RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TCEANC2Q96MN5 208 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 ORC3Q9UBD5 711 aaPredicted RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 ZKSCAN5Q9Y2L8 839 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 PPFIA3O75145 1194 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 HAND2P61296 217 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 DDX46Q7L014 1031 aaKnown RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 SNRKQ9NRH2 765 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 FLT4P35916 1363 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 KDM6BO15054 1643 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 SNRPA1P09661 255 aaKnown RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 CHMLP26374 656 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 KRT28Q7Z3Y7 464 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 PHAXQ9H814 394 aaKnown RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 TRMT112Q9UI30 125 aaKnown RBP17.82■□□□□ 0.44
CIITA-204ENST00000570546 TTC41PQ6P2S7 1318 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 ANO6Q4KMQ2 910 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 HSP90AB3PQ58FF7 597 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 ANKRD13DQ6ZTN6 518 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 CCDC148Q8NFR7 591 aa17.82■□□□□ 0.44
CIITA-204ENST00000570546 AK2P54819 239 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 NOLC1Q14978 699 aaKnown RBP eCLIP17.81■□□□□ 0.44
CIITA-204ENST00000570546 KSR2Q6VAB6 950 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 BICDL1Q6ZP65 573 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 CCDC102AQ96A19 550 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 ABCC2Q92887 1545 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 GRM8O00222 908 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 KIF5CO60282 957 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 NMIQ13287 307 aaPredicted RBP17.81■□□□□ 0.44
CIITA-204ENST00000570546 INTS4Q96HW7 963 aaKnown RBP17.81■□□□□ 0.44
CIITA-204ENST00000570546 PPP4R3BQ5MIZ7 849 aa17.81■□□□□ 0.44
CIITA-204ENST00000570546 NCOA7Q8NI08 942 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 FAM200AQ8TCP9 573 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 FAM193AP78312 1265 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 TTF1Q15361 905 aaPredicted RBP17.8■□□□□ 0.44
CIITA-204ENST00000570546 ZFYVE27Q5T4F4 411 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 GOLGA6L10A6NI86 522 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 AKAP4Q5JQC9 854 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 BMP2KQ9NSY1 1161 aaPredicted RBP17.8■□□□□ 0.44
CIITA-204ENST00000570546 KDM5CP41229 1560 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 SSBP05455 408 aaKnown RBP eCLIP17.8■□□□□ 0.44
CIITA-204ENST00000570546 CAVIN4Q5BKX8 364 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 CEP135Q66GS9 1140 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 RAB11FIP4Q86YS3 637 aa17.8■□□□□ 0.44
CIITA-204ENST00000570546 RNF41Q9H4P4 317 aaPredicted RBP17.8■□□□□ 0.44
CIITA-204ENST00000570546 IARSP41252 1262 aaKnown RBP17.79■□□□□ 0.44
CIITA-204ENST00000570546 SYCP1Q15431 976 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 PA2G4Q9UQ80 394 aaKnown RBP17.79■□□□□ 0.44
CIITA-204ENST00000570546 LRRC2Q9BYS8 371 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 HS1BP3Q53T59 392 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 CCDC144CPQ8IYA2 1237 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 XAGE3Q8WTP9 111 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 ZNF397Q8NF99 534 aaPredicted RBP17.79■□□□□ 0.44
CIITA-204ENST00000570546 MAP3K5Q99683 1374 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 METAP2P50579 478 aaKnown RBP eCLIP17.79■□□□□ 0.44
CIITA-204ENST00000570546 SNW1Q13573 536 aaKnown RBP17.79■□□□□ 0.44
CIITA-204ENST00000570546 TMEM67Q5HYA8 995 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 Q6ZUG5 572 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 PAXBP1Q9Y5B6 917 aa17.79■□□□□ 0.44
CIITA-204ENST00000570546 CTCFLQ8NI51 663 aaPredicted RBP17.78■□□□□ 0.44
CIITA-204ENST00000570546 DACT1Q9NYF0 836 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 SOS1Q07889 1333 aaPredicted RBP17.78■□□□□ 0.44
CIITA-204ENST00000570546 ERLIN2O94905 339 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 MCMDC2Q4G0Z9 681 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 ATP7AQ04656 1500 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 RANBP6O60518 1105 aaKnown RBP17.78■□□□□ 0.44
CIITA-204ENST00000570546 IL13P35225 146 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 CCDC150Q8NCX0 1101 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 OTUD7AQ8TE49 926 aaPredicted RBP17.78■□□□□ 0.44
CIITA-204ENST00000570546 GBP3Q9H0R5 595 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 TSPYL1Q9H0U9 437 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 KDM5AP29375 1690 aaKnown RBP17.78■□□□□ 0.44
CIITA-204ENST00000570546 GPTP24298 496 aa17.78■□□□□ 0.44
CIITA-204ENST00000570546 PTPRTO14522 1441 aa17.77■□□□□ 0.44
CIITA-204ENST00000570546 KIF4BQ2VIQ3 1234 aa17.77■□□□□ 0.44
CIITA-204ENST00000570546 ISM2Q6H9L7 571 aa17.77■□□□□ 0.44
CIITA-204ENST00000570546 COPS6Q7L5N1 327 aa17.77■□□□□ 0.44
CIITA-204ENST00000570546 IQCA1Q86XH1 822 aa17.77■□□□□ 0.44
CIITA-204ENST00000570546 ZNF652Q9Y2D9 606 aa17.77■□□□□ 0.44
CIITA-204ENST00000570546 NUTM2BA6NNL0 878 aaPredicted RBP17.77■□□□□ 0.43
CIITA-204ENST00000570546 NUTM2EB1AL46 878 aaPredicted RBP17.77■□□□□ 0.43
CIITA-204ENST00000570546 LDHAL6AQ6ZMR3 332 aa17.77■□□□□ 0.43
CIITA-204ENST00000570546 MICU3Q86XE3 530 aa17.77■□□□□ 0.43
CIITA-204ENST00000570546 NUTM2AQ8IVF1 878 aaPredicted RBP17.77■□□□□ 0.43
CIITA-204ENST00000570546 CCDC171Q6TFL3 1326 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 KLF18A0A0U1RQI7 1052 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 CPLX3Q8WVH0 158 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 EYA1Q99502 592 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 TMX1Q9H3N1 280 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 USP5P45974 858 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 CCDC186Q7Z3E2 898 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 CREB3L3Q68CJ9 461 aa17.76■□□□□ 0.43
CIITA-204ENST00000570546 G2E3Q7L622 706 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 PRM3Q9NNZ6 103 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 NCKAP5LQ9HCH0 1330 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 ARHGEF5Q12774 1597 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 CCDC102BQ68D86 513 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 RUFY3Q7L099 469 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 CATIPQ7Z7H3 387 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 DNAJC25Q9H1X3 360 aa17.75■□□□□ 0.43
CIITA-204ENST00000570546 TTC12Q9H892 705 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms