RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 COL16A1Q07092 1604 aaPredicted RBP12.69□□□□□ -0.38
USP43-205ENST00000574408 ANAPC15P60006 121 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 KIAA1211Q6ZU35 1233 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 CCDC191Q8NCU4 936 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 STARD3NLO95772 234 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 TFCP2Q12800 502 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 EVI5LQ96CN4 794 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 BOLA2Q9H3K6 86 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 LTBP4Q8N2S1 1624 aa12.69□□□□□ -0.38
USP43-205ENST00000574408 TNPO1Q92973 898 aaKnown RBP12.68□□□□□ -0.38
USP43-205ENST00000574408 RAD50Q92878 1312 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 COL22A1Q8NFW1 1626 aaPredicted RBP12.68□□□□□ -0.38
USP43-205ENST00000574408 A0A0G2JS52 829 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 NUTM2BA6NNL0 878 aaPredicted RBP12.68□□□□□ -0.38
USP43-205ENST00000574408 NUTM2EB1AL46 878 aaPredicted RBP12.68□□□□□ -0.38
USP43-205ENST00000574408 FOXO4P98177 505 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 NUTM2AQ8IVF1 878 aaPredicted RBP12.68□□□□□ -0.38
USP43-205ENST00000574408 PIP4K2BP78356 416 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 RAB3GAP1Q15042 981 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 KIF6Q6ZMV9 814 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 RUFY2Q8WXA3 655 aa12.68□□□□□ -0.38
USP43-205ENST00000574408 EPB41L2O43491 1005 aaKnown RBP12.67□□□□□ -0.38
USP43-205ENST00000574408 HSPA4P34932 840 aa12.67□□□□□ -0.38
USP43-205ENST00000574408 UPF3BQ9BZI7 483 aaKnown RBP12.67□□□□□ -0.38
USP43-205ENST00000574408 LSG1Q9H089 658 aaKnown RBP12.67□□□□□ -0.38
USP43-205ENST00000574408 BCL9O00512 1426 aa12.67□□□□□ -0.38
USP43-205ENST00000574408 TNNI3KQ59H18 835 aa12.67□□□□□ -0.38
USP43-205ENST00000574408 FPGT-TNNI3KV9GXZ4 949 aa12.67□□□□□ -0.38
USP43-205ENST00000574408 NUP188Q5SRE5 1749 aa12.67□□□□□ -0.38
USP43-205ENST00000574408 TCIRG1Q13488 830 aa12.66□□□□□ -0.38
USP43-205ENST00000574408 NOL8Q76FK4 1167 aaKnown RBP12.66□□□□□ -0.38
USP43-205ENST00000574408 DBNLQ9UJU6 430 aaKnown RBP12.66□□□□□ -0.38
USP43-205ENST00000574408 PRIM1P49642 420 aaKnown RBP12.66□□□□□ -0.38
USP43-205ENST00000574408 ISCA1Q9BUE6 129 aa12.66□□□□□ -0.38
USP43-205ENST00000574408 ITGB4P16144 1822 aa12.66□□□□□ -0.38
USP43-205ENST00000574408 SLC4A9Q96Q91 983 aa12.66□□□□□ -0.38
USP43-205ENST00000574408 FSD1Q9BTV5 496 aa12.66□□□□□ -0.38
USP43-205ENST00000574408 SSFA2P28290 1259 aa12.65□□□□□ -0.38
USP43-205ENST00000574408 ZGPATQ8N5A5 531 aaKnown RBP12.65□□□□□ -0.38
USP43-205ENST00000574408 GBP4Q96PP9 640 aa12.65□□□□□ -0.38
USP43-205ENST00000574408 CCDC9Q9Y3X0 531 aaKnown RBP12.65□□□□□ -0.38
USP43-205ENST00000574408 DDB1Q16531 1140 aa12.65□□□□□ -0.39
USP43-205ENST00000574408 TMX3Q96JJ7 454 aa12.65□□□□□ -0.39
USP43-205ENST00000574408 DBNDD2Q9BQY9 259 aa12.65□□□□□ -0.39
USP43-205ENST00000574408 SPATA31A1Q5TZJ5 1347 aa12.65□□□□□ -0.39
USP43-205ENST00000574408 DDX11L8A8MPP1 907 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 MCM2P49736 904 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 FAM227BQ96M60 508 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 CDCA7Q9BWT1 371 aaPredicted RBP12.64□□□□□ -0.39
USP43-205ENST00000574408 PHLPP1O60346 1717 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 TJP1Q07157 1748 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 NMIQ13287 307 aaPredicted RBP12.64□□□□□ -0.39
USP43-205ENST00000574408 UBE2Q2Q8WVN8 375 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 IL17RAQ96F46 866 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 EDC3Q96F86 508 aaKnown RBP12.64□□□□□ -0.39
USP43-205ENST00000574408 ZNF594Q96JF6 807 aaPredicted RBP12.64□□□□□ -0.39
USP43-205ENST00000574408 ZBTB1Q9Y2K1 713 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 SNX14Q9Y5W7 946 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 PLCH1Q4KWH8 1693 aa12.64□□□□□ -0.39
USP43-205ENST00000574408 HIP1O00291 1037 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 CYP19A1P11511 503 aaPredicted RBP12.63□□□□□ -0.39
USP43-205ENST00000574408 PTH1RQ03431 593 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 RASEFQ8IZ41 740 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 GPTP24298 496 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 FAM89AQ96GI7 184 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 MAP3K15Q6ZN16 1313 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 ATP5JP18859 108 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 ATG9AQ7Z3C6 839 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 CWC22Q9HCG8 908 aaKnown RBP12.63□□□□□ -0.39
USP43-205ENST00000574408 NDUFB9Q9Y6M9 179 aa12.63□□□□□ -0.39
USP43-205ENST00000574408 TRIM28Q13263 835 aaKnown RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 HLFQ16534 295 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 TPRNQ4KMQ1 711 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 ACSBG1Q96GR2 724 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 NEUROD6Q96NK8 337 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 CCDC85AQ96PX6 553 aaPredicted RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 EYA2O00167 538 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 TRAK2O60296 914 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 TOM1O60784 492 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 IL15P40933 162 aaPredicted RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 NUCB2P80303 420 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 LRRC24Q50LG9 513 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 GIGYF2Q6Y7W6 1299 aaKnown RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 DNAJC2Q99543 621 aaKnown RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 LRP6O75581 1613 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 CCDC171Q6TFL3 1326 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 A0A0D9SFI3 127 aa12.62□□□□□ -0.39
USP43-205ENST00000574408 PRPF40BQ6NWY9 871 aaKnown RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 THRAP3Q9Y2W1 955 aaKnown RBP12.62□□□□□ -0.39
USP43-205ENST00000574408 PCCAP05165 728 aaPredicted RBP12.61□□□□□ -0.39
USP43-205ENST00000574408 KCNJ4P48050 445 aa12.61□□□□□ -0.39
USP43-205ENST00000574408 PKP1Q13835 747 aa12.61□□□□□ -0.39
USP43-205ENST00000574408 CCDC57Q2TAC2 916 aa12.61□□□□□ -0.39
USP43-205ENST00000574408 PUS3Q9BZE2 481 aaKnown RBP12.6□□□□□ -0.39
USP43-205ENST00000574408 SPATA31A5Q5VU36 1347 aa12.6□□□□□ -0.39
USP43-205ENST00000574408 SPATA31A7Q8IWB4 1347 aa12.6□□□□□ -0.39
USP43-205ENST00000574408 TIMM10P62072 90 aa12.6□□□□□ -0.39
USP43-205ENST00000574408 SYNE4Q8N205 404 aa12.6□□□□□ -0.39
USP43-205ENST00000574408 MARCH10Q8NA82 808 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms