RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 ZPR1O75312 459 aa23.38■■□□□ 1.33
COMMD4-213ENST00000565834 PHF14O94880 888 aa23.38■■□□□ 1.33
COMMD4-213ENST00000565834 ARHGEF1Q92888 912 aaKnown RBP23.38■■□□□ 1.33
COMMD4-213ENST00000565834 PNMA6EA0A0J9YXQ4 647 aa23.37■■□□□ 1.33
COMMD4-213ENST00000565834 SF3B2Q13435 895 aaKnown RBP23.37■■□□□ 1.33
COMMD4-213ENST00000565834 PPP1R42Q7Z4L9 355 aa23.37■■□□□ 1.33
COMMD4-213ENST00000565834 KAZALD1Q96I82 304 aa23.37■■□□□ 1.33
COMMD4-213ENST00000565834 BICC1Q9H694 974 aaKnown RBP23.37■■□□□ 1.33
COMMD4-213ENST00000565834 PCCAP05165 728 aaPredicted RBP23.36■■□□□ 1.33
COMMD4-213ENST00000565834 MTX1Q13505 466 aa23.36■■□□□ 1.33
COMMD4-213ENST00000565834 UBN2Q6ZU65 1347 aa23.36■■□□□ 1.33
COMMD4-213ENST00000565834 SSFA2P28290 1259 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 RFC4P35249 363 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 USPL1Q5W0Q7 1092 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 PELP1Q8IZL8 1130 aaKnown RBP23.35■■□□□ 1.33
COMMD4-213ENST00000565834 ZBTB38Q8NAP3 1195 aaPredicted RBP23.35■■□□□ 1.33
COMMD4-213ENST00000565834 SSH3Q8TE77 659 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 DCTPP1Q9H773 170 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.35■■□□□ 1.33
COMMD4-213ENST00000565834 SRGAP3O43295 1099 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 PARP10Q53GL7 1025 aa23.35■■□□□ 1.33
COMMD4-213ENST00000565834 RTL5Q5HYW3 569 aaPredicted RBP23.35■■□□□ 1.33
COMMD4-213ENST00000565834 SRP68Q9UHB9 627 aaKnown RBP23.35■■□□□ 1.33
COMMD4-213ENST00000565834 NIP7Q9Y221 180 aaKnown RBP eCLIP23.35■■□□□ 1.33
COMMD4-213ENST00000565834 POLA2Q14181 598 aa23.34■■□□□ 1.33
COMMD4-213ENST00000565834 USP42Q9H9J4 1324 aaKnown RBP23.34■■□□□ 1.33
COMMD4-213ENST00000565834 EPHA10Q5JZY3 1008 aa23.33■■□□□ 1.33
COMMD4-213ENST00000565834 CAMKK2Q96RR4 588 aa23.33■■□□□ 1.33
COMMD4-213ENST00000565834 BCL2L12Q9HB09 334 aa23.33■■□□□ 1.33
COMMD4-213ENST00000565834 TRMT112Q9UI30 125 aaKnown RBP23.33■■□□□ 1.33
COMMD4-213ENST00000565834 PDZRN3Q9UPQ7 1066 aa23.33■■□□□ 1.33
COMMD4-213ENST00000565834 TUBGCP6Q96RT7 1819 aa23.32■■□□□ 1.32
COMMD4-213ENST00000565834 BAG6P46379 1132 aa23.32■■□□□ 1.32
COMMD4-213ENST00000565834 EN1Q05925 392 aaPredicted RBP23.32■■□□□ 1.32
COMMD4-213ENST00000565834 FAM89AQ96GI7 184 aa23.32■■□□□ 1.32
COMMD4-213ENST00000565834 ZNF827Q17R98 1081 aa23.32■■□□□ 1.32
COMMD4-213ENST00000565834 AKT1S1Q96B36 256 aa23.32■■□□□ 1.32
COMMD4-213ENST00000565834 CDHR2Q9BYE9 1310 aa23.31■■□□□ 1.32
COMMD4-213ENST00000565834 MYH3P11055 1940 aa23.31■■□□□ 1.32
COMMD4-213ENST00000565834 EZH2Q15910 746 aaKnown RBP23.31■■□□□ 1.32
COMMD4-213ENST00000565834 RABL6Q3YEC7 729 aaPredicted RBP23.31■■□□□ 1.32
COMMD4-213ENST00000565834 SUSD4Q5VX71 490 aa23.31■■□□□ 1.32
COMMD4-213ENST00000565834 TFCP2L1Q9NZI6 479 aa23.31■■□□□ 1.32
COMMD4-213ENST00000565834 SKAP1Q86WV1 359 aa23.3■■□□□ 1.32
COMMD4-213ENST00000565834 UTP14AQ9BVJ6 771 aaKnown RBP23.3■■□□□ 1.32
COMMD4-213ENST00000565834 FOXO4P98177 505 aa23.29■■□□□ 1.32
COMMD4-213ENST00000565834 NUCB1Q02818 461 aa23.29■■□□□ 1.32
COMMD4-213ENST00000565834 COL24A1Q17RW2 1714 aa23.29■■□□□ 1.32
COMMD4-213ENST00000565834 ANKRD45Q5TZF3 282 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 TBC1D9BQ66K14 1250 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 PLA2G12BQ9BX93 195 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 SH3TC1Q8TE82 1336 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 FAM177BA6PVY3 158 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 LMBR1LQ6UX01 489 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 BICDL1Q6ZP65 573 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 EXOC6BQ9Y2D4 811 aa23.28■■□□□ 1.32
COMMD4-213ENST00000565834 LAMB2P55268 1798 aa23.27■■□□□ 1.32
COMMD4-213ENST00000565834 IRS4O14654 1257 aaPredicted RBP23.27■■□□□ 1.32
COMMD4-213ENST00000565834 CHD1LQ86WJ1 897 aa23.27■■□□□ 1.32
COMMD4-213ENST00000565834 SYNE4Q8N205 404 aa23.27■■□□□ 1.32
COMMD4-213ENST00000565834 SETDB2Q96T68 719 aa23.27■■□□□ 1.32
COMMD4-213ENST00000565834 SURF6O75683 361 aaKnown RBP23.26■■□□□ 1.31
COMMD4-213ENST00000565834 NTSR2O95665 410 aa23.26■■□□□ 1.31
COMMD4-213ENST00000565834 ZBTB47Q9UFB7 747 aaPredicted RBP23.26■■□□□ 1.31
COMMD4-213ENST00000565834 RGS3P49796 1198 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 CCDC125Q86Z20 511 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 FLAD1Q8NFF5 587 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 CHMP3Q9Y3E7 222 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 DDX60Q8IY21 1712 aaKnown RBP23.25■■□□□ 1.31
COMMD4-213ENST00000565834 APBB1O00213 710 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 DEFB132Q7Z7B7 95 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 LNPKQ9C0E8 428 aa23.25■■□□□ 1.31
COMMD4-213ENST00000565834 HSP90AB4PQ58FF6 505 aa23.24■■□□□ 1.31
COMMD4-213ENST00000565834 NOP58Q9Y2X3 529 aaKnown RBP23.24■■□□□ 1.31
COMMD4-213ENST00000565834 PDE8AO60658 829 aa23.23■■□□□ 1.31
COMMD4-213ENST00000565834 GYS1P13807 737 aa23.23■■□□□ 1.31
COMMD4-213ENST00000565834 HSP90B1P14625 803 aaKnown RBP23.23■■□□□ 1.31
COMMD4-213ENST00000565834 RAB11FIP3O75154 756 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 NYXQ9GZU5 481 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 PA2G4Q9UQ80 394 aaKnown RBP23.22■■□□□ 1.31
COMMD4-213ENST00000565834 QSER1Q2KHR3 1735 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 CTSWP56202 376 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 NUTM1Q86Y26 1132 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 LRRCC1Q9C099 1032 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 STK32BQ9NY57 414 aa23.22■■□□□ 1.31
COMMD4-213ENST00000565834 MSH5O43196 834 aa23.21■■□□□ 1.31
COMMD4-213ENST00000565834 CSF1RP07333 972 aa23.21■■□□□ 1.31
COMMD4-213ENST00000565834 RFX5P48382 616 aaPredicted RBP23.21■■□□□ 1.31
COMMD4-213ENST00000565834 OS9Q13438 667 aaPredicted RBP23.21■■□□□ 1.31
COMMD4-213ENST00000565834 NBPF5PQ86XG9 351 aaPredicted RBP23.21■■□□□ 1.31
COMMD4-213ENST00000565834 COL23A1Q86Y22 540 aaPredicted RBP23.21■■□□□ 1.31
COMMD4-213ENST00000565834 ANO8Q9HCE9 1232 aaPredicted RBP23.21■■□□□ 1.31
COMMD4-213ENST00000565834 CARMIL3Q8ND23 1372 aa23.21■■□□□ 1.31
COMMD4-213ENST00000565834 PDE4AP27815 886 aa23.2■■□□□ 1.3
COMMD4-213ENST00000565834 NFIXQ14938 502 aa23.2■■□□□ 1.3
COMMD4-213ENST00000565834 SLC15A2Q16348 729 aa23.2■■□□□ 1.3
COMMD4-213ENST00000565834 COPRSQ9NQ92 184 aa23.2■■□□□ 1.3
COMMD4-213ENST00000565834 PNPLA7Q6ZV29 1317 aa23.2■■□□□ 1.3
COMMD4-213ENST00000565834 SMARCA5O60264 1052 aaPredicted RBP23.19■■□□□ 1.3
COMMD4-213ENST00000565834 HCLS1P14317 486 aaPredicted RBP23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms