RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TCIRG1Q13488 830 aa25.04■■□□□ 1.6
SS18-209ENST00000578595 SBF1O95248 1867 aa25.04■■□□□ 1.6
SS18-209ENST00000578595 NTSR2O95665 410 aa25.03■■□□□ 1.6
SS18-209ENST00000578595 MASTLQ96GX5 879 aa25.03■■□□□ 1.6
SS18-209ENST00000578595 ATP5J2-PTCD1G3V325 749 aa25.02■■□□□ 1.6
SS18-209ENST00000578595 SRGNP10124 158 aa25.02■■□□□ 1.6
SS18-209ENST00000578595 CNKSR1Q969H4 720 aa25.02■■□□□ 1.6
SS18-209ENST00000578595 TRMT112Q9UI30 125 aaKnown RBP25.02■■□□□ 1.6
SS18-209ENST00000578595 STYK1Q6J9G0 422 aa25.01■■□□□ 1.59
SS18-209ENST00000578595 NLRP10Q86W26 655 aa25.01■■□□□ 1.59
SS18-209ENST00000578595 NPR1P16066 1061 aa25■■□□□ 1.59
SS18-209ENST00000578595 RPGRQ92834 1020 aaKnown RBP25■■□□□ 1.59
SS18-209ENST00000578595 ZNF521Q96K83 1311 aa25■■□□□ 1.59
SS18-209ENST00000578595 SLC4A2P04920 1241 aa24.99■■□□□ 1.59
SS18-209ENST00000578595 FER1L6Q2WGJ9 1857 aa24.99■■□□□ 1.59
SS18-209ENST00000578595 DDX60Q8IY21 1712 aaKnown RBP24.99■■□□□ 1.59
SS18-209ENST00000578595 MYD88Q99836 296 aa24.99■■□□□ 1.59
SS18-209ENST00000578595 C21orf2O43822 256 aa24.98■■□□□ 1.59
SS18-209ENST00000578595 PRPF40BQ6NWY9 871 aaKnown RBP24.98■■□□□ 1.59
SS18-209ENST00000578595 RIC1Q4ADV7 1423 aa24.97■■□□□ 1.59
SS18-209ENST00000578595 RNF123Q5XPI4 1314 aa24.97■■□□□ 1.59
SS18-209ENST00000578595 SH3TC1Q8TE82 1336 aa24.97■■□□□ 1.59
SS18-209ENST00000578595 RASSF7Q02833 373 aa24.97■■□□□ 1.59
SS18-209ENST00000578595 E9PSI1 815 aa24.96■■□□□ 1.59
SS18-209ENST00000578595 VAMP4O75379 141 aa24.96■■□□□ 1.59
SS18-209ENST00000578595 RTL5Q5HYW3 569 aaPredicted RBP24.96■■□□□ 1.59
SS18-209ENST00000578595 MAP3K2Q9Y2U5 619 aa24.96■■□□□ 1.59
SS18-209ENST00000578595 TIAM2Q8IVF5 1701 aa24.95■■□□□ 1.59
SS18-209ENST00000578595 G2E3Q7L622 706 aa24.95■■□□□ 1.58
SS18-209ENST00000578595 ZNF784Q8NCA9 323 aaPredicted RBP24.95■■□□□ 1.58
SS18-209ENST00000578595 NLRP3Q96P20 1036 aa24.95■■□□□ 1.58
SS18-209ENST00000578595 ISCA1Q9BUE6 129 aa24.95■■□□□ 1.58
SS18-209ENST00000578595 TAF1P21675 1872 aa24.95■■□□□ 1.58
SS18-209ENST00000578595 HCLS1P14317 486 aaPredicted RBP24.94■■□□□ 1.58
SS18-209ENST00000578595 FKBP5Q13451 457 aaPredicted RBP24.94■■□□□ 1.58
SS18-209ENST00000578595 ZNF526Q8TF50 670 aaPredicted RBP24.94■■□□□ 1.58
SS18-209ENST00000578595 MYH3P11055 1940 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 KLRG2A4D1S0 409 aaPredicted RBP24.93■■□□□ 1.58
SS18-209ENST00000578595 PI4KAP2A4QPH2 592 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 ALDH1B1P30837 517 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 NEXNQ0ZGT2 675 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 FLIIQ13045 1269 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 KSR2Q6VAB6 950 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 SYNE4Q8N205 404 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 PI4KAP1Q8N8J0 262 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 RNF181Q9P0P0 153 aa24.93■■□□□ 1.58
SS18-209ENST00000578595 DICER1Q9UPY3 1922 aaKnown RBP24.92■■□□□ 1.58
SS18-209ENST00000578595 C9orf131Q5VYM1 1079 aa24.92■■□□□ 1.58
SS18-209ENST00000578595 FAM89AQ96GI7 184 aa24.92■■□□□ 1.58
SS18-209ENST00000578595 RBM17Q96I25 401 aaKnown RBP24.92■■□□□ 1.58
SS18-209ENST00000578595 METTL22Q9BUU2 404 aaPredicted RBP24.92■■□□□ 1.58
SS18-209ENST00000578595 CRY2Q49AN0 593 aa24.91■■□□□ 1.58
SS18-209ENST00000578595 SOGA3Q5TF21 947 aa24.91■■□□□ 1.58
SS18-209ENST00000578595 C3orf67Q6ZVT6 689 aa24.91■■□□□ 1.58
SS18-209ENST00000578595 CDCA7LQ96GN5 454 aa24.91■■□□□ 1.58
SS18-209ENST00000578595 ADCY9O60503 1353 aa24.91■■□□□ 1.58
SS18-209ENST00000578595 SLFN5Q08AF3 891 aa24.9■■□□□ 1.58
SS18-209ENST00000578595 CWC25Q9NXE8 425 aaPredicted RBP24.9■■□□□ 1.58
SS18-209ENST00000578595 HNRNPUQ00839 825 aaKnown RBP eCLIP24.89■■□□□ 1.58
SS18-209ENST00000578595 CCDC93Q567U6 631 aa24.89■■□□□ 1.58
SS18-209ENST00000578595 SLC10A5Q5PT55 438 aa24.88■■□□□ 1.57
SS18-209ENST00000578595 CCDC191Q8NCU4 936 aa24.88■■□□□ 1.57
SS18-209ENST00000578595 TAOK3Q9H2K8 898 aa24.88■■□□□ 1.57
SS18-209ENST00000578595 NFKBIEO00221 500 aa24.86■■□□□ 1.57
SS18-209ENST00000578595 IRS4O14654 1257 aaPredicted RBP24.86■■□□□ 1.57
SS18-209ENST00000578595 PPEF1O14829 653 aaPredicted RBP24.86■■□□□ 1.57
SS18-209ENST00000578595 LMNB1P20700 586 aa24.86■■□□□ 1.57
SS18-209ENST00000578595 TRIM28Q13263 835 aaKnown RBP24.86■■□□□ 1.57
SS18-209ENST00000578595 OLFM4Q6UX06 510 aa24.86■■□□□ 1.57
SS18-209ENST00000578595 JARID2Q92833 1246 aaPredicted RBP24.86■■□□□ 1.57
SS18-209ENST00000578595 TMX4Q9H1E5 349 aaPredicted RBP24.86■■□□□ 1.57
SS18-209ENST00000578595 CWF19L2Q2TBE0 894 aaKnown RBP24.85■■□□□ 1.57
SS18-209ENST00000578595 DDX46Q7L014 1031 aaKnown RBP24.85■■□□□ 1.57
SS18-209ENST00000578595 ZBTB38Q8NAP3 1195 aaPredicted RBP24.85■■□□□ 1.57
SS18-209ENST00000578595 DNAAF4Q8WXU2 420 aa24.85■■□□□ 1.57
SS18-209ENST00000578595 GPBP1L1Q9HC44 474 aaPredicted RBP24.85■■□□□ 1.57
SS18-209ENST00000578595 ABCC4O15439 1325 aa24.85■■□□□ 1.57
SS18-209ENST00000578595 SPEF2Q9C093 1822 aa24.84■■□□□ 1.57
SS18-209ENST00000578595 HOXA10P31260 410 aaPredicted RBP24.84■■□□□ 1.57
SS18-209ENST00000578595 CRAMP1Q96RY5 1269 aa24.84■■□□□ 1.57
SS18-209ENST00000578595 PCCAP05165 728 aaPredicted RBP24.82■■□□□ 1.56
SS18-209ENST00000578595 IGKV5-2P06315 115 aa24.82■■□□□ 1.56
SS18-209ENST00000578595 HSP90B1P14625 803 aaKnown RBP24.82■■□□□ 1.56
SS18-209ENST00000578595 BCL2L13Q9BXK5 485 aa24.82■■□□□ 1.56
SS18-209ENST00000578595 F6X3S4 739 aa24.81■■□□□ 1.56
SS18-209ENST00000578595 C7orf43Q8WVR3 580 aa24.81■■□□□ 1.56
SS18-209ENST00000578595 NEURL1BA8MQ27 555 aa24.8■■□□□ 1.56
SS18-209ENST00000578595 SLC4A10Q6U841 1118 aa24.8■■□□□ 1.56
SS18-209ENST00000578595 RTKN2Q8IZC4 609 aa24.8■■□□□ 1.56
SS18-209ENST00000578595 FKBP4Q02790 459 aaKnown RBP eCLIP24.79■■□□□ 1.56
SS18-209ENST00000578595 CCDC85AQ96PX6 553 aaPredicted RBP24.79■■□□□ 1.56
SS18-209ENST00000578595 LTBP3Q9NS15 1303 aa24.79■■□□□ 1.56
SS18-209ENST00000578595 PRELPP51888 382 aa24.78■■□□□ 1.56
SS18-209ENST00000578595 CC2D2BQ6DHV5 1058 aa24.78■■□□□ 1.56
SS18-209ENST00000578595 UBE3BQ7Z3V4 1068 aa24.78■■□□□ 1.56
SS18-209ENST00000578595 LINS1Q8NG48 757 aa24.78■■□□□ 1.56
SS18-209ENST00000578595 SMC4Q9NTJ3 1288 aa24.78■■□□□ 1.56
SS18-209ENST00000578595 PDE8AO60658 829 aa24.77■■□□□ 1.56
SS18-209ENST00000578595 GRAPQ13588 217 aa24.77■■□□□ 1.56
SS18-209ENST00000578595 GRAPLQ8TC17 118 aaPredicted RBP24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms