RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PTF1AQ7RTS3 328 aa13.06□□□□□ -0.32
SS18-217ENST00000580958 JARID2Q92833 1246 aaPredicted RBP13.06□□□□□ -0.32
SS18-217ENST00000580958 KAZALD1Q96I82 304 aa13.06□□□□□ -0.32
SS18-217ENST00000580958 BCL11AQ9H165 835 aa13.06□□□□□ -0.32
SS18-217ENST00000580958 BCORQ6W2J9 1755 aa13.06□□□□□ -0.32
SS18-217ENST00000580958 AK9Q5TCS8 1911 aa13.05□□□□□ -0.32
SS18-217ENST00000580958 MTX1Q13505 466 aa13.05□□□□□ -0.32
SS18-217ENST00000580958 ARXQ96QS3 562 aa13.05□□□□□ -0.32
SS18-217ENST00000580958 BICC1Q9H694 974 aaKnown RBP13.05□□□□□ -0.32
SS18-217ENST00000580958 CCDC87Q9NVE4 849 aa13.05□□□□□ -0.32
SS18-217ENST00000580958 CWC25Q9NXE8 425 aaPredicted RBP13.05□□□□□ -0.32
SS18-217ENST00000580958 MAP3K15Q6ZN16 1313 aa13.05□□□□□ -0.32
SS18-217ENST00000580958 A0A087WZG4 1122 aa13.04□□□□□ -0.32
SS18-217ENST00000580958 IL6STP40189 918 aaPredicted RBP13.04□□□□□ -0.32
SS18-217ENST00000580958 CRKLP46109 303 aaKnown RBP13.04□□□□□ -0.32
SS18-217ENST00000580958 EPHA10Q5JZY3 1008 aa13.04□□□□□ -0.32
SS18-217ENST00000580958 INTS5Q6P9B9 1019 aaKnown RBP13.04□□□□□ -0.32
SS18-217ENST00000580958 C16orf71Q8IYS4 520 aaPredicted RBP13.04□□□□□ -0.32
SS18-217ENST00000580958 ISCA1Q9BUE6 129 aa13.04□□□□□ -0.32
SS18-217ENST00000580958 SURF6O75683 361 aaKnown RBP13.03□□□□□ -0.32
SS18-217ENST00000580958 CASP7P55210 303 aa13.03□□□□□ -0.32
SS18-217ENST00000580958 TCIRG1Q13488 830 aa13.03□□□□□ -0.32
SS18-217ENST00000580958 UBE3BQ7Z3V4 1068 aa13.03□□□□□ -0.32
SS18-217ENST00000580958 PLEKHM2Q8IWE5 1019 aa13.03□□□□□ -0.32
SS18-217ENST00000580958 CCDC191Q8NCU4 936 aa13.03□□□□□ -0.32
SS18-217ENST00000580958 OTUD7AQ8TE49 926 aaPredicted RBP13.03□□□□□ -0.32
SS18-217ENST00000580958 COL15A1P39059 1388 aa13.03□□□□□ -0.32
SS18-217ENST00000580958 H7C1W4 665 aa13.02□□□□□ -0.33
SS18-217ENST00000580958 RAB11FIP3O75154 756 aa13.02□□□□□ -0.33
SS18-217ENST00000580958 EIF5P55010 431 aaKnown RBP13.02□□□□□ -0.33
SS18-217ENST00000580958 HLFQ16534 295 aa13.02□□□□□ -0.33
SS18-217ENST00000580958 LRRCC1Q9C099 1032 aa13.02□□□□□ -0.33
SS18-217ENST00000580958 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.33
SS18-217ENST00000580958 HSP90AB3PQ58FF7 597 aa13.01□□□□□ -0.33
SS18-217ENST00000580958 GIGYF2Q6Y7W6 1299 aaKnown RBP13.01□□□□□ -0.33
SS18-217ENST00000580958 NPM2Q86SE8 214 aaKnown RBP13.01□□□□□ -0.33
SS18-217ENST00000580958 DZIP3Q86Y13 1208 aaKnown RBP13.01□□□□□ -0.33
SS18-217ENST00000580958 LINC00116Q8NCU8 138 aa13.01□□□□□ -0.33
SS18-217ENST00000580958 TBC1D2BQ9UPU7 963 aa13.01□□□□□ -0.33
SS18-217ENST00000580958 PA2G4Q9UQ80 394 aaKnown RBP13.01□□□□□ -0.33
SS18-217ENST00000580958 NOP58Q9Y2X3 529 aaKnown RBP13.01□□□□□ -0.33
SS18-217ENST00000580958 CASZ1Q86V15 1759 aa13□□□□□ -0.33
SS18-217ENST00000580958 SCN7AQ01118 1682 aa13□□□□□ -0.33
SS18-217ENST00000580958 KCNQ4P56696 695 aa13□□□□□ -0.33
SS18-217ENST00000580958 TRIM28Q13263 835 aaKnown RBP13□□□□□ -0.33
SS18-217ENST00000580958 OS9Q13438 667 aaPredicted RBP13□□□□□ -0.33
SS18-217ENST00000580958 ERVV-1B6SEH8 477 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 GPTP24298 496 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 RABL6Q3YEC7 729 aaPredicted RBP12.99□□□□□ -0.33
SS18-217ENST00000580958 HSP90AB4PQ58FF6 505 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 BMP2KLQ5H9B9 411 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 RTL5Q5HYW3 569 aaPredicted RBP12.99□□□□□ -0.33
SS18-217ENST00000580958 TTC22Q5TAA0 569 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 ZNF772Q68DY9 489 aaPredicted RBP12.99□□□□□ -0.33
SS18-217ENST00000580958 RHPN1Q8TCX5 695 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 LAMB2P55268 1798 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 C4BP0C0L5 1744 aa12.99□□□□□ -0.33
SS18-217ENST00000580958 SALL3Q9BXA9 1300 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 CNTNAP4Q9C0A0 1308 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 RBM6P78332 1123 aaKnown RBP12.98□□□□□ -0.33
SS18-217ENST00000580958 FOXO4P98177 505 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 KRT27Q7Z3Y8 459 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 KIF1BPQ96EK5 621 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 IL1RAPL2Q9NP60 686 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 C4AP0C0L4 1744 aa12.98□□□□□ -0.33
SS18-217ENST00000580958 DDX60Q8IY21 1712 aaKnown RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 SEC24BO95487 1268 aa12.97□□□□□ -0.33
SS18-217ENST00000580958 PCCAP05165 728 aaPredicted RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 GSPT1P15170 499 aaKnown RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 RFX5P48382 616 aaPredicted RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 G3BP1Q13283 466 aaKnown RBP eCLIP12.97□□□□□ -0.33
SS18-217ENST00000580958 LMBR1LQ6UX01 489 aa12.97□□□□□ -0.33
SS18-217ENST00000580958 NLRP10Q86W26 655 aa12.97□□□□□ -0.33
SS18-217ENST00000580958 ERC1Q8IUD2 1116 aa12.97□□□□□ -0.33
SS18-217ENST00000580958 KLHDC4Q8TBB5 520 aa12.97□□□□□ -0.33
SS18-217ENST00000580958 BCL11BQ9C0K0 894 aaPredicted RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 CCNL1Q9UK58 526 aaPredicted RBP12.97□□□□□ -0.33
SS18-217ENST00000580958 UBR3Q6ZT12 1888 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 CAMTA2O94983 1202 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 PDE1AP54750 535 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 FAM196AQ6ZSG2 479 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 NUTM1Q86Y26 1132 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 ZNF34Q8IZ26 560 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 SIL1Q9H173 461 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 OSBPL3Q9H4L5 887 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 COPRSQ9NQ92 184 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 CHMP3Q9Y3E7 222 aa12.96□□□□□ -0.33
SS18-217ENST00000580958 SPEF2Q9C093 1822 aa12.95□□□□□ -0.34
SS18-217ENST00000580958 CDHR2Q9BYE9 1310 aa12.95□□□□□ -0.34
SS18-217ENST00000580958 MX1P20591 662 aa12.95□□□□□ -0.34
SS18-217ENST00000580958 RC3H1Q5TC82 1133 aaKnown RBP12.95□□□□□ -0.34
SS18-217ENST00000580958 TSHZ3Q63HK5 1081 aa12.95□□□□□ -0.34
SS18-217ENST00000580958 ZBTB38Q8NAP3 1195 aaPredicted RBP12.95□□□□□ -0.34
SS18-217ENST00000580958 FAM89AQ96GI7 184 aa12.95□□□□□ -0.34
SS18-217ENST00000580958 UBN2Q6ZU65 1347 aa12.94□□□□□ -0.34
SS18-217ENST00000580958 SASH1O94885 1247 aa12.94□□□□□ -0.34
SS18-217ENST00000580958 ANP32AP39687 249 aaKnown RBP12.94□□□□□ -0.34
SS18-217ENST00000580958 PTPN12Q05209 780 aaKnown RBP12.94□□□□□ -0.34
SS18-217ENST00000580958 SYNE4Q8N205 404 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms