RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 C9orf131Q5VYM1 1079 aa16.84■□□□□ 0.29
CNOT1-220ENST00000569916 ANKRD13DQ6ZTN6 518 aa16.84■□□□□ 0.29
CNOT1-220ENST00000569916 NLRP10Q86W26 655 aa16.84■□□□□ 0.29
CNOT1-220ENST00000569916 PHAXQ9H814 394 aaKnown RBP16.84■□□□□ 0.29
CNOT1-220ENST00000569916 CACNA1FO60840 1977 aa16.84■□□□□ 0.29
CNOT1-220ENST00000569916 NFKBIEO00221 500 aa16.83■□□□□ 0.28
CNOT1-220ENST00000569916 PRELPP51888 382 aa16.83■□□□□ 0.28
CNOT1-220ENST00000569916 CCDC30Q5VVM6 783 aa16.83■□□□□ 0.28
CNOT1-220ENST00000569916 RNF123Q5XPI4 1314 aa16.83■□□□□ 0.28
CNOT1-220ENST00000569916 UTP14AQ9BVJ6 771 aaKnown RBP16.83■□□□□ 0.28
CNOT1-220ENST00000569916 RNF181Q9P0P0 153 aa16.83■□□□□ 0.28
CNOT1-220ENST00000569916 ZNF219Q9P2Y4 722 aaPredicted RBP16.83■□□□□ 0.28
CNOT1-220ENST00000569916 TWISTNBQ3B726 338 aaPredicted RBP16.82■□□□□ 0.28
CNOT1-220ENST00000569916 ZNF521Q96K83 1311 aa16.81■□□□□ 0.28
CNOT1-220ENST00000569916 C3orf67Q6ZVT6 689 aa16.81■□□□□ 0.28
CNOT1-220ENST00000569916 ZNF526Q8TF50 670 aaPredicted RBP16.81■□□□□ 0.28
CNOT1-220ENST00000569916 C7orf43Q8WVR3 580 aa16.81■□□□□ 0.28
CNOT1-220ENST00000569916 ISCA1Q9BUE6 129 aa16.81■□□□□ 0.28
CNOT1-220ENST00000569916 CHMP4AQ9BY43 222 aa16.81■□□□□ 0.28
CNOT1-220ENST00000569916 SPINK5Q9NQ38 1064 aaPredicted RBP16.81■□□□□ 0.28
CNOT1-220ENST00000569916 LTBP3Q9NS15 1303 aa16.8■□□□□ 0.28
CNOT1-220ENST00000569916 CCER2I3L3R5 266 aa16.8■□□□□ 0.28
CNOT1-220ENST00000569916 LMNB1P20700 586 aa16.8■□□□□ 0.28
CNOT1-220ENST00000569916 GOLGA2Q08379 1002 aa16.8■□□□□ 0.28
CNOT1-220ENST00000569916 SLC10A5Q5PT55 438 aa16.8■□□□□ 0.28
CNOT1-220ENST00000569916 GPBP1L1Q9HC44 474 aaPredicted RBP16.8■□□□□ 0.28
CNOT1-220ENST00000569916 SNED1Q8TER0 1413 aa16.79■□□□□ 0.28
CNOT1-220ENST00000569916 ATP5J2-PTCD1G3V325 749 aa16.79■□□□□ 0.28
CNOT1-220ENST00000569916 ALDH1B1P30837 517 aa16.79■□□□□ 0.28
CNOT1-220ENST00000569916 HOXA10P31260 410 aaPredicted RBP16.79■□□□□ 0.28
CNOT1-220ENST00000569916 SOGA3Q5TF21 947 aa16.79■□□□□ 0.28
CNOT1-220ENST00000569916 SYNE4Q8N205 404 aa16.79■□□□□ 0.28
CNOT1-220ENST00000569916 TRMT112Q9UI30 125 aaKnown RBP16.79■□□□□ 0.28
CNOT1-220ENST00000569916 TAF1P21675 1872 aa16.78■□□□□ 0.28
CNOT1-220ENST00000569916 SH3TC1Q8TE82 1336 aa16.78■□□□□ 0.28
CNOT1-220ENST00000569916 TCERG1O14776 1098 aaKnown RBP16.78■□□□□ 0.28
CNOT1-220ENST00000569916 RIC3Q7Z5B4 369 aa16.78■□□□□ 0.28
CNOT1-220ENST00000569916 RPGRQ92834 1020 aaKnown RBP16.78■□□□□ 0.28
CNOT1-220ENST00000569916 TAOK3Q9H2K8 898 aa16.78■□□□□ 0.28
CNOT1-220ENST00000569916 ZC3H4Q9UPT8 1303 aaKnown RBP16.77■□□□□ 0.28
CNOT1-220ENST00000569916 EXOSC9Q06265 439 aaKnown RBP16.77■□□□□ 0.28
CNOT1-220ENST00000569916 TRIM28Q13263 835 aaKnown RBP16.77■□□□□ 0.28
CNOT1-220ENST00000569916 CCDC93Q567U6 631 aa16.77■□□□□ 0.28
CNOT1-220ENST00000569916 OLFM4Q6UX06 510 aa16.77■□□□□ 0.28
CNOT1-220ENST00000569916 ZNF428Q96B54 188 aa16.77■□□□□ 0.28
CNOT1-220ENST00000569916 NLRP3Q96P20 1036 aa16.77■□□□□ 0.28
CNOT1-220ENST00000569916 STK31Q9BXU1 1019 aa16.77■□□□□ 0.28
CNOT1-220ENST00000569916 MYH16Q9H6N6 1097 aa16.77■□□□□ 0.28
CNOT1-220ENST00000569916 VAMP4O75379 141 aa16.76■□□□□ 0.27
CNOT1-220ENST00000569916 HCLS1P14317 486 aaPredicted RBP16.76■□□□□ 0.27
CNOT1-220ENST00000569916 CRAMP1Q96RY5 1269 aa16.76■□□□□ 0.27
CNOT1-220ENST00000569916 LRRC37AA6NMS7 1700 aa16.76■□□□□ 0.27
CNOT1-220ENST00000569916 DDX58O95786 925 aaKnown RBP16.75■□□□□ 0.27
CNOT1-220ENST00000569916 G2E3Q7L622 706 aa16.75■□□□□ 0.27
CNOT1-220ENST00000569916 RBM17Q96I25 401 aaKnown RBP16.75■□□□□ 0.27
CNOT1-220ENST00000569916 MYD88Q99836 296 aa16.75■□□□□ 0.27
CNOT1-220ENST00000569916 METTL22Q9BUU2 404 aaPredicted RBP16.75■□□□□ 0.27
CNOT1-220ENST00000569916 ABCC4O15439 1325 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 KIF3CO14782 793 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 SLC4A2P04920 1241 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 C1QTNF8P60827 252 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 SLC51AQ86UW1 340 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 FAM89AQ96GI7 184 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 MAP3K2Q9Y2U5 619 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 COL4A1P02462 1669 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 MYH3P11055 1940 aa16.74■□□□□ 0.27
CNOT1-220ENST00000569916 PI4KAP2A4QPH2 592 aa16.73■□□□□ 0.27
CNOT1-220ENST00000569916 PPEF1O14829 653 aaPredicted RBP16.73■□□□□ 0.27
CNOT1-220ENST00000569916 FKBP4Q02790 459 aaKnown RBP eCLIP16.73■□□□□ 0.27
CNOT1-220ENST00000569916 KSR2Q6VAB6 950 aa16.73■□□□□ 0.27
CNOT1-220ENST00000569916 PI4KAP1Q8N8J0 262 aa16.73■□□□□ 0.27
CNOT1-220ENST00000569916 NMRK2Q9NPI5 230 aa16.73■□□□□ 0.27
CNOT1-220ENST00000569916 WDR90Q96KV7 1748 aa16.73■□□□□ 0.27
CNOT1-220ENST00000569916 FLIIQ13045 1269 aa16.72■□□□□ 0.27
CNOT1-220ENST00000569916 RTL5Q5HYW3 569 aaPredicted RBP16.72■□□□□ 0.27
CNOT1-220ENST00000569916 RTKN2Q8IZC4 609 aa16.72■□□□□ 0.27
CNOT1-220ENST00000569916 CCDC191Q8NCU4 936 aa16.72■□□□□ 0.27
CNOT1-220ENST00000569916 KDM2BQ8NHM5 1336 aa16.71■□□□□ 0.27
CNOT1-220ENST00000569916 DIEXFQ68CQ4 756 aaKnown RBP16.71■□□□□ 0.27
CNOT1-220ENST00000569916 CC2D2BQ6DHV5 1058 aa16.71■□□□□ 0.27
CNOT1-220ENST00000569916 ZBTB38Q8NAP3 1195 aaPredicted RBP16.71■□□□□ 0.27
CNOT1-220ENST00000569916 CWC25Q9NXE8 425 aaPredicted RBP16.71■□□□□ 0.27
CNOT1-220ENST00000569916 COL4A5P29400 1685 aa16.7■□□□□ 0.26
CNOT1-220ENST00000569916 GLTPD2A6NH11 291 aa16.7■□□□□ 0.26
CNOT1-220ENST00000569916 IRS4O14654 1257 aaPredicted RBP16.7■□□□□ 0.26
CNOT1-220ENST00000569916 PCCAP05165 728 aaPredicted RBP16.7■□□□□ 0.26
CNOT1-220ENST00000569916 IGKV5-2P06315 115 aa16.7■□□□□ 0.26
CNOT1-220ENST00000569916 PSMD1Q99460 953 aa16.7■□□□□ 0.26
CNOT1-220ENST00000569916 ZNF277Q9NRM2 450 aaPredicted RBP16.7■□□□□ 0.26
CNOT1-220ENST00000569916 SF3B3Q15393 1217 aaKnown RBP16.69■□□□□ 0.26
CNOT1-220ENST00000569916 DDX46Q7L014 1031 aaKnown RBP16.69■□□□□ 0.26
CNOT1-220ENST00000569916 ATP6V0A2Q9Y487 856 aa16.69■□□□□ 0.26
CNOT1-220ENST00000569916 LTBP1Q14766 1721 aa16.69■□□□□ 0.26
CNOT1-220ENST00000569916 DUOX1Q9NRD9 1551 aa16.68■□□□□ 0.26
CNOT1-220ENST00000569916 E9PSI1 815 aa16.68■□□□□ 0.26
CNOT1-220ENST00000569916 NEXNQ0ZGT2 675 aa16.68■□□□□ 0.26
CNOT1-220ENST00000569916 FKBP5Q13451 457 aaPredicted RBP16.68■□□□□ 0.26
CNOT1-220ENST00000569916 GRAPQ13588 217 aa16.68■□□□□ 0.26
CNOT1-220ENST00000569916 CWF19L2Q2TBE0 894 aaKnown RBP16.68■□□□□ 0.26
CNOT1-220ENST00000569916 GRAPLQ8TC17 118 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms