RNA–Protein interactions for RNA: ENST00000584939.1

ITGB4-213, Transcript of integrin subunit beta 4, humanhuman

TSL 3

Gene ITGB4, Length 603 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-213ENST00000584939 RPGRQ92834 1020 aaKnown RBP22.28■■□□□ 1.16
ITGB4-213ENST00000584939 HOXA10P31260 410 aaPredicted RBP22.27■■□□□ 1.16
ITGB4-213ENST00000584939 FER1L6Q2WGJ9 1857 aa22.27■■□□□ 1.16
ITGB4-213ENST00000584939 RIC1Q4ADV7 1423 aa22.27■■□□□ 1.16
ITGB4-213ENST00000584939 RTKN2Q8IZC4 609 aa22.27■■□□□ 1.16
ITGB4-213ENST00000584939 DBF4Q9UBU7 674 aaPredicted RBP22.27■■□□□ 1.16
ITGB4-213ENST00000584939 VEGFAP15692 232 aaPredicted RBP22.26■■□□□ 1.15
ITGB4-213ENST00000584939 FKBP4Q02790 459 aaKnown RBP eCLIP22.26■■□□□ 1.15
ITGB4-213ENST00000584939 TCIRG1Q13488 830 aa22.26■■□□□ 1.15
ITGB4-213ENST00000584939 C3orf67Q6ZVT6 689 aa22.26■■□□□ 1.15
ITGB4-213ENST00000584939 TNRC6CQ9HCJ0 1690 aaKnown RBP22.26■■□□□ 1.15
ITGB4-213ENST00000584939 ARFGEF2Q9Y6D5 1785 aa22.25■■□□□ 1.15
ITGB4-213ENST00000584939 SLC10A5Q5PT55 438 aa22.25■■□□□ 1.15
ITGB4-213ENST00000584939 NLRP10Q86W26 655 aa22.25■■□□□ 1.15
ITGB4-213ENST00000584939 RBM17Q96I25 401 aaKnown RBP22.25■■□□□ 1.15
ITGB4-213ENST00000584939 NLRP3Q96P20 1036 aa22.25■■□□□ 1.15
ITGB4-213ENST00000584939 CACNA1SQ13698 1873 aa22.24■■□□□ 1.15
ITGB4-213ENST00000584939 PLBD2Q8NHP8 589 aa22.24■■□□□ 1.15
ITGB4-213ENST00000584939 CRAMP1Q96RY5 1269 aa22.24■■□□□ 1.15
ITGB4-213ENST00000584939 ZNF277Q9NRM2 450 aaPredicted RBP22.24■■□□□ 1.15
ITGB4-213ENST00000584939 HYPKQ9NX55 129 aa22.24■■□□□ 1.15
ITGB4-213ENST00000584939 CCDC88AQ3V6T2 1871 aa22.24■■□□□ 1.15
ITGB4-213ENST00000584939 ELL2O00472 640 aaPredicted RBP22.23■■□□□ 1.15
ITGB4-213ENST00000584939 FSTL1Q12841 308 aa22.23■■□□□ 1.15
ITGB4-213ENST00000584939 ANKRD13DQ6ZTN6 518 aa22.23■■□□□ 1.15
ITGB4-213ENST00000584939 MRS2Q9HD23 443 aa22.23■■□□□ 1.15
ITGB4-213ENST00000584939 TIAM2Q8IVF5 1701 aa22.23■■□□□ 1.15
ITGB4-213ENST00000584939 APLP1P51693 650 aa22.22■■□□□ 1.15
ITGB4-213ENST00000584939 TRMT112Q9UI30 125 aaKnown RBP22.22■■□□□ 1.15
ITGB4-213ENST00000584939 RNF123Q5XPI4 1314 aa22.22■■□□□ 1.15
ITGB4-213ENST00000584939 POTECB2RU33 542 aa22.21■■□□□ 1.15
ITGB4-213ENST00000584939 CC2D2BQ6DHV5 1058 aa22.21■■□□□ 1.15
ITGB4-213ENST00000584939 SYNE4Q8N205 404 aa22.21■■□□□ 1.15
ITGB4-213ENST00000584939 C8orf58Q8NAV2 365 aa22.21■■□□□ 1.15
ITGB4-213ENST00000584939 DDNO94850 711 aaPredicted RBP22.2■■□□□ 1.14
ITGB4-213ENST00000584939 SMC1BQ8NDV3 1235 aa22.2■■□□□ 1.14
ITGB4-213ENST00000584939 TCERG1O14776 1098 aaKnown RBP22.19■■□□□ 1.14
ITGB4-213ENST00000584939 PPEF1O14829 653 aaPredicted RBP22.19■■□□□ 1.14
ITGB4-213ENST00000584939 HCLS1P14317 486 aaPredicted RBP22.19■■□□□ 1.14
ITGB4-213ENST00000584939 ZNF428Q96B54 188 aa22.19■■□□□ 1.14
ITGB4-213ENST00000584939 PSMD1Q99460 953 aa22.19■■□□□ 1.14
ITGB4-213ENST00000584939 SH3TC1Q8TE82 1336 aa22.19■■□□□ 1.14
ITGB4-213ENST00000584939 IARSP41252 1262 aaKnown RBP22.18■■□□□ 1.14
ITGB4-213ENST00000584939 CCDC27Q2M243 656 aa22.18■■□□□ 1.14
ITGB4-213ENST00000584939 ATP5J2-PTCD1G3V325 749 aa22.17■■□□□ 1.14
ITGB4-213ENST00000584939 GRIPAP1Q4V328 841 aa22.17■■□□□ 1.14
ITGB4-213ENST00000584939 WWC1Q8IX03 1113 aa22.17■■□□□ 1.14
ITGB4-213ENST00000584939 ISCA1Q9BUE6 129 aa22.17■■□□□ 1.14
ITGB4-213ENST00000584939 DICER1Q9UPY3 1922 aaKnown RBP22.17■■□□□ 1.14
ITGB4-213ENST00000584939 SNED1Q8TER0 1413 aa22.16■■□□□ 1.14
ITGB4-213ENST00000584939 SLC51AQ86UW1 340 aa22.16■■□□□ 1.14
ITGB4-213ENST00000584939 PHAXQ9H814 394 aaKnown RBP22.16■■□□□ 1.14
ITGB4-213ENST00000584939 WDR90Q96KV7 1748 aa22.15■■□□□ 1.14
ITGB4-213ENST00000584939 GOLGA2Q08379 1002 aa22.15■■□□□ 1.14
ITGB4-213ENST00000584939 RIC3Q7Z5B4 369 aa22.15■■□□□ 1.14
ITGB4-213ENST00000584939 TSR2Q969E8 191 aaKnown RBP22.15■■□□□ 1.14
ITGB4-213ENST00000584939 TMX4Q9H1E5 349 aaPredicted RBP22.15■■□□□ 1.14
ITGB4-213ENST00000584939 ABCC4O15439 1325 aa22.14■■□□□ 1.14
ITGB4-213ENST00000584939 ZNF541Q9H0D2 1346 aa22.14■■□□□ 1.14
ITGB4-213ENST00000584939 CCDC30Q5VVM6 783 aa22.14■■□□□ 1.13
ITGB4-213ENST00000584939 TSPYL6Q8N831 410 aa22.14■■□□□ 1.13
ITGB4-213ENST00000584939 CHMP4AQ9BY43 222 aa22.14■■□□□ 1.13
ITGB4-213ENST00000584939 ATP6V0A2Q9Y487 856 aa22.14■■□□□ 1.13
ITGB4-213ENST00000584939 ANKRD36CQ5JPF3 1778 aa22.14■■□□□ 1.13
ITGB4-213ENST00000584939 FZD9O00144 591 aa22.13■■□□□ 1.13
ITGB4-213ENST00000584939 BBOX1O75936 387 aa22.13■■□□□ 1.13
ITGB4-213ENST00000584939 TRIM28Q13263 835 aaKnown RBP22.13■■□□□ 1.13
ITGB4-213ENST00000584939 DDX46Q7L014 1031 aaKnown RBP22.13■■□□□ 1.13
ITGB4-213ENST00000584939 JDP2Q8WYK2 163 aa22.13■■□□□ 1.13
ITGB4-213ENST00000584939 FAM89AQ96GI7 184 aa22.13■■□□□ 1.13
ITGB4-213ENST00000584939 NCBP3Q53F19 620 aaKnown RBP22.12■■□□□ 1.13
ITGB4-213ENST00000584939 L3MBTL3Q96JM7 780 aaPredicted RBP22.12■■□□□ 1.13
ITGB4-213ENST00000584939 IQCA1LA6NCM1 817 aa22.11■■□□□ 1.13
ITGB4-213ENST00000584939 DNAJC5GQ8N7S2 189 aa22.11■■□□□ 1.13
ITGB4-213ENST00000584939 IL16Q14005 1332 aa22.1■■□□□ 1.13
ITGB4-213ENST00000584939 HTRA3P83110 453 aa22.1■■□□□ 1.13
ITGB4-213ENST00000584939 RTL5Q5HYW3 569 aaPredicted RBP22.1■■□□□ 1.13
ITGB4-213ENST00000584939 SP8Q8IXZ3 490 aa22.1■■□□□ 1.13
ITGB4-213ENST00000584939 LARGE2Q8N3Y3 721 aa22.1■■□□□ 1.13
ITGB4-213ENST00000584939 SALL2Q9Y467 1007 aaPredicted RBP22.1■■□□□ 1.13
ITGB4-213ENST00000584939 DDX58O95786 925 aaKnown RBP22.09■■□□□ 1.13
ITGB4-213ENST00000584939 GRAPQ13588 217 aa22.09■■□□□ 1.13
ITGB4-213ENST00000584939 GRAPLQ8TC17 118 aaPredicted RBP22.09■■□□□ 1.13
ITGB4-213ENST00000584939 MYD88Q99836 296 aa22.09■■□□□ 1.13
ITGB4-213ENST00000584939 EIF6P56537 245 aaKnown RBP22.08■■□□□ 1.13
ITGB4-213ENST00000584939 SF3B3Q15393 1217 aaKnown RBP22.08■■□□□ 1.13
ITGB4-213ENST00000584939 TAF1DQ9H5J8 278 aaPredicted RBP22.08■■□□□ 1.13
ITGB4-213ENST00000584939 IRS4O14654 1257 aaPredicted RBP22.07■■□□□ 1.12
ITGB4-213ENST00000584939 POTEIP0CG38 1075 aa22.07■■□□□ 1.12
ITGB4-213ENST00000584939 POTEJP0CG39 1038 aa22.07■■□□□ 1.12
ITGB4-213ENST00000584939 TWISTNBQ3B726 338 aaPredicted RBP22.07■■□□□ 1.12
ITGB4-213ENST00000584939 CHADLQ6NUI6 762 aa22.07■■□□□ 1.12
ITGB4-213ENST00000584939 GPC2Q8N158 579 aa22.07■■□□□ 1.12
ITGB4-213ENST00000584939 STK31Q9BXU1 1019 aa22.07■■□□□ 1.12
ITGB4-213ENST00000584939 CEP350Q5VT06 3117 aa22.06■■□□□ 1.12
ITGB4-213ENST00000584939 PPIP5K2O43314 1243 aa22.06■■□□□ 1.12
ITGB4-213ENST00000584939 DPP8Q6V1X1 898 aaPredicted RBP22.06■■□□□ 1.12
ITGB4-213ENST00000584939 NIM1KQ8IY84 436 aa22.06■■□□□ 1.12
ITGB4-213ENST00000584939 MPNDQ8N594 471 aa22.06■■□□□ 1.12
ITGB4-213ENST00000584939 ZBTB38Q8NAP3 1195 aaPredicted RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms