RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RPAP2Q8IXW5 612 aaPredicted RBP31.43■■■□□ 2.62
SHMT1-207ENST00000580002 UBR3Q6ZT12 1888 aa31.43■■■□□ 2.62
SHMT1-207ENST00000580002 RFC4P35249 363 aa31.43■■■□□ 2.62
SHMT1-207ENST00000580002 ATP8B2P98198 1209 aa31.43■■■□□ 2.62
SHMT1-207ENST00000580002 SF3B2Q13435 895 aaKnown RBP31.43■■■□□ 2.62
SHMT1-207ENST00000580002 SUSD4Q5VX71 490 aa31.43■■■□□ 2.62
SHMT1-207ENST00000580002 BICDL1Q6ZP65 573 aa31.43■■■□□ 2.62
SHMT1-207ENST00000580002 CENPQQ7L2Z9 268 aaPredicted RBP31.43■■■□□ 2.62
SHMT1-207ENST00000580002 BICC1Q9H694 974 aaKnown RBP31.43■■■□□ 2.62
SHMT1-207ENST00000580002 ANO8Q9HCE9 1232 aaPredicted RBP31.43■■■□□ 2.62
SHMT1-207ENST00000580002 NIP7Q9Y221 180 aaKnown RBP eCLIP31.43■■■□□ 2.62
SHMT1-207ENST00000580002 ZPR1O75312 459 aa31.42■■■□□ 2.62
SHMT1-207ENST00000580002 TBC1D9BQ66K14 1250 aa31.42■■■□□ 2.62
SHMT1-207ENST00000580002 IBTKQ9P2D0 1353 aaPredicted RBP31.41■■■□□ 2.62
SHMT1-207ENST00000580002 TFCP2L1Q9NZI6 479 aa31.41■■■□□ 2.62
SHMT1-207ENST00000580002 PPP1R42Q7Z4L9 355 aa31.4■■■□□ 2.62
SHMT1-207ENST00000580002 USP42Q9H9J4 1324 aaKnown RBP31.4■■■□□ 2.62
SHMT1-207ENST00000580002 BAG6P46379 1132 aa31.4■■■□□ 2.62
SHMT1-207ENST00000580002 BCORQ6W2J9 1755 aa31.4■■■□□ 2.62
SHMT1-207ENST00000580002 CLEC4GQ6UXB4 293 aa31.39■■■□□ 2.62
SHMT1-207ENST00000580002 C4AP0C0L4 1744 aa31.38■■■□□ 2.61
SHMT1-207ENST00000580002 SSFA2P28290 1259 aa31.38■■■□□ 2.61
SHMT1-207ENST00000580002 ANKRD36CQ5JPF3 1778 aa31.38■■■□□ 2.61
SHMT1-207ENST00000580002 PCCAP05165 728 aaPredicted RBP31.37■■■□□ 2.61
SHMT1-207ENST00000580002 COL23A1Q86Y22 540 aaPredicted RBP31.37■■■□□ 2.61
SHMT1-207ENST00000580002 ZBTB38Q8NAP3 1195 aaPredicted RBP31.37■■■□□ 2.61
SHMT1-207ENST00000580002 TRMT112Q9UI30 125 aaKnown RBP31.37■■■□□ 2.61
SHMT1-207ENST00000580002 ZNF652Q9Y2D9 606 aa31.37■■■□□ 2.61
SHMT1-207ENST00000580002 ADRA2BP18089 450 aa31.36■■■□□ 2.61
SHMT1-207ENST00000580002 FOXO4P98177 505 aa31.36■■■□□ 2.61
SHMT1-207ENST00000580002 RGPD3A6NKT7 1758 aaPredicted RBP31.36■■■□□ 2.61
SHMT1-207ENST00000580002 RGPD4Q7Z3J3 1758 aa31.36■■■□□ 2.61
SHMT1-207ENST00000580002 SRGAP3O43295 1099 aa31.35■■■□□ 2.61
SHMT1-207ENST00000580002 SCN7AQ01118 1682 aa31.35■■■□□ 2.61
SHMT1-207ENST00000580002 GYS1P13807 737 aa31.34■■■□□ 2.61
SHMT1-207ENST00000580002 SMC5Q8IY18 1101 aa31.34■■■□□ 2.61
SHMT1-207ENST00000580002 POLA2Q14181 598 aa31.33■■■□□ 2.61
SHMT1-207ENST00000580002 NUTM1Q86Y26 1132 aa31.33■■■□□ 2.61
SHMT1-207ENST00000580002 SSH3Q8TE77 659 aa31.33■■■□□ 2.61
SHMT1-207ENST00000580002 DCTPP1Q9H773 170 aa31.33■■■□□ 2.61
SHMT1-207ENST00000580002 PNPLA7Q6ZV29 1317 aa31.32■■■□□ 2.6
SHMT1-207ENST00000580002 NTSR2O95665 410 aa31.32■■■□□ 2.6
SHMT1-207ENST00000580002 UTP14AQ9BVJ6 771 aaKnown RBP31.32■■■□□ 2.6
SHMT1-207ENST00000580002 PDZRN3Q9UPQ7 1066 aa31.32■■■□□ 2.6
SHMT1-207ENST00000580002 MTX1Q13505 466 aa31.31■■■□□ 2.6
SHMT1-207ENST00000580002 LMBR1LQ6UX01 489 aa31.31■■■□□ 2.6
SHMT1-207ENST00000580002 TUBGCP6Q96RT7 1819 aa31.31■■■□□ 2.6
SHMT1-207ENST00000580002 MSH5O43196 834 aa31.3■■■□□ 2.6
SHMT1-207ENST00000580002 PARP10Q53GL7 1025 aa31.3■■■□□ 2.6
SHMT1-207ENST00000580002 PA2G4Q9UQ80 394 aaKnown RBP31.3■■■□□ 2.6
SHMT1-207ENST00000580002 EXOC6BQ9Y2D4 811 aa31.3■■■□□ 2.6
SHMT1-207ENST00000580002 APBB1O00213 710 aa31.3■■■□□ 2.6
SHMT1-207ENST00000580002 HCLS1P14317 486 aaPredicted RBP31.3■■■□□ 2.6
SHMT1-207ENST00000580002 SLC15A2Q16348 729 aa31.3■■■□□ 2.6
SHMT1-207ENST00000580002 RABL6Q3YEC7 729 aaPredicted RBP31.3■■■□□ 2.6
SHMT1-207ENST00000580002 CCDC85AQ96PX6 553 aaPredicted RBP31.3■■■□□ 2.6
SHMT1-207ENST00000580002 IRS4O14654 1257 aaPredicted RBP31.29■■■□□ 2.6
SHMT1-207ENST00000580002 NFIXQ14938 502 aa31.29■■■□□ 2.6
SHMT1-207ENST00000580002 CCDC24Q8N4L8 307 aa31.29■■■□□ 2.6
SHMT1-207ENST00000580002 KLHDC4Q8TBB5 520 aa31.29■■■□□ 2.6
SHMT1-207ENST00000580002 HMMRO75330 724 aa31.28■■■□□ 2.6
SHMT1-207ENST00000580002 SETDB2Q96T68 719 aa31.28■■■□□ 2.6
SHMT1-207ENST00000580002 HDAC5Q9UQL6 1122 aa31.28■■■□□ 2.6
SHMT1-207ENST00000580002 RGL2O15211 777 aa31.27■■■□□ 2.6
SHMT1-207ENST00000580002 UPF1Q92900 1129 aaKnown RBP eCLIP31.27■■■□□ 2.62e-6■□□□□ 8.5
SHMT1-207ENST00000580002 BCL11AQ9H165 835 aa31.27■■■□□ 2.6
SHMT1-207ENST00000580002 CDHR2Q9BYE9 1310 aa31.26■■■□□ 2.6
SHMT1-207ENST00000580002 ERFEQ4G0M1 354 aa31.26■■■□□ 2.59
SHMT1-207ENST00000580002 CCDC125Q86Z20 511 aa31.26■■■□□ 2.59
SHMT1-207ENST00000580002 ANKRD45Q5TZF3 282 aa31.25■■■□□ 2.59
SHMT1-207ENST00000580002 PDGFDQ9GZP0 370 aaPredicted RBP31.25■■■□□ 2.59
SHMT1-207ENST00000580002 STK32BQ9NY57 414 aa31.25■■■□□ 2.59
SHMT1-207ENST00000580002 CHMP3Q9Y3E7 222 aa31.25■■■□□ 2.59
SHMT1-207ENST00000580002 SH3TC1Q8TE82 1336 aa31.25■■■□□ 2.59
SHMT1-207ENST00000580002 HMGB2P26583 209 aaKnown RBP31.25■■■□□ 2.59
SHMT1-207ENST00000580002 RFX5P48382 616 aaPredicted RBP31.25■■■□□ 2.59
SHMT1-207ENST00000580002 GCC1Q96CN9 775 aa31.25■■■□□ 2.59
SHMT1-207ENST00000580002 PLA2G12BQ9BX93 195 aa31.25■■■□□ 2.59
SHMT1-207ENST00000580002 SMARCA5O60264 1052 aaPredicted RBP31.24■■■□□ 2.59
SHMT1-207ENST00000580002 SURF6O75683 361 aaKnown RBP31.23■■■□□ 2.59
SHMT1-207ENST00000580002 TM4SF1P30408 202 aa31.22■■■□□ 2.59
SHMT1-207ENST00000580002 NUCB1Q02818 461 aa31.22■■■□□ 2.59
SHMT1-207ENST00000580002 C3orf67Q6ZVT6 689 aa31.22■■■□□ 2.59
SHMT1-207ENST00000580002 LNPKQ9C0E8 428 aa31.22■■■□□ 2.59
SHMT1-207ENST00000580002 CSF1RP07333 972 aa31.21■■■□□ 2.59
SHMT1-207ENST00000580002 PDE4AP27815 886 aa31.21■■■□□ 2.59
SHMT1-207ENST00000580002 MSL1Q68DK7 614 aa31.21■■■□□ 2.59
SHMT1-207ENST00000580002 NBPF5PQ86XG9 351 aaPredicted RBP31.21■■■□□ 2.59
SHMT1-207ENST00000580002 TTLL11Q8NHH1 800 aa31.21■■■□□ 2.59
SHMT1-207ENST00000580002 ZNF594Q96JF6 807 aaPredicted RBP31.2■■■□□ 2.59
SHMT1-207ENST00000580002 ABCC12Q96J65 1359 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 PDE8AO60658 829 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 RGS3P49796 1198 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 DDR1Q08345 913 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 FAM161AQ3B820 660 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 ILDR2Q71H61 639 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 SIL1Q9H173 461 aa31.2■■■□□ 2.58
SHMT1-207ENST00000580002 CTSWP56202 376 aa31.19■■■□□ 2.58
SHMT1-207ENST00000580002 PTPN12Q05209 780 aaKnown RBP31.19■■■□□ 2.58
SHMT1-207ENST00000580002 FLAD1Q8NFF5 587 aa31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms