RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PCSK7Q16549 785 aa6□□□□□ -1.45
VPS35-207ENST00000568191 SWI5Q1ZZU3 235 aa6□□□□□ -1.45
VPS35-207ENST00000568191 FCHSD1Q86WN1 690 aa6□□□□□ -1.45
VPS35-207ENST00000568191 ZNF280CQ8ND82 737 aa6□□□□□ -1.45
VPS35-207ENST00000568191 GTF3C3Q9Y5Q9 886 aa6□□□□□ -1.45
VPS35-207ENST00000568191 ADARB2-AS1A8MUL3 147 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 WEE1P30291 646 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 DGKGP49619 791 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 SUZ12Q15022 739 aaKnown RBP5.99□□□□□ -1.45
VPS35-207ENST00000568191 LINC00114Q6XXX2 140 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 TNFRSF25Q93038 417 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 BHMTQ93088 406 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 KLF15Q9UIH9 416 aa5.99□□□□□ -1.45
VPS35-207ENST00000568191 ACIN1Q9UKV3 1341 aaKnown RBP5.99□□□□□ -1.45
VPS35-207ENST00000568191 CCINQ13939 588 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 ELOAQ14241 798 aaKnown RBP5.98□□□□□ -1.45
VPS35-207ENST00000568191 C11orf91Q3C1V1 193 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 PLA2G4EQ3MJ16 856 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 PRRT3Q5FWE3 981 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 ARXQ96QS3 562 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 SLC30A3Q99726 388 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 C11orf16Q9NQ32 467 aa5.98□□□□□ -1.45
VPS35-207ENST00000568191 LGR5O75473 907 aa5.97□□□□□ -1.45
VPS35-207ENST00000568191 ADH7P40394 386 aa5.97□□□□□ -1.45
VPS35-207ENST00000568191 TBC1D8BQ0IIM8 1120 aa5.97□□□□□ -1.45
VPS35-207ENST00000568191 DGKZQ13574 1117 aa5.97□□□□□ -1.45
VPS35-207ENST00000568191 UBE2OQ9C0C9 1292 aaKnown RBP5.97□□□□□ -1.45
VPS35-207ENST00000568191 IGFLR1Q9H665 355 aa5.97□□□□□ -1.45
VPS35-207ENST00000568191 ARSDP51689 593 aa5.96□□□□□ -1.46
VPS35-207ENST00000568191 MYO19Q96H55 970 aa5.96□□□□□ -1.46
VPS35-207ENST00000568191 PLVAPQ9BX97 442 aa5.96□□□□□ -1.46
VPS35-207ENST00000568191 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.96□□□□□ -1.46
VPS35-207ENST00000568191 M0R082 166 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 LILRB5O75023 590 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 ATG7O95352 703 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 APBA3O96018 575 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 IDH3AP50213 366 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 TRIM28Q13263 835 aaKnown RBP5.95□□□□□ -1.46
VPS35-207ENST00000568191 RAB44Q7Z6P3 723 aaPredicted RBP5.95□□□□□ -1.46
VPS35-207ENST00000568191 ZNF417Q8TAU3 575 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 PBXIP1Q96AQ6 731 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 IFT43Q96FT9 208 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 ZNF587Q96SQ5 575 aaPredicted RBP5.95□□□□□ -1.46
VPS35-207ENST00000568191 FAM13BQ9NYF5 915 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 KLK14Q9P0G3 267 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 HCN2Q9UL51 889 aa5.95□□□□□ -1.46
VPS35-207ENST00000568191 PTCD1O75127 700 aaKnown RBP5.94□□□□□ -1.46
VPS35-207ENST00000568191 MICAL2O94851 1124 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 SPATA31C1P0DKV0 1188 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 PRIMPOLQ96LW4 560 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 SPOCK3Q9BQ16 436 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 GSX2Q9BZM3 304 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 SUV39H2Q9H5I1 410 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 PRDM6Q9NQX0 595 aa5.94□□□□□ -1.46
VPS35-207ENST00000568191 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.93□□□□□ -1.46
VPS35-207ENST00000568191 KRBA1A5PL33 1030 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 PRMT3O60678 531 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 HOXB4P17483 251 aaPredicted RBP5.93□□□□□ -1.46
VPS35-207ENST00000568191 NFKB1P19838 968 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 BRD2P25440 801 aaKnown RBP5.93□□□□□ -1.46
VPS35-207ENST00000568191 COL8A1P27658 744 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 INPP5BP32019 993 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 MICALL1Q8N3F8 863 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 COL26A1Q96A83 441 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 NACC1Q96RE7 527 aa5.93□□□□□ -1.46
VPS35-207ENST00000568191 QTRT2Q9H974 415 aaKnown RBP5.93□□□□□ -1.46
VPS35-207ENST00000568191 MAP3K6O95382 1288 aa5.92□□□□□ -1.46
VPS35-207ENST00000568191 TRAPPC3LQ5T215 181 aa5.92□□□□□ -1.46
VPS35-207ENST00000568191 C16orf46Q6P387 395 aa5.92□□□□□ -1.46
VPS35-207ENST00000568191 DNAJB12Q9NXW2 375 aaKnown RBP5.92□□□□□ -1.46
VPS35-207ENST00000568191 DMGDHQ9UI17 866 aaKnown RBP5.92□□□□□ -1.46
VPS35-207ENST00000568191 SLC6A14Q9UN76 642 aa5.92□□□□□ -1.46
VPS35-207ENST00000568191 RGS9O75916 674 aaPredicted RBP5.91□□□□□ -1.46
VPS35-207ENST00000568191 RARAP10276 462 aa5.91□□□□□ -1.46
VPS35-207ENST00000568191 RAC1P63000 192 aa5.91□□□□□ -1.46
VPS35-207ENST00000568191 FKBP5Q13451 457 aaPredicted RBP5.91□□□□□ -1.46
VPS35-207ENST00000568191 ERICH6Q7L0X2 663 aa5.91□□□□□ -1.46
VPS35-207ENST00000568191 TREML1Q86YW5 311 aa5.91□□□□□ -1.46
VPS35-207ENST00000568191 CMTR1Q8N1G2 835 aaKnown RBP5.91□□□□□ -1.46
VPS35-207ENST00000568191 MDFIQ99750 246 aa5.91□□□□□ -1.46
VPS35-207ENST00000568191 JPH1Q9HDC5 661 aaPredicted RBP5.91□□□□□ -1.46
VPS35-207ENST00000568191 BCS1LQ9Y276 419 aa5.91□□□□□ -1.46
VPS35-207ENST00000568191 C1QTNF9BB2RNN3 333 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 PPP1R15AO75807 674 aaPredicted RBP5.9□□□□□ -1.46
VPS35-207ENST00000568191 ALBP02768 609 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 KRT25Q7Z3Z0 450 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 FAM35AQ86V20 835 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 STK32AQ8WU08 396 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 PIK3R5Q8WYR1 880 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 TRIM11Q96F44 468 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 RBSNQ9H1K0 784 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 CXXC1Q9P0U4 656 aaPredicted RBP5.9□□□□□ -1.46
VPS35-207ENST00000568191 ZMIZ1Q9ULJ6 1067 aa5.9□□□□□ -1.46
VPS35-207ENST00000568191 FNDC3AQ9Y2H6 1198 aaKnown RBP5.9□□□□□ -1.46
VPS35-207ENST00000568191 RTCBQ9Y3I0 505 aaKnown RBP5.9□□□□□ -1.46
VPS35-207ENST00000568191 XYLBO75191 536 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 PSAPP07602 524 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 SRPK2P78362 688 aaKnown RBP5.89□□□□□ -1.47
VPS35-207ENST00000568191 COX20Q5RI15 118 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 PSAPL1Q6NUJ1 521 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms