RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 PHACTR3Q96KR7 559 aa12.18□□□□□ -0.46
CAPN3-219ENST00000569136 SLC52A2Q9HAB3 445 aa12.18□□□□□ -0.46
CAPN3-219ENST00000569136 LGR6Q9HBX8 967 aa12.18□□□□□ -0.46
CAPN3-219ENST00000569136 ANKRD26Q9UPS8 1709 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 CLCN1P35523 988 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 SLC4A3P48751 1232 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 KCNQ4P56696 695 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 SAMD7Q7Z3H4 446 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 ANKK1Q8NFD2 765 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 WNT2BQ93097 391 aa12.17□□□□□ -0.46
CAPN3-219ENST00000569136 PRKRIP1Q9H875 184 aaPredicted RBP12.17□□□□□ -0.46
CAPN3-219ENST00000569136 RC3H1Q5TC82 1133 aaKnown RBP12.16□□□□□ -0.46
CAPN3-219ENST00000569136 RTF1Q92541 710 aaKnown RBP12.16□□□□□ -0.46
CAPN3-219ENST00000569136 MTFR1LQ9H019 292 aa12.16□□□□□ -0.46
CAPN3-219ENST00000569136 TMEM134Q9H6X4 195 aa12.16□□□□□ -0.46
CAPN3-219ENST00000569136 TEFQ10587 303 aa12.15□□□□□ -0.46
CAPN3-219ENST00000569136 AMHR2Q16671 573 aa12.15□□□□□ -0.46
CAPN3-219ENST00000569136 ZNF827Q17R98 1081 aa12.15□□□□□ -0.46
CAPN3-219ENST00000569136 IL17REQ8NFR9 667 aa12.15□□□□□ -0.46
CAPN3-219ENST00000569136 KCTD12Q96CX2 325 aaKnown RBP12.15□□□□□ -0.46
CAPN3-219ENST00000569136 LRCH3Q96II8 777 aa12.15□□□□□ -0.46
CAPN3-219ENST00000569136 GPCPD1Q9NPB8 672 aa12.15□□□□□ -0.46
CAPN3-219ENST00000569136 TNS1Q9HBL0 1735 aaKnown RBP12.14□□□□□ -0.47
CAPN3-219ENST00000569136 COL3A1P02461 1466 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-219ENST00000569136 PTCD1O75127 700 aaKnown RBP12.13□□□□□ -0.47
CAPN3-219ENST00000569136 ZBTB7AO95365 584 aa12.13□□□□□ -0.47
CAPN3-219ENST00000569136 PARP9Q8IXQ6 854 aa12.13□□□□□ -0.47
CAPN3-219ENST00000569136 TEX13AQ9BXU3 409 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-219ENST00000569136 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-219ENST00000569136 PPP1R1BQ9UD71 204 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-219ENST00000569136 DAXXQ9UER7 740 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-219ENST00000569136 WNK3Q9BYP7 1800 aa12.13□□□□□ -0.47
CAPN3-219ENST00000569136 RGPD2P0DJD1 1756 aa12.13□□□□□ -0.47
CAPN3-219ENST00000569136 DDX11L8A8MPP1 907 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 SSFA2P28290 1259 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 ITPK1Q13572 414 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 WDR43Q15061 677 aaKnown RBP eCLIP12.12□□□□□ -0.47
CAPN3-219ENST00000569136 COL23A1Q86Y22 540 aaPredicted RBP12.12□□□□□ -0.47
CAPN3-219ENST00000569136 TTC5Q8N0Z6 440 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 PLEKHF1Q96S99 279 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 PDGFDQ9GZP0 370 aaPredicted RBP12.12□□□□□ -0.47
CAPN3-219ENST00000569136 GPBP1L1Q9HC44 474 aaPredicted RBP12.12□□□□□ -0.47
CAPN3-219ENST00000569136 MAP3K5Q99683 1374 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 NHSQ6T4R5 1651 aa12.12□□□□□ -0.47
CAPN3-219ENST00000569136 PNPLA7Q6ZV29 1317 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 MAPK8IP3Q9UPT6 1336 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 KDM6AO15550 1401 aaPredicted RBP12.11□□□□□ -0.47
CAPN3-219ENST00000569136 SBF2Q86WG5 1849 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 POLD1P28340 1107 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 BCAMP50895 628 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 TRAPPC3LQ5T215 181 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 GIGYF2Q6Y7W6 1299 aaKnown RBP12.11□□□□□ -0.47
CAPN3-219ENST00000569136 RDH13Q8NBN7 331 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 LINC00116Q8NCU8 138 aa12.11□□□□□ -0.47
CAPN3-219ENST00000569136 RTCBQ9Y3I0 505 aaKnown RBP12.11□□□□□ -0.47
CAPN3-219ENST00000569136 ANP32CO43423 234 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 RPS6KA4O75676 772 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 STARD3NLO95772 234 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 SLC39A6Q13433 755 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 TAF7Q15545 349 aaPredicted RBP12.1□□□□□ -0.47
CAPN3-219ENST00000569136 NFE2L2Q16236 605 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 ZNF790Q6PG37 636 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 SPNS2Q8IVW8 549 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 SLF2Q8IX21 1173 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 PNISRQ8TF01 805 aaKnown RBP12.1□□□□□ -0.47
CAPN3-219ENST00000569136 SLC4A9Q96Q91 983 aa12.1□□□□□ -0.47
CAPN3-219ENST00000569136 REPIN1Q9BWE0 567 aaKnown RBP12.1□□□□□ -0.47
CAPN3-219ENST00000569136 BTBD11A6QL63 1104 aa12.09□□□□□ -0.47
CAPN3-219ENST00000569136 RGPD3A6NKT7 1758 aaPredicted RBP12.09□□□□□ -0.47
CAPN3-219ENST00000569136 RGPD4Q7Z3J3 1758 aa12.09□□□□□ -0.47
CAPN3-219ENST00000569136 CNTNAP4Q9C0A0 1308 aa12.09□□□□□ -0.47
CAPN3-219ENST00000569136 PKD1L3Q7Z443 1732 aa12.08□□□□□ -0.47
CAPN3-219ENST00000569136 CEMIPQ8WUJ3 1361 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 BRPF1P55201 1214 aaPredicted RBP12.08□□□□□ -0.48
CAPN3-219ENST00000569136 LMOD3Q0VAK6 560 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 SULF1Q8IWU6 871 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 RUNDC1Q96C34 613 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 FMNL2Q96PY5 1086 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 ARXQ96QS3 562 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 ADAMTS8Q9UP79 889 aa12.08□□□□□ -0.48
CAPN3-219ENST00000569136 RFC4P35249 363 aa12.07□□□□□ -0.48
CAPN3-219ENST00000569136 RIPK4P57078 832 aa12.07□□□□□ -0.48
CAPN3-219ENST00000569136 MCM10Q7L590 875 aa12.07□□□□□ -0.48
CAPN3-219ENST00000569136 NLGN1Q8N2Q7 840 aa12.07□□□□□ -0.48
CAPN3-219ENST00000569136 KDM4CQ9H3R0 1056 aa12.07□□□□□ -0.48
CAPN3-219ENST00000569136 HPS5Q9UPZ3 1129 aa12.07□□□□□ -0.48
CAPN3-219ENST00000569136 SOWAHBA6NEL2 793 aa12.06□□□□□ -0.48
CAPN3-219ENST00000569136 CYP19A1P11511 503 aaPredicted RBP12.06□□□□□ -0.48
CAPN3-219ENST00000569136 SSTR3P32745 418 aaPredicted RBP12.06□□□□□ -0.48
CAPN3-219ENST00000569136 CRKLP46109 303 aaKnown RBP12.06□□□□□ -0.48
CAPN3-219ENST00000569136 DNAJC10Q8IXB1 793 aa12.06□□□□□ -0.48
CAPN3-219ENST00000569136 ZNF496Q96IT1 587 aaPredicted RBP12.06□□□□□ -0.48
CAPN3-219ENST00000569136 FAM217BQ9NTX9 383 aaPredicted RBP12.06□□□□□ -0.48
CAPN3-219ENST00000569136 BABAM1Q9NWV8 329 aa12.06□□□□□ -0.48
CAPN3-219ENST00000569136 BTAF1O14981 1849 aa12.06□□□□□ -0.48
CAPN3-219ENST00000569136 SNRPA1P09661 255 aaKnown RBP12.05□□□□□ -0.48
CAPN3-219ENST00000569136 TMPOP42166 694 aaKnown RBP12.05□□□□□ -0.48
CAPN3-219ENST00000569136 PTPN5P54829 565 aa12.05□□□□□ -0.48
CAPN3-219ENST00000569136 PPP4CP60510 307 aa12.05□□□□□ -0.48
CAPN3-219ENST00000569136 INTS5Q6P9B9 1019 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms