RNA–Protein interactions for RNA: ENST00000574545.1

SCARF1-208, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 894 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-208ENST00000574545 ALDH1B1P30837 517 aa25.56■■□□□ 1.68
SCARF1-208ENST00000574545 HOXA10P31260 410 aaPredicted RBP25.56■■□□□ 1.68
SCARF1-208ENST00000574545 SOGA3Q5TF21 947 aa25.56■■□□□ 1.68
SCARF1-208ENST00000574545 NLRP10Q86W26 655 aa25.56■■□□□ 1.68
SCARF1-208ENST00000574545 ELL2O00472 640 aaPredicted RBP25.55■■□□□ 1.68
SCARF1-208ENST00000574545 PLBD2Q8NHP8 589 aa25.55■■□□□ 1.68
SCARF1-208ENST00000574545 UTP14AQ9BVJ6 771 aaKnown RBP25.55■■□□□ 1.68
SCARF1-208ENST00000574545 HYPKQ9NX55 129 aa25.55■■□□□ 1.68
SCARF1-208ENST00000574545 ANKRD13DQ6ZTN6 518 aa25.54■■□□□ 1.68
SCARF1-208ENST00000574545 C3orf67Q6ZVT6 689 aa25.54■■□□□ 1.68
SCARF1-208ENST00000574545 TAOK3Q9H2K8 898 aa25.54■■□□□ 1.68
SCARF1-208ENST00000574545 OLFM4Q6UX06 510 aa25.53■■□□□ 1.68
SCARF1-208ENST00000574545 ANKRD36CQ5JPF3 1778 aa25.53■■□□□ 1.68
SCARF1-208ENST00000574545 CCDC93Q567U6 631 aa25.52■■□□□ 1.68
SCARF1-208ENST00000574545 RNF123Q5XPI4 1314 aa25.52■■□□□ 1.68
SCARF1-208ENST00000574545 KDM2BQ8NHM5 1336 aa25.52■■□□□ 1.68
SCARF1-208ENST00000574545 SNED1Q8TER0 1413 aa25.52■■□□□ 1.68
SCARF1-208ENST00000574545 DICER1Q9UPY3 1922 aaKnown RBP25.51■■□□□ 1.67
SCARF1-208ENST00000574545 GLTPD2A6NH11 291 aa25.51■■□□□ 1.67
SCARF1-208ENST00000574545 TSPYL6Q8N831 410 aa25.51■■□□□ 1.67
SCARF1-208ENST00000574545 ISCA1Q9BUE6 129 aa25.51■■□□□ 1.67
SCARF1-208ENST00000574545 TOMM70O94826 608 aa25.5■■□□□ 1.67
SCARF1-208ENST00000574545 IL16Q14005 1332 aa25.5■■□□□ 1.67
SCARF1-208ENST00000574545 SYNE4Q8N205 404 aa25.5■■□□□ 1.67
SCARF1-208ENST00000574545 TSR2Q969E8 191 aaKnown RBP25.5■■□□□ 1.67
SCARF1-208ENST00000574545 CRAMP1Q96RY5 1269 aa25.5■■□□□ 1.67
SCARF1-208ENST00000574545 PHAXQ9H814 394 aaKnown RBP25.5■■□□□ 1.67
SCARF1-208ENST00000574545 NLRP3Q96P20 1036 aa25.49■■□□□ 1.67
SCARF1-208ENST00000574545 RRAGCQ9HB90 399 aa25.49■■□□□ 1.67
SCARF1-208ENST00000574545 FKBP4Q02790 459 aaKnown RBP eCLIP25.48■■□□□ 1.67
SCARF1-208ENST00000574545 TIAM2Q8IVF5 1701 aa25.47■■□□□ 1.67
SCARF1-208ENST00000574545 TRIM28Q13263 835 aaKnown RBP25.47■■□□□ 1.67
SCARF1-208ENST00000574545 RTKN2Q8IZC4 609 aa25.47■■□□□ 1.67
SCARF1-208ENST00000574545 RPGRQ92834 1020 aaKnown RBP25.47■■□□□ 1.67
SCARF1-208ENST00000574545 RBM17Q96I25 401 aaKnown RBP25.47■■□□□ 1.67
SCARF1-208ENST00000574545 TRMT112Q9UI30 125 aaKnown RBP25.47■■□□□ 1.67
SCARF1-208ENST00000574545 SH3TC1Q8TE82 1336 aa25.45■■□□□ 1.66
SCARF1-208ENST00000574545 POTECB2RU33 542 aa25.45■■□□□ 1.66
SCARF1-208ENST00000574545 HCLS1P14317 486 aaPredicted RBP25.45■■□□□ 1.66
SCARF1-208ENST00000574545 CCDC30Q5VVM6 783 aa25.45■■□□□ 1.66
SCARF1-208ENST00000574545 CHMP4AQ9BY43 222 aa25.45■■□□□ 1.66
SCARF1-208ENST00000574545 CEP350Q5VT06 3117 aa25.45■■□□□ 1.66
SCARF1-208ENST00000574545 ATP5J2-PTCD1G3V325 749 aa25.44■■□□□ 1.66
SCARF1-208ENST00000574545 CC2D2BQ6DHV5 1058 aa25.44■■□□□ 1.66
SCARF1-208ENST00000574545 WDR63Q8IWG1 891 aa25.44■■□□□ 1.66
SCARF1-208ENST00000574545 HSPA6P17066 643 aa25.43■■□□□ 1.66
SCARF1-208ENST00000574545 SLC51AQ86UW1 340 aa25.43■■□□□ 1.66
SCARF1-208ENST00000574545 FAM9BQ8IZU0 186 aa25.43■■□□□ 1.66
SCARF1-208ENST00000574545 RBM46Q8TBY0 533 aaKnown RBP25.43■■□□□ 1.66
SCARF1-208ENST00000574545 PSMD1Q99460 953 aa25.43■■□□□ 1.66
SCARF1-208ENST00000574545 ZNF277Q9NRM2 450 aaPredicted RBP25.43■■□□□ 1.66
SCARF1-208ENST00000574545 DPY19L2Q6NUT2 758 aa25.42■■□□□ 1.66
SCARF1-208ENST00000574545 SALL2Q9Y467 1007 aaPredicted RBP25.42■■□□□ 1.66
SCARF1-208ENST00000574545 GOLGA2Q08379 1002 aa25.41■■□□□ 1.66
SCARF1-208ENST00000574545 RIC3Q7Z5B4 369 aa25.41■■□□□ 1.66
SCARF1-208ENST00000574545 ZNF428Q96B54 188 aa25.41■■□□□ 1.66
SCARF1-208ENST00000574545 LAMB2P55268 1798 aa25.41■■□□□ 1.66
SCARF1-208ENST00000574545 ABCC4O15439 1325 aa25.4■■□□□ 1.66
SCARF1-208ENST00000574545 PPEF1O14829 653 aaPredicted RBP25.4■■□□□ 1.66
SCARF1-208ENST00000574545 VEGFAP15692 232 aaPredicted RBP25.4■■□□□ 1.66
SCARF1-208ENST00000574545 TWISTNBQ3B726 338 aaPredicted RBP25.4■■□□□ 1.66
SCARF1-208ENST00000574545 FAM89AQ96GI7 184 aa25.4■■□□□ 1.66
SCARF1-208ENST00000574545 WDR90Q96KV7 1748 aa25.4■■□□□ 1.66
SCARF1-208ENST00000574545 FANCIQ9NVI1 1328 aa25.39■■□□□ 1.66
SCARF1-208ENST00000574545 GRIPAP1Q4V328 841 aa25.39■■□□□ 1.66
SCARF1-208ENST00000574545 SPINK5Q9NQ38 1064 aaPredicted RBP25.39■■□□□ 1.66
SCARF1-208ENST00000574545 IARSP41252 1262 aaKnown RBP25.38■■□□□ 1.65
SCARF1-208ENST00000574545 ATP6V0A2Q9Y487 856 aa25.38■■□□□ 1.65
SCARF1-208ENST00000574545 BBOX1O75936 387 aa25.37■■□□□ 1.65
SCARF1-208ENST00000574545 DDNO94850 711 aaPredicted RBP25.37■■□□□ 1.65
SCARF1-208ENST00000574545 SF3B3Q15393 1217 aaKnown RBP25.37■■□□□ 1.65
SCARF1-208ENST00000574545 C16orf71Q8IYS4 520 aaPredicted RBP25.37■■□□□ 1.65
SCARF1-208ENST00000574545 MYD88Q99836 296 aa25.37■■□□□ 1.65
SCARF1-208ENST00000574545 METTL22Q9BUU2 404 aaPredicted RBP25.37■■□□□ 1.65
SCARF1-208ENST00000574545 DDX60Q8IY21 1712 aaKnown RBP25.37■■□□□ 1.65
SCARF1-208ENST00000574545 TCERG1O14776 1098 aaKnown RBP25.36■■□□□ 1.65
SCARF1-208ENST00000574545 FZD9O00144 591 aa25.35■■□□□ 1.65
SCARF1-208ENST00000574545 VAMP4O75379 141 aa25.35■■□□□ 1.65
SCARF1-208ENST00000574545 FSTL1Q12841 308 aa25.35■■□□□ 1.65
SCARF1-208ENST00000574545 KSR2Q6VAB6 950 aa25.35■■□□□ 1.65
SCARF1-208ENST00000574545 G2E3Q7L622 706 aa25.35■■□□□ 1.65
SCARF1-208ENST00000574545 CCDC191Q8NCU4 936 aa25.35■■□□□ 1.65
SCARF1-208ENST00000574545 DDX58O95786 925 aaKnown RBP25.34■■□□□ 1.65
SCARF1-208ENST00000574545 GRAPQ13588 217 aa25.34■■□□□ 1.65
SCARF1-208ENST00000574545 DDX46Q7L014 1031 aaKnown RBP25.34■■□□□ 1.65
SCARF1-208ENST00000574545 SP8Q8IXZ3 490 aa25.34■■□□□ 1.65
SCARF1-208ENST00000574545 ZBTB38Q8NAP3 1195 aaPredicted RBP25.34■■□□□ 1.65
SCARF1-208ENST00000574545 GRAPLQ8TC17 118 aaPredicted RBP25.34■■□□□ 1.65
SCARF1-208ENST00000574545 COL4A5P29400 1685 aa25.33■■□□□ 1.65
SCARF1-208ENST00000574545 PI4KAP2A4QPH2 592 aa25.33■■□□□ 1.65
SCARF1-208ENST00000574545 IRS4O14654 1257 aaPredicted RBP25.33■■□□□ 1.65
SCARF1-208ENST00000574545 SLC4A2P04920 1241 aa25.33■■□□□ 1.65
SCARF1-208ENST00000574545 RTL5Q5HYW3 569 aaPredicted RBP25.33■■□□□ 1.65
SCARF1-208ENST00000574545 PI4KAP1Q8N8J0 262 aa25.33■■□□□ 1.65
SCARF1-208ENST00000574545 STK31Q9BXU1 1019 aa25.33■■□□□ 1.65
SCARF1-208ENST00000574545 MAP3K2Q9Y2U5 619 aa25.33■■□□□ 1.65
SCARF1-208ENST00000574545 ZNF541Q9H0D2 1346 aa25.33■■□□□ 1.64
SCARF1-208ENST00000574545 EXOSC9Q06265 439 aaKnown RBP25.32■■□□□ 1.64
SCARF1-208ENST00000574545 L3MBTL3Q96JM7 780 aaPredicted RBP25.32■■□□□ 1.64
SCARF1-208ENST00000574545 RTFDC1Q9BY42 306 aaPredicted RBP25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms