RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TMEM131LA2VDJ0 1609 aa17.15■□□□□ 0.34
VPS35-210ENST00000568784 ZNF771Q7L3S4 317 aaPredicted RBP17.15■□□□□ 0.34
VPS35-210ENST00000568784 TLR7Q9NYK1 1049 aaKnown RBP17.15■□□□□ 0.34
VPS35-210ENST00000568784 CLIP2Q9UDT6 1046 aa17.15■□□□□ 0.34
VPS35-210ENST00000568784 AP5Z1O43299 807 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 NEXNQ0ZGT2 675 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 ESCO1Q5FWF5 840 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 SSH2Q76I76 1423 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 CCT2P78371 535 aaKnown RBP17.14■□□□□ 0.33
VPS35-210ENST00000568784 BEND3Q5T5X7 828 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 CCDC129Q6ZRS4 1044 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 ARHGEF10O15013 1369 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 SETD1BQ9UPS6 1966 aaKnown RBP17.14■□□□□ 0.33
VPS35-210ENST00000568784 USP6P35125 1406 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 SLC39A6Q13433 755 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 ERC1Q8IUD2 1116 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 DBF4Q9UBU7 674 aaPredicted RBP17.14■□□□□ 0.33
VPS35-210ENST00000568784 IGSF1Q8N6C5 1336 aa17.14■□□□□ 0.33
VPS35-210ENST00000568784 A0A0D9SFI3 127 aa17.13■□□□□ 0.33
VPS35-210ENST00000568784 COL9A3Q14050 684 aaPredicted RBP17.13■□□□□ 0.33
VPS35-210ENST00000568784 SF3A1Q15459 793 aaKnown RBP17.13■□□□□ 0.33
VPS35-210ENST00000568784 CBX8Q9HC52 389 aa17.13■□□□□ 0.33
VPS35-210ENST00000568784 SLC27A2O14975 620 aa17.13■□□□□ 0.33
VPS35-210ENST00000568784 HTATSF1O43719 755 aaKnown RBP17.13■□□□□ 0.33
VPS35-210ENST00000568784 EIF4A1P60842 406 aaKnown RBP17.13■□□□□ 0.33
VPS35-210ENST00000568784 NBPF6Q5VWK0 638 aa17.13■□□□□ 0.33
VPS35-210ENST00000568784 BRF1Q92994 677 aa17.13■□□□□ 0.33
VPS35-210ENST00000568784 EAF2Q96CJ1 260 aaPredicted RBP17.13■□□□□ 0.33
VPS35-210ENST00000568784 NBPF4Q96M43 638 aa17.13■□□□□ 0.33
VPS35-210ENST00000568784 DDX58O95786 925 aaKnown RBP17.12■□□□□ 0.33
VPS35-210ENST00000568784 CCDC112Q8NEF3 446 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 TNRQ92752 1358 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 BICC1Q9H694 974 aaKnown RBP17.12■□□□□ 0.33
VPS35-210ENST00000568784 TCHHQ07283 1943 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 SCAND2PQ9GZW5 306 aaPredicted RBP17.12■□□□□ 0.33
VPS35-210ENST00000568784 TAF6LQ9Y6J9 622 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 DLG5Q8TDM6 1919 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 AOX1Q06278 1338 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 TTC21AQ8NDW8 1320 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 A0A0U1RQG5 324 aaPredicted RBP17.12■□□□□ 0.33
VPS35-210ENST00000568784 TPM3P06753 285 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 CCDC73Q6ZRK6 1079 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 SDF4Q9BRK5 362 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 HDAC5Q9UQL6 1122 aa17.12■□□□□ 0.33
VPS35-210ENST00000568784 REREQ9P2R6 1566 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 ME1P48163 572 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 PLEKHO1Q53GL0 409 aaPredicted RBP17.11■□□□□ 0.33
VPS35-210ENST00000568784 DDX46Q7L014 1031 aaKnown RBP17.11■□□□□ 0.33
VPS35-210ENST00000568784 KCNF1Q9H3M0 494 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 KIAA1524Q8TCG1 905 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 CDC42BPGQ6DT37 1551 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 TTC41PQ6P2S7 1318 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 NR1I2O75469 434 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 NAA30Q147X3 362 aaPredicted RBP17.11■□□□□ 0.33
VPS35-210ENST00000568784 RAB11FIP4Q86YS3 637 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 SUCLG2Q96I99 432 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 CHMP4AQ9BY43 222 aa17.11■□□□□ 0.33
VPS35-210ENST00000568784 CHST3Q7LGC8 479 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 MYD88Q99836 296 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 ZSWIM6Q9HCJ5 1215 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 POLA2Q14181 598 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 CHGBP05060 677 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 CSB-PGBD3P0DP91 1061 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 ANKRD1Q15327 319 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 ZNF710Q8N1W2 664 aa17.1■□□□□ 0.33
VPS35-210ENST00000568784 PREX1Q8TCU6 1659 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 ATP5J2-PTCD1G3V325 749 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 PTCD1O75127 700 aaKnown RBP17.09■□□□□ 0.33
VPS35-210ENST00000568784 ATP2B3Q16720 1220 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 SYTL4Q96C24 671 aaPredicted RBP17.09■□□□□ 0.33
VPS35-210ENST00000568784 MRVI1Q9Y6F6 885 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 HIP1O00291 1037 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 KINO60870 393 aaKnown RBP17.09■□□□□ 0.33
VPS35-210ENST00000568784 SEC62Q99442 399 aaKnown RBP17.09■□□□□ 0.33
VPS35-210ENST00000568784 ANKRD26Q9UPS8 1709 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 GRM8O00222 908 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 ZNF589Q86UQ0 364 aaPredicted RBP17.09■□□□□ 0.33
VPS35-210ENST00000568784 TMEM87AQ8NBN3 555 aa17.09■□□□□ 0.33
VPS35-210ENST00000568784 LEO1Q8WVC0 666 aaPredicted RBP17.09■□□□□ 0.33
VPS35-210ENST00000568784 FTOQ9C0B1 505 aaKnown RBP eCLIP17.09■□□□□ 0.33
VPS35-210ENST00000568784 Q6ZUG5 572 aa17.08■□□□□ 0.33
VPS35-210ENST00000568784 GORABQ5T7V8 394 aa17.08■□□□□ 0.32
VPS35-210ENST00000568784 SMAP1Q8IYB5 467 aaPredicted RBP17.08■□□□□ 0.32
VPS35-210ENST00000568784 KCNA6P17658 529 aa17.07■□□□□ 0.32
VPS35-210ENST00000568784 KSR2Q6VAB6 950 aa17.07■□□□□ 0.32
VPS35-210ENST00000568784 DDX19AQ9NUU7 478 aaKnown RBP17.07■□□□□ 0.32
VPS35-210ENST00000568784 ISM2Q6H9L7 571 aa17.07■□□□□ 0.32
VPS35-210ENST00000568784 NLRP2Q9NX02 1062 aa17.07■□□□□ 0.32
VPS35-210ENST00000568784 BIN1O00499 593 aa17.07■□□□□ 0.32
VPS35-210ENST00000568784 NEK1Q96PY6 1258 aa17.07■□□□□ 0.32
VPS35-210ENST00000568784 SMC2O95347 1197 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 ZC3H6P61129 1189 aaKnown RBP17.06■□□□□ 0.32
VPS35-210ENST00000568784 USP16Q9Y5T5 823 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 NPHP3Q7Z494 1330 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 ARID5BQ14865 1188 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 TMEM2Q9UHN6 1383 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 NECTIN1Q15223 517 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 UBE3BQ7Z3V4 1068 aa17.06■□□□□ 0.32
VPS35-210ENST00000568784 RPS6KB1P23443 525 aa17.05■□□□□ 0.32
VPS35-210ENST00000568784 CCAR1Q8IX12 1150 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms