RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 TRMT112Q9UI30 125 aaKnown RBP13.26□□□□□ -0.29
CDH3-207ENST00000568292 NFKBIEO00221 500 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 HOXA10P31260 410 aaPredicted RBP13.25□□□□□ -0.29
CDH3-207ENST00000568292 GOLGA2Q08379 1002 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 TWISTNBQ3B726 338 aaPredicted RBP13.25□□□□□ -0.29
CDH3-207ENST00000568292 CCDC93Q567U6 631 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 RTKN2Q8IZC4 609 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 CRAMP1Q96RY5 1269 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 PHAXQ9H814 394 aaKnown RBP13.25□□□□□ -0.29
CDH3-207ENST00000568292 ANKRD31Q8N7Z5 1873 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 NUP98P52948 1817 aa13.25□□□□□ -0.29
CDH3-207ENST00000568292 KDM2BQ8NHM5 1336 aa13.24□□□□□ -0.29
CDH3-207ENST00000568292 LTBP3Q9NS15 1303 aa13.24□□□□□ -0.29
CDH3-207ENST00000568292 DDX58O95786 925 aaKnown RBP13.24□□□□□ -0.29
CDH3-207ENST00000568292 TRIM28Q13263 835 aaKnown RBP13.24□□□□□ -0.29
CDH3-207ENST00000568292 CC2D2BQ6DHV5 1058 aa13.24□□□□□ -0.29
CDH3-207ENST00000568292 ISCA1Q9BUE6 129 aa13.24□□□□□ -0.29
CDH3-207ENST00000568292 STK31Q9BXU1 1019 aa13.24□□□□□ -0.29
CDH3-207ENST00000568292 TAOK3Q9H2K8 898 aa13.24□□□□□ -0.29
CDH3-207ENST00000568292 ABCC12Q96J65 1359 aa13.23□□□□□ -0.29
CDH3-207ENST00000568292 DLEC1Q9Y238 1755 aa13.23□□□□□ -0.29
CDH3-207ENST00000568292 ZC3H4Q9UPT8 1303 aaKnown RBP13.23□□□□□ -0.29
CDH3-207ENST00000568292 ATP5J2-PTCD1G3V325 749 aa13.23□□□□□ -0.29
CDH3-207ENST00000568292 PRELPP51888 382 aa13.23□□□□□ -0.29
CDH3-207ENST00000568292 GRIPAP1Q4V328 841 aa13.23□□□□□ -0.29
CDH3-207ENST00000568292 DPY19L2Q6NUT2 758 aa13.23□□□□□ -0.29
CDH3-207ENST00000568292 TMX4Q9H1E5 349 aaPredicted RBP13.23□□□□□ -0.29
CDH3-207ENST00000568292 RIC1Q4ADV7 1423 aa13.22□□□□□ -0.29
CDH3-207ENST00000568292 SH3TC1Q8TE82 1336 aa13.22□□□□□ -0.29
CDH3-207ENST00000568292 GLTPD2A6NH11 291 aa13.22□□□□□ -0.29
CDH3-207ENST00000568292 KIF3CO14782 793 aa13.22□□□□□ -0.29
CDH3-207ENST00000568292 HCLS1P14317 486 aaPredicted RBP13.22□□□□□ -0.29
CDH3-207ENST00000568292 FKBP4Q02790 459 aaKnown RBP eCLIP13.22□□□□□ -0.29
CDH3-207ENST00000568292 SYNE4Q8N205 404 aa13.22□□□□□ -0.29
CDH3-207ENST00000568292 MYH16Q9H6N6 1097 aa13.22□□□□□ -0.29
CDH3-207ENST00000568292 TCERG1O14776 1098 aaKnown RBP13.21□□□□□ -0.29
CDH3-207ENST00000568292 BBOX1O75936 387 aa13.21□□□□□ -0.29
CDH3-207ENST00000568292 SLC4A2P04920 1241 aa13.21□□□□□ -0.29
CDH3-207ENST00000568292 FAM89AQ96GI7 184 aa13.21□□□□□ -0.29
CDH3-207ENST00000568292 METTL22Q9BUU2 404 aaPredicted RBP13.21□□□□□ -0.29
CDH3-207ENST00000568292 RRAGCQ9HB90 399 aa13.21□□□□□ -0.29
CDH3-207ENST00000568292 FANCIQ9NVI1 1328 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 VAMP4O75379 141 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 HSP90B1P14625 803 aaKnown RBP13.2□□□□□ -0.3
CDH3-207ENST00000568292 EXOSC9Q06265 439 aaKnown RBP13.2□□□□□ -0.3
CDH3-207ENST00000568292 KSR2Q6VAB6 950 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 C3orf67Q6ZVT6 689 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 DDX46Q7L014 1031 aaKnown RBP13.2□□□□□ -0.3
CDH3-207ENST00000568292 C16orf71Q8IYS4 520 aaPredicted RBP13.2□□□□□ -0.3
CDH3-207ENST00000568292 CCDC191Q8NCU4 936 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 MYD88Q99836 296 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 NMRK2Q9NPI5 230 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 SLX4Q8IY92 1834 aa13.2□□□□□ -0.3
CDH3-207ENST00000568292 CCER2I3L3R5 266 aa13.19□□□□□ -0.3
CDH3-207ENST00000568292 PPEF1O14829 653 aaPredicted RBP13.19□□□□□ -0.3
CDH3-207ENST00000568292 TOMM70O94826 608 aa13.19□□□□□ -0.3
CDH3-207ENST00000568292 OLFM4Q6UX06 510 aa13.19□□□□□ -0.3
CDH3-207ENST00000568292 ZBTB38Q8NAP3 1195 aaPredicted RBP13.19□□□□□ -0.3
CDH3-207ENST00000568292 ZNF428Q96B54 188 aa13.19□□□□□ -0.3
CDH3-207ENST00000568292 MAP3K2Q9Y2U5 619 aa13.19□□□□□ -0.3
CDH3-207ENST00000568292 COL11A2P13942 1736 aaPredicted RBP13.19□□□□□ -0.3
CDH3-207ENST00000568292 PI4KAP2A4QPH2 592 aa13.18□□□□□ -0.3
CDH3-207ENST00000568292 IRS4O14654 1257 aaPredicted RBP13.18□□□□□ -0.3
CDH3-207ENST00000568292 VEGFAP15692 232 aaPredicted RBP13.18□□□□□ -0.3
CDH3-207ENST00000568292 NEXNQ0ZGT2 675 aa13.18□□□□□ -0.3
CDH3-207ENST00000568292 SP8Q8IXZ3 490 aa13.18□□□□□ -0.3
CDH3-207ENST00000568292 PI4KAP1Q8N8J0 262 aa13.18□□□□□ -0.3
CDH3-207ENST00000568292 PSMD1Q99460 953 aa13.18□□□□□ -0.3
CDH3-207ENST00000568292 SPINK5Q9NQ38 1064 aaPredicted RBP13.18□□□□□ -0.3
CDH3-207ENST00000568292 ZNF277Q9NRM2 450 aaPredicted RBP13.18□□□□□ -0.3
CDH3-207ENST00000568292 CWC25Q9NXE8 425 aaPredicted RBP13.18□□□□□ -0.3
CDH3-207ENST00000568292 PCCAP05165 728 aaPredicted RBP13.17□□□□□ -0.3
CDH3-207ENST00000568292 IARSP41252 1262 aaKnown RBP13.17□□□□□ -0.3
CDH3-207ENST00000568292 SF3B3Q15393 1217 aaKnown RBP13.17□□□□□ -0.3
CDH3-207ENST00000568292 RTL5Q5HYW3 569 aaPredicted RBP13.17□□□□□ -0.3
CDH3-207ENST00000568292 G2E3Q7L622 706 aa13.17□□□□□ -0.3
CDH3-207ENST00000568292 ATP6V0A2Q9Y487 856 aa13.17□□□□□ -0.3
CDH3-207ENST00000568292 SBF1O95248 1867 aa13.16□□□□□ -0.3
CDH3-207ENST00000568292 ABCC4O15439 1325 aa13.16□□□□□ -0.3
CDH3-207ENST00000568292 GRAPQ13588 217 aa13.16□□□□□ -0.3
CDH3-207ENST00000568292 TMC4Q7Z404 712 aa13.16□□□□□ -0.3
CDH3-207ENST00000568292 GRAPLQ8TC17 118 aaPredicted RBP13.16□□□□□ -0.3
CDH3-207ENST00000568292 JDP2Q8WYK2 163 aa13.16□□□□□ -0.3
CDH3-207ENST00000568292 VPS33BQ9H267 617 aa13.16□□□□□ -0.3
CDH3-207ENST00000568292 FLIIQ13045 1269 aa13.15□□□□□ -0.3
CDH3-207ENST00000568292 MPNDQ8N594 471 aa13.15□□□□□ -0.3
CDH3-207ENST00000568292 SUPT20HQ8NEM7 779 aa13.15□□□□□ -0.3
CDH3-207ENST00000568292 RBM46Q8TBY0 533 aaKnown RBP13.15□□□□□ -0.3
CDH3-207ENST00000568292 ZNF521Q96K83 1311 aa13.14□□□□□ -0.31
CDH3-207ENST00000568292 FER1L6Q2WGJ9 1857 aa13.14□□□□□ -0.31
CDH3-207ENST00000568292 PDE8AO60658 829 aa13.14□□□□□ -0.31
CDH3-207ENST00000568292 DDNO94850 711 aaPredicted RBP13.14□□□□□ -0.31
CDH3-207ENST00000568292 IGKV5-2P06315 115 aa13.14□□□□□ -0.31
CDH3-207ENST00000568292 FKBP5Q13451 457 aaPredicted RBP13.14□□□□□ -0.31
CDH3-207ENST00000568292 POTEDQ86YR6 584 aa13.14□□□□□ -0.31
CDH3-207ENST00000568292 TNRC6CQ9HCJ0 1690 aaKnown RBP13.14□□□□□ -0.31
CDH3-207ENST00000568292 ARFGEF2Q9Y6D5 1785 aa13.14□□□□□ -0.31
CDH3-207ENST00000568292 ANKRD36CQ5JPF3 1778 aa13.13□□□□□ -0.31
CDH3-207ENST00000568292 E9PSI1 815 aa13.13□□□□□ -0.31
CDH3-207ENST00000568292 HSPA6P17066 643 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms