RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 ARHGAP27Q6ZUM4 889 aa17.44■□□□□ 0.38
CIITA-210ENST00000575513 NUTM1Q86Y26 1132 aa17.44■□□□□ 0.38
CIITA-210ENST00000575513 ALDH1B1P30837 517 aa17.43■□□□□ 0.38
CIITA-210ENST00000575513 CHD4Q14839 1912 aa17.43■□□□□ 0.38
CIITA-210ENST00000575513 HOXA10P31260 410 aaPredicted RBP17.42■□□□□ 0.38
CIITA-210ENST00000575513 SLFN5Q08AF3 891 aa17.42■□□□□ 0.38
CIITA-210ENST00000575513 KSR2Q6VAB6 950 aa17.42■□□□□ 0.38
CIITA-210ENST00000575513 TRMT112Q9UI30 125 aaKnown RBP17.42■□□□□ 0.38
CIITA-210ENST00000575513 ANKRD31Q8N7Z5 1873 aa17.41■□□□□ 0.38
CIITA-210ENST00000575513 SOGA3Q5TF21 947 aa17.41■□□□□ 0.38
CIITA-210ENST00000575513 NLRP3Q96P20 1036 aa17.41■□□□□ 0.38
CIITA-210ENST00000575513 METTL22Q9BUU2 404 aaPredicted RBP17.41■□□□□ 0.38
CIITA-210ENST00000575513 SH3TC1Q8TE82 1336 aa17.41■□□□□ 0.38
CIITA-210ENST00000575513 ABCC12Q96J65 1359 aa17.4■□□□□ 0.38
CIITA-210ENST00000575513 TRMT2AQ8IZ69 625 aaKnown RBP17.4■□□□□ 0.38
CIITA-210ENST00000575513 CCDC191Q8NCU4 936 aa17.4■□□□□ 0.38
CIITA-210ENST00000575513 DLEC1Q9Y238 1755 aa17.4■□□□□ 0.38
CIITA-210ENST00000575513 ARFGEF1Q9Y6D6 1849 aa17.4■□□□□ 0.38
CIITA-210ENST00000575513 PI4KAP2A4QPH2 592 aa17.39■□□□□ 0.37
CIITA-210ENST00000575513 PRPF40BQ6NWY9 871 aaKnown RBP17.39■□□□□ 0.37
CIITA-210ENST00000575513 PI4KAP1Q8N8J0 262 aa17.39■□□□□ 0.37
CIITA-210ENST00000575513 C7orf43Q8WVR3 580 aa17.39■□□□□ 0.37
CIITA-210ENST00000575513 ZNF428Q96B54 188 aa17.39■□□□□ 0.37
CIITA-210ENST00000575513 ATP5J2-PTCD1G3V325 749 aa17.38■□□□□ 0.37
CIITA-210ENST00000575513 HSP90B1P14625 803 aaKnown RBP17.38■□□□□ 0.37
CIITA-210ENST00000575513 FLIIQ13045 1269 aa17.38■□□□□ 0.37
CIITA-210ENST00000575513 ZNF784Q8NCA9 323 aaPredicted RBP17.38■□□□□ 0.37
CIITA-210ENST00000575513 RPGRQ92834 1020 aaKnown RBP17.38■□□□□ 0.37
CIITA-210ENST00000575513 RBM17Q96I25 401 aaKnown RBP17.38■□□□□ 0.37
CIITA-210ENST00000575513 CRAMP1Q96RY5 1269 aa17.38■□□□□ 0.37
CIITA-210ENST00000575513 MAP3K2Q9Y2U5 619 aa17.38■□□□□ 0.37
CIITA-210ENST00000575513 TCERG1O14776 1098 aaKnown RBP17.37■□□□□ 0.37
CIITA-210ENST00000575513 C21orf2O43822 256 aa17.37■□□□□ 0.37
CIITA-210ENST00000575513 G2E3Q7L622 706 aa17.37■□□□□ 0.37
CIITA-210ENST00000575513 ZBTB38Q8NAP3 1195 aaPredicted RBP17.37■□□□□ 0.37
CIITA-210ENST00000575513 MYD88Q99836 296 aa17.37■□□□□ 0.37
CIITA-210ENST00000575513 CT47B1P0C2W7 299 aaPredicted RBP17.36■□□□□ 0.37
CIITA-210ENST00000575513 NEXNQ0ZGT2 675 aa17.36■□□□□ 0.37
CIITA-210ENST00000575513 GRIPAP1Q4V328 841 aa17.36■□□□□ 0.37
CIITA-210ENST00000575513 CC2D2BQ6DHV5 1058 aa17.36■□□□□ 0.37
CIITA-210ENST00000575513 CWC25Q9NXE8 425 aaPredicted RBP17.36■□□□□ 0.37
CIITA-210ENST00000575513 ADCY9O60503 1353 aa17.36■□□□□ 0.37
CIITA-210ENST00000575513 ANKRD36CQ5JPF3 1778 aa17.35■□□□□ 0.37
CIITA-210ENST00000575513 FAM89AQ96GI7 184 aa17.35■□□□□ 0.37
CIITA-210ENST00000575513 CDCA7LQ96GN5 454 aa17.35■□□□□ 0.37
CIITA-210ENST00000575513 LTBP3Q9NS15 1303 aa17.35■□□□□ 0.37
CIITA-210ENST00000575513 COL11A2P13942 1736 aaPredicted RBP17.35■□□□□ 0.37
CIITA-210ENST00000575513 PCCAP05165 728 aaPredicted RBP17.34■□□□□ 0.37
CIITA-210ENST00000575513 HCLS1P14317 486 aaPredicted RBP17.34■□□□□ 0.37
CIITA-210ENST00000575513 LMNB1P20700 586 aa17.34■□□□□ 0.37
CIITA-210ENST00000575513 FKBP5Q13451 457 aaPredicted RBP17.34■□□□□ 0.37
CIITA-210ENST00000575513 SF3B3Q15393 1217 aaKnown RBP17.34■□□□□ 0.37
CIITA-210ENST00000575513 C9orf131Q5VYM1 1079 aa17.34■□□□□ 0.37
CIITA-210ENST00000575513 C3orf67Q6ZVT6 689 aa17.34■□□□□ 0.37
CIITA-210ENST00000575513 RTKN2Q8IZC4 609 aa17.34■□□□□ 0.37
CIITA-210ENST00000575513 SYNE4Q8N205 404 aa17.34■□□□□ 0.37
CIITA-210ENST00000575513 ZC3H4Q9UPT8 1303 aaKnown RBP17.33■□□□□ 0.36
CIITA-210ENST00000575513 NFKBIEO00221 500 aa17.33■□□□□ 0.36
CIITA-210ENST00000575513 BBOX1O75936 387 aa17.33■□□□□ 0.36
CIITA-210ENST00000575513 IGKV5-2P06315 115 aa17.33■□□□□ 0.36
CIITA-210ENST00000575513 CCDC93Q567U6 631 aa17.33■□□□□ 0.36
CIITA-210ENST00000575513 DNAAF4Q8WXU2 420 aa17.33■□□□□ 0.36
CIITA-210ENST00000575513 CACNA1FO60840 1977 aa17.33■□□□□ 0.36
CIITA-210ENST00000575513 IRS4O14654 1257 aaPredicted RBP17.32■□□□□ 0.36
CIITA-210ENST00000575513 TAOK3Q9H2K8 898 aa17.32■□□□□ 0.36
CIITA-210ENST00000575513 ARFGEF2Q9Y6D5 1785 aa17.32■□□□□ 0.36
CIITA-210ENST00000575513 NEURL1BA8MQ27 555 aa17.31■□□□□ 0.36
CIITA-210ENST00000575513 ALDH1L2Q3SY69 923 aa17.31■□□□□ 0.36
CIITA-210ENST00000575513 DDX46Q7L014 1031 aaKnown RBP17.31■□□□□ 0.36
CIITA-210ENST00000575513 LINS1Q8NG48 757 aa17.31■□□□□ 0.36
CIITA-210ENST00000575513 RNF181Q9P0P0 153 aa17.31■□□□□ 0.36
CIITA-210ENST00000575513 ZNF219Q9P2Y4 722 aaPredicted RBP17.31■□□□□ 0.36
CIITA-210ENST00000575513 SLX4Q8IY92 1834 aa17.31■□□□□ 0.36
CIITA-210ENST00000575513 TNRC6CQ9HCJ0 1690 aaKnown RBP17.3■□□□□ 0.36
CIITA-210ENST00000575513 CDHR2Q9BYE9 1310 aa17.3■□□□□ 0.36
CIITA-210ENST00000575513 TMC4Q7Z404 712 aa17.3■□□□□ 0.36
CIITA-210ENST00000575513 PDE8AO60658 829 aa17.29■□□□□ 0.36
CIITA-210ENST00000575513 FKBP4Q02790 459 aaKnown RBP eCLIP17.29■□□□□ 0.36
CIITA-210ENST00000575513 RASSF7Q02833 373 aa17.29■□□□□ 0.36
CIITA-210ENST00000575513 GCKRQ14397 625 aa17.29■□□□□ 0.36
CIITA-210ENST00000575513 MRPL50Q8N5N7 158 aaKnown RBP17.29■□□□□ 0.36
CIITA-210ENST00000575513 PSMD1Q99460 953 aa17.29■□□□□ 0.36
CIITA-210ENST00000575513 TMX4Q9H1E5 349 aaPredicted RBP17.29■□□□□ 0.36
CIITA-210ENST00000575513 ATP6V0A2Q9Y487 856 aa17.29■□□□□ 0.36
CIITA-210ENST00000575513 ABCC4O15439 1325 aa17.28■□□□□ 0.36
CIITA-210ENST00000575513 H7C1W4 665 aa17.28■□□□□ 0.36
CIITA-210ENST00000575513 PPEF1O14829 653 aaPredicted RBP17.28■□□□□ 0.36
CIITA-210ENST00000575513 PRELPP51888 382 aa17.28■□□□□ 0.36
CIITA-210ENST00000575513 HNRNPUQ00839 825 aaKnown RBP eCLIP17.28■□□□□ 0.36
CIITA-210ENST00000575513 GRAPQ13588 217 aa17.28■□□□□ 0.36
CIITA-210ENST00000575513 CWF19L2Q2TBE0 894 aaKnown RBP17.28■□□□□ 0.36
CIITA-210ENST00000575513 RTL5Q5HYW3 569 aaPredicted RBP17.28■□□□□ 0.36
CIITA-210ENST00000575513 SP8Q8IXZ3 490 aa17.28■□□□□ 0.36
CIITA-210ENST00000575513 GRAPLQ8TC17 118 aaPredicted RBP17.28■□□□□ 0.36
CIITA-210ENST00000575513 SSH1Q8WYL5 1049 aa17.28■□□□□ 0.36
CIITA-210ENST00000575513 PTPRCP08575 1304 aa17.27■□□□□ 0.36
CIITA-210ENST00000575513 BRPF1P55201 1214 aaPredicted RBP17.27■□□□□ 0.36
CIITA-210ENST00000575513 BEND3Q5T5X7 828 aa17.27■□□□□ 0.36
CIITA-210ENST00000575513 GPBP1L1Q9HC44 474 aaPredicted RBP17.27■□□□□ 0.36
CIITA-210ENST00000575513 CCDC152Q4G0S7 254 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms