RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 H0YIN7 160 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 SRGNP10124 158 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 FLIIQ13045 1269 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 C3orf67Q6ZVT6 689 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 PDZRN3Q9UPQ7 1066 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 BCS1LQ9Y276 419 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 RNF123Q5XPI4 1314 aa12.59□□□□□ -0.39
CLK3-220ENST00000567992 ATP5J2-PTCD1G3V325 749 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 NPHP1O15259 732 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 GRIN3BO60391 1043 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 HNRNPUQ00839 825 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLK3-220ENST00000567992 TRIM28Q13263 835 aaKnown RBP12.58□□□□□ -0.4
CLK3-220ENST00000567992 CRY2Q49AN0 593 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 DALRD3Q5D0E6 543 aaKnown RBP12.58□□□□□ -0.4
CLK3-220ENST00000567992 KSR2Q6VAB6 950 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 PPP1R42Q7Z4L9 355 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 RIC3Q7Z5B4 369 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 UTP14AQ9BVJ6 771 aaKnown RBP12.58□□□□□ -0.4
CLK3-220ENST00000567992 MAP3K2Q9Y2U5 619 aa12.58□□□□□ -0.4
CLK3-220ENST00000567992 FER1L6Q2WGJ9 1857 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 PI4KAP2A4QPH2 592 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 DDX58O95786 925 aaKnown RBP12.57□□□□□ -0.4
CLK3-220ENST00000567992 SLC10A5Q5PT55 438 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 STYK1Q6J9G0 422 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 SYNE4Q8N205 404 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 PI4KAP1Q8N8J0 262 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 ZNF428Q96B54 188 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 MYD88Q99836 296 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 METTL22Q9BUU2 404 aaPredicted RBP12.57□□□□□ -0.4
CLK3-220ENST00000567992 COL4A1P02462 1669 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 SBF1O95248 1867 aa12.57□□□□□ -0.4
CLK3-220ENST00000567992 IGKV5-2P06315 115 aa12.56□□□□□ -0.4
CLK3-220ENST00000567992 TTLL6Q8N841 843 aa12.56□□□□□ -0.4
CLK3-220ENST00000567992 MASTLQ96GX5 879 aa12.56□□□□□ -0.4
CLK3-220ENST00000567992 ZBED9Q6R2W3 1325 aa12.56□□□□□ -0.4
CLK3-220ENST00000567992 SH3TC1Q8TE82 1336 aa12.56□□□□□ -0.4
CLK3-220ENST00000567992 SNED1Q8TER0 1413 aa12.55□□□□□ -0.4
CLK3-220ENST00000567992 NPR1P16066 1061 aa12.55□□□□□ -0.4
CLK3-220ENST00000567992 GTF2E1P29083 439 aaPredicted RBP12.55□□□□□ -0.4
CLK3-220ENST00000567992 FKBP5Q13451 457 aaPredicted RBP12.55□□□□□ -0.4
CLK3-220ENST00000567992 MRPL50Q8N5N7 158 aaKnown RBP12.55□□□□□ -0.4
CLK3-220ENST00000567992 SSH1Q8WYL5 1049 aa12.55□□□□□ -0.4
CLK3-220ENST00000567992 ZNF622Q969S3 477 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-220ENST00000567992 TRMT112Q9UI30 125 aaKnown RBP12.55□□□□□ -0.4
CLK3-220ENST00000567992 TAF1P21675 1872 aa12.55□□□□□ -0.4
CLK3-220ENST00000567992 HCLS1P14317 486 aaPredicted RBP12.54□□□□□ -0.4
CLK3-220ENST00000567992 HOXA10P31260 410 aaPredicted RBP12.54□□□□□ -0.4
CLK3-220ENST00000567992 PRPF40BQ6NWY9 871 aaKnown RBP12.54□□□□□ -0.4
CLK3-220ENST00000567992 CCDC191Q8NCU4 936 aa12.54□□□□□ -0.4
CLK3-220ENST00000567992 CNKSR1Q969H4 720 aa12.54□□□□□ -0.4
CLK3-220ENST00000567992 FAM89AQ96GI7 184 aa12.54□□□□□ -0.4
CLK3-220ENST00000567992 MYH3P11055 1940 aa12.54□□□□□ -0.4
CLK3-220ENST00000567992 LRRC37AA6NMS7 1700 aa12.54□□□□□ -0.4
CLK3-220ENST00000567992 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
CLK3-220ENST00000567992 CT47B1P0C2W7 299 aaPredicted RBP12.53□□□□□ -0.4
CLK3-220ENST00000567992 CWF19L2Q2TBE0 894 aaKnown RBP12.53□□□□□ -0.4
CLK3-220ENST00000567992 SLC51AQ86UW1 340 aa12.53□□□□□ -0.4
CLK3-220ENST00000567992 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
CLK3-220ENST00000567992 DNAAF4Q8WXU2 420 aa12.53□□□□□ -0.4
CLK3-220ENST00000567992 CWC25Q9NXE8 425 aaPredicted RBP12.53□□□□□ -0.4
CLK3-220ENST00000567992 TIAM2Q8IVF5 1701 aa12.53□□□□□ -0.4
CLK3-220ENST00000567992 F6X3S4 739 aa12.52□□□□□ -0.41
CLK3-220ENST00000567992 PCCAP05165 728 aaPredicted RBP12.52□□□□□ -0.41
CLK3-220ENST00000567992 PRELPP51888 382 aa12.52□□□□□ -0.41
CLK3-220ENST00000567992 ALDH1L2Q3SY69 923 aa12.52□□□□□ -0.41
CLK3-220ENST00000567992 ZBTB38Q8NAP3 1195 aaPredicted RBP12.52□□□□□ -0.41
CLK3-220ENST00000567992 NLRP3Q96P20 1036 aa12.52□□□□□ -0.41
CLK3-220ENST00000567992 CCDC88AQ3V6T2 1871 aa12.52□□□□□ -0.41
CLK3-220ENST00000567992 DICER1Q9UPY3 1922 aaKnown RBP12.51□□□□□ -0.41
CLK3-220ENST00000567992 NFKBIEO00221 500 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 IRS4O14654 1257 aaPredicted RBP12.51□□□□□ -0.41
CLK3-220ENST00000567992 C21orf2O43822 256 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 YY1P25490 414 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 RTL5Q5HYW3 569 aaPredicted RBP12.51□□□□□ -0.41
CLK3-220ENST00000567992 BEND3Q5T5X7 828 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 OLFM4Q6UX06 510 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 ARHGAP27Q6ZUM4 889 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 BCL2L13Q9BXK5 485 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 ABCC4O15439 1325 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 CDHR2Q9BYE9 1310 aa12.51□□□□□ -0.41
CLK3-220ENST00000567992 CASP7P55210 303 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 RASSF7Q02833 373 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 NEXNQ0ZGT2 675 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 GCKRQ14397 625 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 SF3B3Q15393 1217 aaKnown RBP12.5□□□□□ -0.41
CLK3-220ENST00000567992 LINS1Q8NG48 757 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 JARID2Q92833 1246 aaPredicted RBP12.5□□□□□ -0.41
CLK3-220ENST00000567992 RPGRQ92834 1020 aaKnown RBP12.5□□□□□ -0.41
CLK3-220ENST00000567992 CRAMP1Q96RY5 1269 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 LTBP1Q14766 1721 aa12.5□□□□□ -0.41
CLK3-220ENST00000567992 PTPRCP08575 1304 aa12.49□□□□□ -0.41
CLK3-220ENST00000567992 H7C1W4 665 aa12.49□□□□□ -0.41
CLK3-220ENST00000567992 ALDH1B1P30837 517 aa12.49□□□□□ -0.41
CLK3-220ENST00000567992 RARSP54136 660 aaKnown RBP12.49□□□□□ -0.41
CLK3-220ENST00000567992 BRPF1P55201 1214 aaPredicted RBP12.49□□□□□ -0.41
CLK3-220ENST00000567992 RBM17Q96I25 401 aaKnown RBP12.49□□□□□ -0.41
CLK3-220ENST00000567992 SMC4Q9NTJ3 1288 aa12.49□□□□□ -0.41
CLK3-220ENST00000567992 ZNF219Q9P2Y4 722 aaPredicted RBP12.49□□□□□ -0.41
CLK3-220ENST00000567992 DUOX1Q9NRD9 1551 aa12.48□□□□□ -0.41
CLK3-220ENST00000567992 LTBP3Q9NS15 1303 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms