RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	ATP5J	P18859	108 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	PSMA5	P28066	241 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	CASP7	P55210	303 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	CCDC173	Q0VFZ6	552 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	PKP1	Q13835	747 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	NECTIN1	Q15223	517 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	CHRNA2	Q15822	529 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	RNF20	Q5VTR2	975 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	CWC27	Q6UX04	472 aa	Known RBP	7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	TMEM87A	Q8NBN3	555 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	CABLES1	Q8TDN4	633 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	DDX17	Q92841	729 aa	Known RBP	7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	SYAP1	Q96A49	352 aa	Predicted RBP	7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	UPF3B	Q9BZI7	483 aa	Known RBP	7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	ZSWIM6	Q9HCJ5	1215 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	HMG20B	Q9P0W2	317 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	USP16	Q9Y5T5	823 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472	AK9	Q5TCS8	1911 aa		7.52	□□□□□ -1.21
CLN3-223	ENST00000566472		H7C1W4	665 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	IL2RB	P14784	551 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	AK2	P54819	239 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	PTPN12	Q05209	780 aa	Known RBP	7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	NMI	Q13287	307 aa	Predicted RBP	7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	ANKRD1	Q15327	319 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	TSGA10IP	Q3SY00	556 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	TNNI3K	Q59H18	835 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	EPHA10	Q5JZY3	1008 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	TOM1L2	Q6ZVM7	507 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	GAS2L3	Q86XJ1	694 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	MAP4K1	Q92918	833 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	PPP1R9B	Q96SB3	815 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	FSD1	Q9BTV5	496 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	ATG3	Q9NT62	314 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	PDRG1	Q9NUG6	133 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	FBXO3	Q9UK99	471 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	ATP6V1D	Q9Y5K8	247 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	CYP46A1	Q9Y6A2	500 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	FPGT-TNNI3K	V9GXZ4	949 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	NHSL1	Q5SYE7	1610 aa		7.51	□□□□□ -1.21
CLN3-223	ENST00000566472	NUP188	Q5SRE5	1749 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	PALLD	Q8WX93	1383 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	LRP6	O75581	1613 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472		A0A087WZG4	1122 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	PRPF40A	O75400	957 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	PHF14	O94880	888 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	NCL	P19338	710 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CAST	P20810	708 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	PTH1R	Q03431	593 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	KRT32	Q14532	448 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CSPP1	Q1MSJ5	1256 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	ZSCAN23	Q3MJ62	389 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CREB3L3	Q68CJ9	461 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CAVIN1	Q6NZI2	390 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	RUFY3	Q7L099	469 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	UBE3B	Q7Z3V4	1068 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	RASEF	Q8IZ41	740 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CCDC191	Q8NCU4	936 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	ANP32B	Q92688	251 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	JAKMIP1	Q96N16	626 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	TEX13A	Q9BXU3	409 aa	Predicted RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	PANK2	Q9BZ23	570 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CCDC8	Q9H0W5	538 aa	Predicted RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	CWC25	Q9NXE8	425 aa	Predicted RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	SMC3	Q9UQE7	1217 aa		7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	RBM8A	Q9Y5S9	174 aa	Known RBP	7.5	□□□□□ -1.21
CLN3-223	ENST00000566472	NBPF26	B4DH59	902 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	SLC27A2	O14975	620 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	CIAO1	O76071	339 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	ZSCAN22	P10073	491 aa	Predicted RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	IL15	P40933	162 aa	Predicted RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	NASP	P49321	788 aa	Predicted RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	NBPF14	Q5TI25	921 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	USPL1	Q5W0Q7	1092 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	PRPF40B	Q6NWY9	871 aa	Known RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	NBPF10	Q6P3W6	841 aa	Known RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	LRSAM1	Q6UWE0	723 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	VSIG10	Q8N0Z9	540 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	NBPF15	Q8N660	670 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	GPT2	Q8TD30	523 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	HAUS7	Q99871	368 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	BOLA2	Q9H3K6	86 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	TLR7	Q9NYK1	1049 aa	Known RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	SLAIN2	Q9P270	581 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	DBNL	Q9UJU6	430 aa	Known RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472		U3KPZ7	1027 aa	Predicted RBP	7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	TJP1	Q07157	1748 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	SHANK3	Q9BYB0	1731 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	SH3TC1	Q8TE82	1336 aa		7.49	□□□□□ -1.21
CLN3-223	ENST00000566472	STRC	Q7RTU9	1775 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	ABCC12	Q96J65	1359 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	AFDN	P55196	1824 aa	Known RBP	7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	SPEF2	Q9C093	1822 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472		A0A0D9SFI3	127 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	DISP2	A7MBM2	1401 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	ZNF609	O15014	1411 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	STX6	O43752	255 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	F13A1	P00488	732 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	CLCN1	P35523	988 aa		7.48	□□□□□ -1.21
CLN3-223	ENST00000566472	KCNJ4	P48050	445 aa		7.48	□□□□□ -1.21

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