RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 ZNF710Q8N1W2 664 aa14.52□□□□□ -0.08
SHMT1-208ENST00000582352 LGR6Q9HBX8 967 aa14.52□□□□□ -0.08
SHMT1-208ENST00000582352 DBF4Q9UBU7 674 aaPredicted RBP14.52□□□□□ -0.08
SHMT1-208ENST00000582352 PA2G4Q9UQ80 394 aaKnown RBP14.52□□□□□ -0.08
SHMT1-208ENST00000582352 BTBD11A6QL63 1104 aa14.52□□□□□ -0.09
SHMT1-208ENST00000582352 ALDH1L1O75891 902 aa14.52□□□□□ -0.09
SHMT1-208ENST00000582352 PYCARDQ9ULZ3 195 aa14.52□□□□□ -0.09
SHMT1-208ENST00000582352 MAP3K2Q9Y2U5 619 aa14.52□□□□□ -0.09
SHMT1-208ENST00000582352 GOLGA6L4A6NEF3 574 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 KCNQ3O43525 872 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 ANKRD1Q15327 319 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 RNF20Q5VTR2 975 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 NMIQ13287 307 aaPredicted RBP14.51□□□□□ -0.09
SHMT1-208ENST00000582352 FAM227BQ96M60 508 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 TYRO3Q06418 890 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 CAMK4Q16566 473 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 BLOC1S2Q6QNY1 142 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 TNMDQ9H2S6 317 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 SLIT1O75093 1534 aa14.51□□□□□ -0.09
SHMT1-208ENST00000582352 SLC27A2O14975 620 aa14.5□□□□□ -0.09
SHMT1-208ENST00000582352 MAP4K1Q92918 833 aa14.5□□□□□ -0.09
SHMT1-208ENST00000582352 SCAND2PQ9GZW5 306 aaPredicted RBP14.5□□□□□ -0.09
SHMT1-208ENST00000582352 LMO7Q8WWI1 1683 aa14.5□□□□□ -0.09
SHMT1-208ENST00000582352 LIG1P18858 919 aa14.5□□□□□ -0.09
SHMT1-208ENST00000582352 ZNF530Q6P9A1 599 aaPredicted RBP14.5□□□□□ -0.09
SHMT1-208ENST00000582352 MRVI1Q9Y6F6 885 aa14.5□□□□□ -0.09
SHMT1-208ENST00000582352 SPATA32Q96LK8 384 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 FSD1Q9BTV5 496 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 NPHP3Q7Z494 1330 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 FAM177BA6PVY3 158 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 G3BP1Q13283 466 aaKnown RBP eCLIP14.49□□□□□ -0.09
SHMT1-208ENST00000582352 CWF19L2Q2TBE0 894 aaKnown RBP14.49□□□□□ -0.09
SHMT1-208ENST00000582352 NBPF6Q5VWK0 638 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 LUZP1Q86V48 1076 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 IP6K1Q92551 441 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 NBPF4Q96M43 638 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 BCL2L12Q9HB09 334 aa14.49□□□□□ -0.09
SHMT1-208ENST00000582352 ARHGAP23Q9P227 1491 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 ADGRL3Q9HAR2 1447 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 PTGS1P23219 599 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 AKAP4Q5JQC9 854 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 FAM173BQ6P4H8 233 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 KSR2Q6VAB6 950 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 CKAP2LQ8IYA6 745 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 DDX19AQ9NUU7 478 aaKnown RBP14.48□□□□□ -0.09
SHMT1-208ENST00000582352 DACT1Q9NYF0 836 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 MPRIPQ6WCQ1 1025 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 TCEANC2Q96MN5 208 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 PRDM10Q9NQV6 1147 aa14.48□□□□□ -0.09
SHMT1-208ENST00000582352 A0A0D9SFI3 127 aa14.47□□□□□ -0.09
SHMT1-208ENST00000582352 RPS6KB1P23443 525 aa14.47□□□□□ -0.09
SHMT1-208ENST00000582352 ANO6Q4KMQ2 910 aa14.47□□□□□ -0.09
SHMT1-208ENST00000582352 DRC7Q8IY82 874 aa14.47□□□□□ -0.09
SHMT1-208ENST00000582352 PRDM4Q9UKN5 801 aa14.47□□□□□ -0.09
SHMT1-208ENST00000582352 SETD1BQ9UPS6 1966 aaKnown RBP14.47□□□□□ -0.09
SHMT1-208ENST00000582352 RIOK3O14730 519 aaKnown RBP14.47□□□□□ -0.09
SHMT1-208ENST00000582352 CEBPAP49715 358 aaPredicted RBP14.47□□□□□ -0.09
SHMT1-208ENST00000582352 CCDC8Q9H0W5 538 aaPredicted RBP14.47□□□□□ -0.09
SHMT1-208ENST00000582352 GRM8O00222 908 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 PROSER3Q2NL68 480 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 PPP4R3BQ5MIZ7 849 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 EAF2Q96CJ1 260 aaPredicted RBP14.46□□□□□ -0.09
SHMT1-208ENST00000582352 SNRKQ9NRH2 765 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 HMG20BQ9P0W2 317 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 NPHP4O75161 1426 aaPredicted RBP14.46□□□□□ -0.09
SHMT1-208ENST00000582352 PLEKHO1Q53GL0 409 aaPredicted RBP14.46□□□□□ -0.09
SHMT1-208ENST00000582352 C1orf141Q5JVX7 400 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 CBX8Q9HC52 389 aa14.46□□□□□ -0.09
SHMT1-208ENST00000582352 MED23Q9ULK4 1368 aa14.46□□□□□ -0.1
SHMT1-208ENST00000582352 NFAT5O94916 1531 aa14.46□□□□□ -0.1
SHMT1-208ENST00000582352 SASH1O94885 1247 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 STK3Q13188 491 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 LARP1Q6PKG0 1096 aaKnown RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 PDCL2Q8N4E4 241 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 LINS1Q8NG48 757 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 BICD2Q8TD16 824 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 LEO1Q8WVC0 666 aaPredicted RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 SUCLG2Q96I99 432 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 BOLA2Q9H3K6 86 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 BICC1Q9H694 974 aaKnown RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 TLR7Q9NYK1 1049 aaKnown RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 NCAPD2Q15021 1401 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 DDX58O95786 925 aaKnown RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 TRIM5Q9C035 493 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 SIL1Q9H173 461 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 CLSTN2Q9H4D0 955 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 TFIP11Q9UBB9 837 aaKnown RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 GIGYF1O75420 1035 aaPredicted RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 KCNA6P17658 529 aa14.45□□□□□ -0.1
SHMT1-208ENST00000582352 COL9A3Q14050 684 aaPredicted RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 TOB2Q14106 344 aaPredicted RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 ALDH8A1Q9H2A2 487 aaPredicted RBP14.45□□□□□ -0.1
SHMT1-208ENST00000582352 RGPD2P0DJD1 1756 aa14.44□□□□□ -0.1
SHMT1-208ENST00000582352 PLPPR3Q6T4P5 718 aa14.44□□□□□ -0.1
SHMT1-208ENST00000582352 CCDC186Q7Z3E2 898 aa14.44□□□□□ -0.1
SHMT1-208ENST00000582352 KIF13AQ9H1H9 1805 aa14.44□□□□□ -0.1
SHMT1-208ENST00000582352 AMOTQ4VCS5 1084 aa14.44□□□□□ -0.1
SHMT1-208ENST00000582352 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-208ENST00000582352 RNMTO43148 476 aaKnown RBP14.43□□□□□ -0.1
SHMT1-208ENST00000582352 KRT32Q14532 448 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms