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 APLP1P51693 650 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 NEXNQ0ZGT2 675 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 GRAPQ13588 217 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 RTL5Q5HYW3 569 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 KSR2Q6VAB6 950 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 TMC4Q7Z404 712 aa15.88■□□□□ 0.13
SS18-225ENST00000585121 ZBTB38Q8NAP3 1195 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 GRAPLQ8TC17 118 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 METTL22Q9BUU2 404 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 CWC25Q9NXE8 425 aaPredicted RBP15.88■□□□□ 0.13
SS18-225ENST00000585121 ANKRD36CQ5JPF3 1778 aa15.87■□□□□ 0.13
SS18-225ENST00000585121 SP8Q8IXZ3 490 aa15.87■□□□□ 0.13
SS18-225ENST00000585121 LARGE2Q8N3Y3 721 aa15.87■□□□□ 0.13
SS18-225ENST00000585121 SUPT20HQ8NEM7 779 aa15.87■□□□□ 0.13
SS18-225ENST00000585121 MAP3K2Q9Y2U5 619 aa15.87■□□□□ 0.13
SS18-225ENST00000585121 CCDC88AQ3V6T2 1871 aa15.87■□□□□ 0.13
SS18-225ENST00000585121 TIAM2Q8IVF5 1701 aa15.86■□□□□ 0.13
SS18-225ENST00000585121 PI4KAP2A4QPH2 592 aa15.86■□□□□ 0.13
SS18-225ENST00000585121 IQCA1LA6NCM1 817 aa15.86■□□□□ 0.13
SS18-225ENST00000585121 EIF6P56537 245 aaKnown RBP15.86■□□□□ 0.13
SS18-225ENST00000585121 SF3B3Q15393 1217 aaKnown RBP15.86■□□□□ 0.13
SS18-225ENST00000585121 PI4KAP1Q8N8J0 262 aa15.86■□□□□ 0.13
SS18-225ENST00000585121 PCCAP05165 728 aaPredicted RBP15.85■□□□□ 0.13
SS18-225ENST00000585121 EXOSC9Q06265 439 aaKnown RBP15.85■□□□□ 0.13
SS18-225ENST00000585121 DPP8Q6V1X1 898 aaPredicted RBP15.85■□□□□ 0.13
SS18-225ENST00000585121 MPNDQ8N594 471 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms