RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 BRPF1P55201 1214 aaPredicted RBP22.66■■□□□ 1.22
CDH3-205ENST00000566808 CRY2Q49AN0 593 aa22.66■■□□□ 1.22
CDH3-205ENST00000566808 RIC1Q4ADV7 1423 aa22.65■■□□□ 1.22
CDH3-205ENST00000566808 GRIPAP1Q4V328 841 aa22.65■■□□□ 1.22
CDH3-205ENST00000566808 HHIPL1Q96JK4 782 aa22.65■■□□□ 1.22
CDH3-205ENST00000566808 USP16Q9Y5T5 823 aa22.65■■□□□ 1.22
CDH3-205ENST00000566808 ABCC12Q96J65 1359 aa22.64■■□□□ 1.22
CDH3-205ENST00000566808 NUP98P52948 1817 aa22.64■■□□□ 1.22
CDH3-205ENST00000566808 KCNQ3O43525 872 aa22.64■■□□□ 1.21
CDH3-205ENST00000566808 SAPCD2Q86UD0 394 aa22.64■■□□□ 1.21
CDH3-205ENST00000566808 LARGE2Q8N3Y3 721 aa22.64■■□□□ 1.21
CDH3-205ENST00000566808 FAM177BA6PVY3 158 aa22.63■■□□□ 1.21
CDH3-205ENST00000566808 GTF2E1P29083 439 aaPredicted RBP22.63■■□□□ 1.21
CDH3-205ENST00000566808 SNRPA1P09661 255 aaKnown RBP22.62■■□□□ 1.21
CDH3-205ENST00000566808 DGKZQ13574 1117 aa22.62■■□□□ 1.21
CDH3-205ENST00000566808 PRAMEF22A3QJZ6 481 aa22.61■■□□□ 1.21
CDH3-205ENST00000566808 NYXQ9GZU5 481 aa22.61■■□□□ 1.21
CDH3-205ENST00000566808 ADARB2Q9NS39 739 aaKnown RBP22.61■■□□□ 1.21
CDH3-205ENST00000566808 U2SURPO15042 1029 aaKnown RBP22.6■■□□□ 1.21
CDH3-205ENST00000566808 CELF2O95319 508 aaKnown RBP22.6■■□□□ 1.21
CDH3-205ENST00000566808 NIM1KQ8IY84 436 aa22.6■■□□□ 1.21
CDH3-205ENST00000566808 GPRC5DQ9NZD1 345 aa22.6■■□□□ 1.21
CDH3-205ENST00000566808 IBTKQ9P2D0 1353 aaPredicted RBP22.6■■□□□ 1.21
CDH3-205ENST00000566808 RPGRQ92834 1020 aaKnown RBP22.59■■□□□ 1.21
CDH3-205ENST00000566808 KIF7Q2M1P5 1343 aa22.58■■□□□ 1.21
CDH3-205ENST00000566808 NBPF26B4DH59 902 aa22.58■■□□□ 1.21
CDH3-205ENST00000566808 HOXA10P31260 410 aaPredicted RBP22.58■■□□□ 1.21
CDH3-205ENST00000566808 NBPF10Q6P3W6 841 aaKnown RBP22.58■■□□□ 1.21
CDH3-205ENST00000566808 NBPF15Q8N660 670 aa22.58■■□□□ 1.21
CDH3-205ENST00000566808 CDHR2Q9BYE9 1310 aa22.57■■□□□ 1.2
CDH3-205ENST00000566808 HLFQ16534 295 aa22.56■■□□□ 1.2
CDH3-205ENST00000566808 CIAPIN1Q6FI81 312 aa22.56■■□□□ 1.2
CDH3-205ENST00000566808 CLSPNQ9HAW4 1339 aa22.56■■□□□ 1.2
CDH3-205ENST00000566808 NPC1L1Q9UHC9 1359 aa22.55■■□□□ 1.2
CDH3-205ENST00000566808 PPEF1O14829 653 aaPredicted RBP22.55■■□□□ 1.2
CDH3-205ENST00000566808 PPIP5K2O43314 1243 aa22.55■■□□□ 1.2
CDH3-205ENST00000566808 NOGQ13253 232 aa22.55■■□□□ 1.2
CDH3-205ENST00000566808 NUTM1Q86Y26 1132 aa22.55■■□□□ 1.2
CDH3-205ENST00000566808 GLIS2Q9BZE0 524 aaPredicted RBP22.54■■□□□ 1.2
CDH3-205ENST00000566808 CRAMP1Q96RY5 1269 aa22.53■■□□□ 1.2
CDH3-205ENST00000566808 VPS33BQ9H267 617 aa22.53■■□□□ 1.2
CDH3-205ENST00000566808 PGAP2Q9UHJ9 254 aa22.53■■□□□ 1.2
CDH3-205ENST00000566808 CC2D1BQ5T0F9 858 aaKnown RBP22.52■■□□□ 1.2
CDH3-205ENST00000566808 ZC3H15Q8WU90 426 aaKnown RBP22.52■■□□□ 1.2
CDH3-205ENST00000566808 RBM17Q96I25 401 aaKnown RBP22.52■■□□□ 1.2
CDH3-205ENST00000566808 ZNF408Q9H9D4 720 aa22.52■■□□□ 1.2
CDH3-205ENST00000566808 AKAP11Q9UKA4 1901 aa22.52■■□□□ 1.2
CDH3-205ENST00000566808 ERVV-1B6SEH8 477 aa22.51■■□□□ 1.19
CDH3-205ENST00000566808 PRKAR2BP31323 418 aa22.51■■□□□ 1.19
CDH3-205ENST00000566808 AOC3Q16853 763 aa22.51■■□□□ 1.19
CDH3-205ENST00000566808 PHACTR3Q96KR7 559 aa22.51■■□□□ 1.19
CDH3-205ENST00000566808 KDM3BQ7LBC6 1761 aa22.5■■□□□ 1.19
CDH3-205ENST00000566808 GMPSP49915 693 aaPredicted RBP22.5■■□□□ 1.19
CDH3-205ENST00000566808 SLC51AQ86UW1 340 aa22.5■■□□□ 1.19
CDH3-205ENST00000566808 RTF1Q92541 710 aaKnown RBP22.5■■□□□ 1.19
CDH3-205ENST00000566808 RSPH6AQ9H0K4 717 aa22.5■■□□□ 1.19
CDH3-205ENST00000566808 TMX4Q9H1E5 349 aaPredicted RBP22.5■■□□□ 1.19
CDH3-205ENST00000566808 ZNRF3Q9ULT6 936 aa22.5■■□□□ 1.19
CDH3-205ENST00000566808 CXCL9Q07325 125 aa22.49■■□□□ 1.19
CDH3-205ENST00000566808 PRPF38BQ5VTL8 546 aaKnown RBP22.49■■□□□ 1.19
CDH3-205ENST00000566808 SAGE1Q9NXZ1 904 aa22.49■■□□□ 1.19
CDH3-205ENST00000566808 MAP3K15Q6ZN16 1313 aa22.49■■□□□ 1.19
CDH3-205ENST00000566808 PER1O15534 1290 aaPredicted RBP22.48■■□□□ 1.19
CDH3-205ENST00000566808 CDC37L1Q7L3B6 337 aa22.48■■□□□ 1.19
CDH3-205ENST00000566808 SUPT20HQ8NEM7 779 aa22.48■■□□□ 1.19
CDH3-205ENST00000566808 UBN2Q6ZU65 1347 aa22.48■■□□□ 1.19
CDH3-205ENST00000566808 LAMB2P55268 1798 aa22.48■■□□□ 1.19
CDH3-205ENST00000566808 TCERG1O14776 1098 aaKnown RBP22.47■■□□□ 1.19
CDH3-205ENST00000566808 SOX10P56693 466 aa22.47■■□□□ 1.19
CDH3-205ENST00000566808 HUNKP57058 714 aa22.47■■□□□ 1.19
CDH3-205ENST00000566808 MCM10Q7L590 875 aa22.47■■□□□ 1.19
CDH3-205ENST00000566808 KIF6Q6ZMV9 814 aa22.46■■□□□ 1.19
CDH3-205ENST00000566808 ZIC5Q96T25 663 aa22.46■■□□□ 1.19
CDH3-205ENST00000566808 ATP6V0A2Q9Y487 856 aa22.46■■□□□ 1.19
CDH3-205ENST00000566808 ANKRD36CQ5JPF3 1778 aa22.45■■□□□ 1.19
CDH3-205ENST00000566808 GPTP24298 496 aa22.45■■□□□ 1.18
CDH3-205ENST00000566808 BCL2L13Q9BXK5 485 aa22.45■■□□□ 1.18
CDH3-205ENST00000566808 RTFDC1Q9BY42 306 aaPredicted RBP22.45■■□□□ 1.18
CDH3-205ENST00000566808 NTSR2O95665 410 aa22.44■■□□□ 1.18
CDH3-205ENST00000566808 TRPM4Q8TD43 1214 aa22.44■■□□□ 1.18
CDH3-205ENST00000566808 HIRAP54198 1017 aaPredicted RBP22.43■■□□□ 1.18
CDH3-205ENST00000566808 TNIP1Q15025 636 aa22.43■■□□□ 1.18
CDH3-205ENST00000566808 LRRC37AA6NMS7 1700 aa22.43■■□□□ 1.18
CDH3-205ENST00000566808 POLR2AP24928 1970 aaKnown RBP22.42■■□□□ 1.18
CDH3-205ENST00000566808 KIAA2012Q0VF49 1180 aa22.42■■□□□ 1.18
CDH3-205ENST00000566808 SUSD4Q5VX71 490 aa22.42■■□□□ 1.18
CDH3-205ENST00000566808 C3orf67Q6ZVT6 689 aa22.42■■□□□ 1.18
CDH3-205ENST00000566808 NGEFQ8N5V2 710 aa22.42■■□□□ 1.18
CDH3-205ENST00000566808 ABCC4O15439 1325 aa22.41■■□□□ 1.18
CDH3-205ENST00000566808 DDX60Q8IY21 1712 aaKnown RBP22.41■■□□□ 1.18
CDH3-205ENST00000566808 FAM155AB1AL88 458 aaPredicted RBP22.41■■□□□ 1.18
CDH3-205ENST00000566808 HTATSF1O43719 755 aaKnown RBP22.41■■□□□ 1.18
CDH3-205ENST00000566808 RGMBQ6NW40 437 aa22.41■■□□□ 1.18
CDH3-205ENST00000566808 TTLL7Q6ZT98 887 aa22.41■■□□□ 1.18
CDH3-205ENST00000566808 DUOX1Q9NRD9 1551 aa22.41■■□□□ 1.18
CDH3-205ENST00000566808 DLG5Q8TDM6 1919 aa22.41■■□□□ 1.18
CDH3-205ENST00000566808 RAD17O75943 681 aa22.4■■□□□ 1.18
CDH3-205ENST00000566808 DPP8Q6V1X1 898 aaPredicted RBP22.4■■□□□ 1.18
CDH3-205ENST00000566808 ZNF34Q8IZ26 560 aa22.4■■□□□ 1.18
CDH3-205ENST00000566808 CFAP53Q96M91 514 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms