RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CAMTA2O94983 1202 aa22.24■■□□□ 1.15
CLN3-217ENST00000565354 ST5P78524 1137 aa22.24■■□□□ 1.15
CLN3-217ENST00000565354 HNRNPUQ00839 825 aaKnown RBP eCLIP22.24■■□□□ 1.15
CLN3-217ENST00000565354 LDHDQ86WU2 507 aa22.24■■□□□ 1.15
CLN3-217ENST00000565354 MASTLQ96GX5 879 aa22.24■■□□□ 1.15
CLN3-217ENST00000565354 L3MBTL3Q96JM7 780 aaPredicted RBP22.24■■□□□ 1.15
CLN3-217ENST00000565354 CHMP4AQ9BY43 222 aa22.23■■□□□ 1.15
CLN3-217ENST00000565354 PRDM10Q9NQV6 1147 aa22.23■■□□□ 1.15
CLN3-217ENST00000565354 ZNF521Q96K83 1311 aa22.23■■□□□ 1.15
CLN3-217ENST00000565354 NBPF26B4DH59 902 aa22.22■■□□□ 1.15
CLN3-217ENST00000565354 NBPF10Q6P3W6 841 aaKnown RBP22.22■■□□□ 1.15
CLN3-217ENST00000565354 DZIP3Q86Y13 1208 aaKnown RBP22.22■■□□□ 1.15
CLN3-217ENST00000565354 NBPF15Q8N660 670 aa22.22■■□□□ 1.15
CLN3-217ENST00000565354 C8orf58Q8NAV2 365 aa22.22■■□□□ 1.15
CLN3-217ENST00000565354 TAF1DQ9H5J8 278 aaPredicted RBP22.22■■□□□ 1.15
CLN3-217ENST00000565354 E9PSI1 815 aa22.2■■□□□ 1.14
CLN3-217ENST00000565354 TWISTNBQ3B726 338 aaPredicted RBP22.2■■□□□ 1.14
CLN3-217ENST00000565354 C7orf43Q8WVR3 580 aa22.2■■□□□ 1.14
CLN3-217ENST00000565354 AIDAQ96BJ3 306 aa22.2■■□□□ 1.14
CLN3-217ENST00000565354 SPINK5Q9NQ38 1064 aaPredicted RBP22.2■■□□□ 1.14
CLN3-217ENST00000565354 TMEM88BA6NKF7 163 aa22.19■■□□□ 1.14
CLN3-217ENST00000565354 CTCFP49711 727 aaPredicted RBP22.19■■□□□ 1.14
CLN3-217ENST00000565354 VEGFBP49765 207 aa22.19■■□□□ 1.14
CLN3-217ENST00000565354 KIF6Q6ZMV9 814 aa22.19■■□□□ 1.14
CLN3-217ENST00000565354 ITGBL1O95965 494 aaPredicted RBP22.18■■□□□ 1.14
CLN3-217ENST00000565354 ANXA1P04083 346 aa22.18■■□□□ 1.14
CLN3-217ENST00000565354 EXOSC9Q06265 439 aaKnown RBP22.18■■□□□ 1.14
CLN3-217ENST00000565354 CCDC93Q567U6 631 aa22.18■■□□□ 1.14
CLN3-217ENST00000565354 TSPYL6Q8N831 410 aa22.18■■□□□ 1.14
CLN3-217ENST00000565354 CHPF2Q9P2E5 772 aa22.18■■□□□ 1.14
CLN3-217ENST00000565354 DBF4Q9UBU7 674 aaPredicted RBP22.18■■□□□ 1.14
CLN3-217ENST00000565354 ADAMTSL1Q8N6G6 1762 aa22.17■■□□□ 1.14
CLN3-217ENST00000565354 CCDC30Q5VVM6 783 aa22.17■■□□□ 1.14
CLN3-217ENST00000565354 NBPF5PQ86XG9 351 aaPredicted RBP22.17■■□□□ 1.14
CLN3-217ENST00000565354 DDX21Q9NR30 783 aaKnown RBP eCLIP22.17■■□□□ 1.14
CLN3-217ENST00000565354 ZNF652Q9Y2D9 606 aa22.17■■□□□ 1.14
CLN3-217ENST00000565354 NPR1P16066 1061 aa22.16■■□□□ 1.14
CLN3-217ENST00000565354 EAPPQ56P03 285 aaPredicted RBP22.16■■□□□ 1.14
CLN3-217ENST00000565354 CLEC4GQ6UXB4 293 aa22.16■■□□□ 1.14
CLN3-217ENST00000565354 ZNF541Q9H0D2 1346 aa22.15■■□□□ 1.14
CLN3-217ENST00000565354 FKBP4Q02790 459 aaKnown RBP eCLIP22.15■■□□□ 1.14
CLN3-217ENST00000565354 AIMP1Q12904 312 aaKnown RBP22.15■■□□□ 1.14
CLN3-217ENST00000565354 PROSER3Q2NL68 480 aa22.15■■□□□ 1.14
CLN3-217ENST00000565354 STK31Q9BXU1 1019 aa22.15■■□□□ 1.14
CLN3-217ENST00000565354 WBP1LQ9NX94 342 aa22.15■■□□□ 1.14
CLN3-217ENST00000565354 HACL1Q9UJ83 578 aa22.15■■□□□ 1.14
CLN3-217ENST00000565354 KLRG2A4D1S0 409 aaPredicted RBP22.14■■□□□ 1.13
CLN3-217ENST00000565354 SLFN5Q08AF3 891 aa22.14■■□□□ 1.13
CLN3-217ENST00000565354 PDIA6Q15084 440 aa22.14■■□□□ 1.13
CLN3-217ENST00000565354 ZNF277Q9NRM2 450 aaPredicted RBP22.14■■□□□ 1.13
CLN3-217ENST00000565354 HYPKQ9NX55 129 aa22.14■■□□□ 1.13
CLN3-217ENST00000565354 TTLL7Q6ZT98 887 aa22.13■■□□□ 1.13
CLN3-217ENST00000565354 CDCA7LQ96GN5 454 aa22.13■■□□□ 1.13
CLN3-217ENST00000565354 CLEC11AQ9Y240 323 aa22.13■■□□□ 1.13
CLN3-217ENST00000565354 MAP3K15Q6ZN16 1313 aa22.12■■□□□ 1.13
CLN3-217ENST00000565354 EPHX2P34913 555 aa22.12■■□□□ 1.13
CLN3-217ENST00000565354 COPS6Q7L5N1 327 aa22.12■■□□□ 1.13
CLN3-217ENST00000565354 RTKN2Q8IZC4 609 aa22.12■■□□□ 1.13
CLN3-217ENST00000565354 XAGE3Q8WTP9 111 aa22.12■■□□□ 1.13
CLN3-217ENST00000565354 ZBTB3Q9H5J0 574 aa22.12■■□□□ 1.13
CLN3-217ENST00000565354 RASSF10A6NK89 507 aa22.11■■□□□ 1.13
CLN3-217ENST00000565354 TCERG1O14776 1098 aaKnown RBP22.11■■□□□ 1.13
CLN3-217ENST00000565354 LBX1P52954 281 aa22.11■■□□□ 1.13
CLN3-217ENST00000565354 OLFM4Q6UX06 510 aa22.11■■□□□ 1.13
CLN3-217ENST00000565354 PNMA8AQ86V59 439 aaPredicted RBP22.11■■□□□ 1.13
CLN3-217ENST00000565354 ERVV-1B6SEH8 477 aa22.1■■□□□ 1.13
CLN3-217ENST00000565354 TPTE2Q6XPS3 522 aa22.1■■□□□ 1.13
CLN3-217ENST00000565354 RNF123Q5XPI4 1314 aa22.09■■□□□ 1.13
CLN3-217ENST00000565354 FZD9O00144 591 aa22.09■■□□□ 1.13
CLN3-217ENST00000565354 VAMP4O75379 141 aa22.09■■□□□ 1.13
CLN3-217ENST00000565354 DEFB115Q30KQ5 88 aa22.09■■□□□ 1.13
CLN3-217ENST00000565354 CNTROBQ8N137 903 aa22.09■■□□□ 1.13
CLN3-217ENST00000565354 RGL2O15211 777 aa22.08■■□□□ 1.13
CLN3-217ENST00000565354 IARSP41252 1262 aaKnown RBP22.08■■□□□ 1.13
CLN3-217ENST00000565354 MAP1SQ66K74 1059 aaPredicted RBP22.08■■□□□ 1.13
CLN3-217ENST00000565354 LRP10Q7Z4F1 713 aa22.08■■□□□ 1.13
CLN3-217ENST00000565354 NIP7Q9Y221 180 aaKnown RBP eCLIP22.08■■□□□ 1.13
CLN3-217ENST00000565354 ZBED9Q6R2W3 1325 aa22.07■■□□□ 1.12
CLN3-217ENST00000565354 HLFQ16534 295 aa22.07■■□□□ 1.12
CLN3-217ENST00000565354 WDR33Q9C0J8 1336 aaKnown RBP22.06■■□□□ 1.12
CLN3-217ENST00000565354 DDX58O95786 925 aaKnown RBP22.06■■□□□ 1.12
CLN3-217ENST00000565354 SLC4A2P04920 1241 aa22.06■■□□□ 1.12
CLN3-217ENST00000565354 HSPA8P11142 646 aaKnown RBP22.06■■□□□ 1.12
CLN3-217ENST00000565354 ALDH1B1P30837 517 aa22.06■■□□□ 1.12
CLN3-217ENST00000565354 MAP2K1Q02750 393 aaPredicted RBP22.06■■□□□ 1.12
CLN3-217ENST00000565354 GPC2Q8N158 579 aa22.06■■□□□ 1.12
CLN3-217ENST00000565354 SYNE4Q8N205 404 aa22.06■■□□□ 1.12
CLN3-217ENST00000565354 PHAXQ9H814 394 aaKnown RBP22.06■■□□□ 1.12
CLN3-217ENST00000565354 HSP90AB3PQ58FF7 597 aa22.05■■□□□ 1.12
CLN3-217ENST00000565354 GIGYF2Q6Y7W6 1299 aaKnown RBP22.05■■□□□ 1.12
CLN3-217ENST00000565354 ANKRD13DQ6ZTN6 518 aa22.05■■□□□ 1.12
CLN3-217ENST00000565354 ABHD8Q96I13 439 aa22.05■■□□□ 1.12
CLN3-217ENST00000565354 NUP98P52948 1817 aa22.04■■□□□ 1.12
CLN3-217ENST00000565354 FAM177BA6PVY3 158 aa22.04■■□□□ 1.12
CLN3-217ENST00000565354 RIC3Q7Z5B4 369 aa22.04■■□□□ 1.12
CLN3-217ENST00000565354 TRMT2AQ8IZ69 625 aaKnown RBP22.04■■□□□ 1.12
CLN3-217ENST00000565354 PLBD2Q8NHP8 589 aa22.04■■□□□ 1.12
CLN3-217ENST00000565354 PSMD1Q99460 953 aa22.04■■□□□ 1.12
CLN3-217ENST00000565354 ABT1Q9ULW3 272 aaKnown RBP22.04■■□□□ 1.12
CLN3-217ENST00000565354 SNED1Q8TER0 1413 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms