RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SFSWAPQ12872 951 aaKnown RBP8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 LAMC2Q13753 1193 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 CNTNAP3BQ96NU0 1288 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 CNTNAP3Q9BZ76 1288 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 STRN4Q9NRL3 753 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 IVNS1ABPQ9Y6Y0 642 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 OPLAHO14841 1288 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 ICMTO60725 284 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 FAM13AO94988 1023 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 CD33P20138 364 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 CTBSQ01459 385 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 NOM1Q5C9Z4 860 aaKnown RBP8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 MBIPQ9NS73 344 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 HCN2Q9UL51 889 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 KCNH4Q9UQ05 1017 aa8.39□□□□□ -1.07
SMCHD1-204ENST00000581226 H3BRB1 525 aa8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 BMP4P12644 408 aa8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 EPB42P16452 691 aa8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 ZAP70P43403 619 aa8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 KRT76Q01546 638 aa8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 GLYCTKQ8IVS8 523 aa8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 TUT1Q9H6E5 874 aaKnown RBP8.38□□□□□ -1.07
SMCHD1-204ENST00000581226 NPR3P17342 541 aa8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 EIF1AXP47813 144 aaKnown RBP8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 KCNQ4P56696 695 aa8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 AAMPQ13685 434 aa8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 RGL4Q8IZJ4 473 aa8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 FAM13BQ9NYF5 915 aa8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 NSFL1CQ9UNZ2 370 aaKnown RBP8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 USP20Q9Y2K6 914 aa8.37□□□□□ -1.07
SMCHD1-204ENST00000581226 C2CD2LO14523 706 aa8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 GRIN2CQ14957 1233 aa8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 FAM182BQ5T319 152 aa8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 ALKBH2Q6NS38 261 aa8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 ATCAYQ86WG3 371 aa8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 CMTR1Q8N1G2 835 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 RTCBQ9Y3I0 505 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-204ENST00000581226 IGF1RP08069 1367 aa8.35□□□□□ -1.07
SMCHD1-204ENST00000581226 SOWAHDA6NJG2 315 aa8.35□□□□□ -1.07
SMCHD1-204ENST00000581226 LORP23490 312 aaPredicted RBP8.35□□□□□ -1.07
SMCHD1-204ENST00000581226 GPR152Q8TDT2 470 aa8.35□□□□□ -1.07
SMCHD1-204ENST00000581226 PIK3R5Q8WYR1 880 aa8.35□□□□□ -1.07
SMCHD1-204ENST00000581226 PRR12Q9ULL5 1215 aa8.35□□□□□ -1.07
SMCHD1-204ENST00000581226 GRNP28799 593 aaKnown RBP8.34□□□□□ -1.07
SMCHD1-204ENST00000581226 MAP2K3P46734 347 aa8.34□□□□□ -1.07
SMCHD1-204ENST00000581226 SRSF11Q05519 484 aaKnown RBP8.34□□□□□ -1.07
SMCHD1-204ENST00000581226 SPEM2Q0P670 501 aa8.34□□□□□ -1.07
SMCHD1-204ENST00000581226 BIN2Q9UBW5 565 aaPredicted RBP8.34□□□□□ -1.07
SMCHD1-204ENST00000581226 DNM1Q05193 864 aaKnown RBP8.33□□□□□ -1.08
SMCHD1-204ENST00000581226 EDEM1Q92611 657 aa8.33□□□□□ -1.08
SMCHD1-204ENST00000581226 SLC30A3Q99726 388 aa8.33□□□□□ -1.08
SMCHD1-204ENST00000581226 ADAMTS2O95450 1211 aa8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 CCINQ13939 588 aa8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 ECM1Q16610 540 aa8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 RAB44Q7Z6P3 723 aaPredicted RBP8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 NUDT16Q96DE0 195 aaKnown RBP8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 PNMA5Q96PV4 448 aa8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 GSX2Q9BZM3 304 aa8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 KCNMB2Q9Y691 235 aa8.32□□□□□ -1.08
SMCHD1-204ENST00000581226 XYLBO75191 536 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 PCSK2P16519 638 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 MZF1P28698 734 aaPredicted RBP8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 ARHGAP4P98171 946 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 NEUROD1Q13562 356 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 BHMTQ93088 406 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 C11orf16Q9NQ32 467 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 POLIQ9UNA4 740 aa8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 FNDC3AQ9Y2H6 1198 aaKnown RBP8.31□□□□□ -1.08
SMCHD1-204ENST00000581226 UBAP1LF5GYI3 381 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 PDGFAP04085 211 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 SLURP2P0DP57 97 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 KRT25Q7Z3Z0 450 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 SYT9Q86SS6 491 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 TTC16Q8NEE8 873 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 CCDC87Q9NVE4 849 aa8.3□□□□□ -1.08
SMCHD1-204ENST00000581226 FZD6O60353 706 aa8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 SASH3O75995 380 aa8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 ARAFP10398 606 aa8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 PCBP4P57723 403 aaKnown RBP8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 TRIP4Q15650 581 aaPredicted RBP8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 ZNF468Q5VIY5 522 aaPredicted RBP8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 OXCT2Q9BYC2 517 aaPredicted RBP8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 EFCC1Q9HA90 598 aa8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 BRPF3Q9ULD4 1205 aa8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.29□□□□□ -1.08
SMCHD1-204ENST00000581226 ZBTB7CA1YPR0 619 aa8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 EGFRP00533 1210 aa8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 RPLP1P05386 114 aaKnown RBP8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 NFKB1P19838 968 aa8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 TARSP26639 723 aaKnown RBP8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 C8orf34Q49A92 452 aa8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 ACDQ96AP0 544 aa8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 AVENQ9NQS1 362 aaPredicted RBP8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 GGA1Q9UJY5 639 aa8.28□□□□□ -1.08
SMCHD1-204ENST00000581226 NEURL1BA8MQ27 555 aa8.27□□□□□ -1.09
SMCHD1-204ENST00000581226 NDUFB5O43674 189 aa8.27□□□□□ -1.09
SMCHD1-204ENST00000581226 ADH6P28332 368 aa8.27□□□□□ -1.09
SMCHD1-204ENST00000581226 USP5P45974 858 aa8.27□□□□□ -1.09
SMCHD1-204ENST00000581226 GZF1Q9H116 711 aaPredicted RBP8.27□□□□□ -1.09
SMCHD1-204ENST00000581226 KLF15Q9UIH9 416 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms