RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 TSPYL6Q8N831 410 aa18.63■□□□□ 0.57
COMMD4-225ENST00000569245 ZNF428Q96B54 188 aa18.63■□□□□ 0.57
COMMD4-225ENST00000569245 IBTKQ9P2D0 1353 aaPredicted RBP18.63■□□□□ 0.57
COMMD4-225ENST00000569245 RIC3Q7Z5B4 369 aa18.62■□□□□ 0.57
COMMD4-225ENST00000569245 NLRP10Q86W26 655 aa18.62■□□□□ 0.57
COMMD4-225ENST00000569245 TRMT112Q9UI30 125 aaKnown RBP18.62■□□□□ 0.57
COMMD4-225ENST00000569245 NUP98P52948 1817 aa18.61■□□□□ 0.57
COMMD4-225ENST00000569245 NFKBIEO00221 500 aa18.61■□□□□ 0.57
COMMD4-225ENST00000569245 TWISTNBQ3B726 338 aaPredicted RBP18.61■□□□□ 0.57
COMMD4-225ENST00000569245 NLRP3Q96P20 1036 aa18.61■□□□□ 0.57
COMMD4-225ENST00000569245 STK31Q9BXU1 1019 aa18.61■□□□□ 0.57
COMMD4-225ENST00000569245 PHAXQ9H814 394 aaKnown RBP18.61■□□□□ 0.57
COMMD4-225ENST00000569245 DLEC1Q9Y238 1755 aa18.6■□□□□ 0.57
COMMD4-225ENST00000569245 ATP5J2-PTCD1G3V325 749 aa18.6■□□□□ 0.57
COMMD4-225ENST00000569245 C1QTNF8P60827 252 aa18.6■□□□□ 0.57
COMMD4-225ENST00000569245 CRY2Q49AN0 593 aa18.6■□□□□ 0.57
COMMD4-225ENST00000569245 RBM17Q96I25 401 aaKnown RBP18.6■□□□□ 0.57
COMMD4-225ENST00000569245 TAOK3Q9H2K8 898 aa18.6■□□□□ 0.57
COMMD4-225ENST00000569245 COL11A2P13942 1736 aaPredicted RBP18.6■□□□□ 0.57
COMMD4-225ENST00000569245 SH3TC1Q8TE82 1336 aa18.59■□□□□ 0.57
COMMD4-225ENST00000569245 TCERG1O14776 1098 aaKnown RBP18.59■□□□□ 0.57
COMMD4-225ENST00000569245 DDX58O95786 925 aaKnown RBP18.59■□□□□ 0.57
COMMD4-225ENST00000569245 CCDC93Q567U6 631 aa18.59■□□□□ 0.57
COMMD4-225ENST00000569245 RNF123Q5XPI4 1314 aa18.58■□□□□ 0.57
COMMD4-225ENST00000569245 FANCIQ9NVI1 1328 aa18.58■□□□□ 0.57
COMMD4-225ENST00000569245 HCLS1P14317 486 aaPredicted RBP18.58■□□□□ 0.56
COMMD4-225ENST00000569245 SLC10A5Q5PT55 438 aa18.58■□□□□ 0.56
COMMD4-225ENST00000569245 C3orf67Q6ZVT6 689 aa18.58■□□□□ 0.56
COMMD4-225ENST00000569245 C7orf43Q8WVR3 580 aa18.58■□□□□ 0.56
COMMD4-225ENST00000569245 KDM2BQ8NHM5 1336 aa18.57■□□□□ 0.56
COMMD4-225ENST00000569245 HOXA10P31260 410 aaPredicted RBP18.57■□□□□ 0.56
COMMD4-225ENST00000569245 PRELPP51888 382 aa18.57■□□□□ 0.56
COMMD4-225ENST00000569245 OLFM4Q6UX06 510 aa18.57■□□□□ 0.56
COMMD4-225ENST00000569245 RTKN2Q8IZC4 609 aa18.57■□□□□ 0.56
COMMD4-225ENST00000569245 SYNE4Q8N205 404 aa18.57■□□□□ 0.56
COMMD4-225ENST00000569245 ISCA1Q9BUE6 129 aa18.57■□□□□ 0.56
COMMD4-225ENST00000569245 ZNF521Q96K83 1311 aa18.56■□□□□ 0.56
COMMD4-225ENST00000569245 MYD88Q99836 296 aa18.56■□□□□ 0.56
COMMD4-225ENST00000569245 TMX4Q9H1E5 349 aaPredicted RBP18.56■□□□□ 0.56
COMMD4-225ENST00000569245 MYH16Q9H6N6 1097 aa18.56■□□□□ 0.56
COMMD4-225ENST00000569245 RIC1Q4ADV7 1423 aa18.56■□□□□ 0.56
COMMD4-225ENST00000569245 ZC3H4Q9UPT8 1303 aaKnown RBP18.55■□□□□ 0.56
COMMD4-225ENST00000569245 SLC4A2P04920 1241 aa18.55■□□□□ 0.56
COMMD4-225ENST00000569245 EXOSC9Q06265 439 aaKnown RBP18.55■□□□□ 0.56
COMMD4-225ENST00000569245 RTL5Q5HYW3 569 aaPredicted RBP18.55■□□□□ 0.56
COMMD4-225ENST00000569245 FAM89AQ96GI7 184 aa18.55■□□□□ 0.56
COMMD4-225ENST00000569245 CRAMP1Q96RY5 1269 aa18.55■□□□□ 0.56
COMMD4-225ENST00000569245 NMRK2Q9NPI5 230 aa18.55■□□□□ 0.56
COMMD4-225ENST00000569245 SLX4Q8IY92 1834 aa18.55■□□□□ 0.56
COMMD4-225ENST00000569245 LTBP3Q9NS15 1303 aa18.54■□□□□ 0.56
COMMD4-225ENST00000569245 PPEF1O14829 653 aaPredicted RBP18.54■□□□□ 0.56
COMMD4-225ENST00000569245 FKBP4Q02790 459 aaKnown RBP eCLIP18.54■□□□□ 0.56
COMMD4-225ENST00000569245 KIF3CO14782 793 aa18.53■□□□□ 0.56
COMMD4-225ENST00000569245 TRIM28Q13263 835 aaKnown RBP18.53■□□□□ 0.56
COMMD4-225ENST00000569245 CC2D2BQ6DHV5 1058 aa18.53■□□□□ 0.56
COMMD4-225ENST00000569245 C16orf71Q8IYS4 520 aaPredicted RBP18.53■□□□□ 0.56
COMMD4-225ENST00000569245 SPINK5Q9NQ38 1064 aaPredicted RBP18.53■□□□□ 0.56
COMMD4-225ENST00000569245 MAP3K2Q9Y2U5 619 aa18.53■□□□□ 0.56
COMMD4-225ENST00000569245 TNRC6CQ9HCJ0 1690 aaKnown RBP18.53■□□□□ 0.56
COMMD4-225ENST00000569245 CENPBP07199 599 aaPredicted RBP18.52■□□□□ 0.56
COMMD4-225ENST00000569245 DPY19L2Q6NUT2 758 aa18.52■□□□□ 0.56
COMMD4-225ENST00000569245 KSR2Q6VAB6 950 aa18.52■□□□□ 0.56
COMMD4-225ENST00000569245 DDX46Q7L014 1031 aaKnown RBP18.52■□□□□ 0.56
COMMD4-225ENST00000569245 METTL22Q9BUU2 404 aaPredicted RBP18.52■□□□□ 0.56
COMMD4-225ENST00000569245 RRAGCQ9HB90 399 aa18.52■□□□□ 0.56
COMMD4-225ENST00000569245 ZNF277Q9NRM2 450 aaPredicted RBP18.52■□□□□ 0.56
COMMD4-225ENST00000569245 PI4KAP2A4QPH2 592 aa18.51■□□□□ 0.55
COMMD4-225ENST00000569245 GLTPD2A6NH11 291 aa18.51■□□□□ 0.55
COMMD4-225ENST00000569245 VAMP4O75379 141 aa18.51■□□□□ 0.55
COMMD4-225ENST00000569245 PI4KAP1Q8N8J0 262 aa18.51■□□□□ 0.55
COMMD4-225ENST00000569245 CWC25Q9NXE8 425 aaPredicted RBP18.51■□□□□ 0.55
COMMD4-225ENST00000569245 ABCC4O15439 1325 aa18.5■□□□□ 0.55
COMMD4-225ENST00000569245 IRS4O14654 1257 aaPredicted RBP18.5■□□□□ 0.55
COMMD4-225ENST00000569245 NEXNQ0ZGT2 675 aa18.5■□□□□ 0.55
COMMD4-225ENST00000569245 G2E3Q7L622 706 aa18.5■□□□□ 0.55
COMMD4-225ENST00000569245 ZBTB38Q8NAP3 1195 aaPredicted RBP18.5■□□□□ 0.55
COMMD4-225ENST00000569245 CCDC191Q8NCU4 936 aa18.5■□□□□ 0.55
COMMD4-225ENST00000569245 BBOX1O75936 387 aa18.49■□□□□ 0.55
COMMD4-225ENST00000569245 HSP90B1P14625 803 aaKnown RBP18.49■□□□□ 0.55
COMMD4-225ENST00000569245 GRIPAP1Q4V328 841 aa18.49■□□□□ 0.55
COMMD4-225ENST00000569245 CACNA1SQ13698 1873 aa18.48■□□□□ 0.55
COMMD4-225ENST00000569245 TOMM70O94826 608 aa18.48■□□□□ 0.55
COMMD4-225ENST00000569245 FLIIQ13045 1269 aa18.48■□□□□ 0.55
COMMD4-225ENST00000569245 FKBP5Q13451 457 aaPredicted RBP18.48■□□□□ 0.55
COMMD4-225ENST00000569245 JARID2Q92833 1246 aaPredicted RBP18.48■□□□□ 0.55
COMMD4-225ENST00000569245 PSMD1Q99460 953 aa18.48■□□□□ 0.55
COMMD4-225ENST00000569245 ATP6V0A2Q9Y487 856 aa18.48■□□□□ 0.55
COMMD4-225ENST00000569245 SBF1O95248 1867 aa18.48■□□□□ 0.55
COMMD4-225ENST00000569245 ANKRD36CQ5JPF3 1778 aa18.47■□□□□ 0.55
COMMD4-225ENST00000569245 IARSP41252 1262 aaKnown RBP18.47■□□□□ 0.55
COMMD4-225ENST00000569245 GRAPQ13588 217 aa18.47■□□□□ 0.55
COMMD4-225ENST00000569245 GRAPLQ8TC17 118 aaPredicted RBP18.47■□□□□ 0.55
COMMD4-225ENST00000569245 ARFGEF2Q9Y6D5 1785 aa18.46■□□□□ 0.55
COMMD4-225ENST00000569245 PCCAP05165 728 aaPredicted RBP18.46■□□□□ 0.55
COMMD4-225ENST00000569245 VEGFAP15692 232 aaPredicted RBP18.46■□□□□ 0.55
COMMD4-225ENST00000569245 SF3B3Q15393 1217 aaKnown RBP18.46■□□□□ 0.55
COMMD4-225ENST00000569245 SLC51AQ86UW1 340 aa18.46■□□□□ 0.55
COMMD4-225ENST00000569245 JDP2Q8WYK2 163 aa18.46■□□□□ 0.55
COMMD4-225ENST00000569245 FER1L6Q2WGJ9 1857 aa18.46■□□□□ 0.54
COMMD4-225ENST00000569245 SP8Q8IXZ3 490 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms