RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PRAMEF22A3QJZ6 481 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 F6X3S4 739 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 H0YIN7 160 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 PIP4K2AP48426 406 aaPredicted RBP11.15□□□□□ -0.62
VPS39-207ENST00000563692 RGS3P49796 1198 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 ST5P78524 1137 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 PHAXQ9H814 394 aaKnown RBP11.15□□□□□ -0.62
VPS39-207ENST00000563692 DDX21Q9NR30 783 aaKnown RBP eCLIP11.15□□□□□ -0.62
VPS39-207ENST00000563692 ZBTB47Q9UFB7 747 aaPredicted RBP11.15□□□□□ -0.62
VPS39-207ENST00000563692 ATP10DQ9P241 1426 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 SIPA1L3O60292 1781 aaPredicted RBP11.15□□□□□ -0.62
VPS39-207ENST00000563692 KDM3BQ7LBC6 1761 aa11.15□□□□□ -0.62
VPS39-207ENST00000563692 HMMRO75330 724 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 CAMTA2O94983 1202 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 GNAI2P04899 355 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 KCNA3P22001 575 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 PDE6BP35913 854 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 CLEC4GQ6UXB4 293 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 C2CD5Q86YS7 1000 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 SMC5Q8IY18 1101 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 CNBD1Q8NA66 436 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 ZNF526Q8TF50 670 aaPredicted RBP11.14□□□□□ -0.63
VPS39-207ENST00000563692 DNAAF4Q8WXU2 420 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 SRCIN1Q9C0H9 1055 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 KIF13BQ9NQT8 1826 aa11.14□□□□□ -0.63
VPS39-207ENST00000563692 RGL2O15211 777 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 PDE4AP27815 886 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 C1QTNF8P60827 252 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 KSR2Q6VAB6 950 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 KIF6Q6ZMV9 814 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 NBPF5PQ86XG9 351 aaPredicted RBP11.13□□□□□ -0.63
VPS39-207ENST00000563692 TTLL6Q8N841 843 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 ANKRD44Q8N8A2 993 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 BRIP1Q9BX63 1249 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 C1orf115Q9H7X2 142 aa11.13□□□□□ -0.63
VPS39-207ENST00000563692 PI4KAP2A4QPH2 592 aa11.12□□□□□ -0.63
VPS39-207ENST00000563692 PI4KAP1Q8N8J0 262 aa11.12□□□□□ -0.63
VPS39-207ENST00000563692 ZNF622Q969S3 477 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS39-207ENST00000563692 ADCY9O60503 1353 aa11.12□□□□□ -0.63
VPS39-207ENST00000563692 ERBB4Q15303 1308 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 N4BP2Q86UW6 1770 aaPredicted RBP11.11□□□□□ -0.63
VPS39-207ENST00000563692 CACNA1FO60840 1977 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 NBPF26B4DH59 902 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 ALDH1L1O75891 902 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 GTF2E1P29083 439 aaPredicted RBP11.11□□□□□ -0.63
VPS39-207ENST00000563692 NUCB1Q02818 461 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 NEXNQ0ZGT2 675 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 FAM161AQ3B820 660 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 ANKRD45Q5TZF3 282 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 PRR5LQ6MZQ0 368 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 NBPF10Q6P3W6 841 aaKnown RBP11.11□□□□□ -0.63
VPS39-207ENST00000563692 TPTE2Q6XPS3 522 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 RIC3Q7Z5B4 369 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 NBPF15Q8N660 670 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 MEIS3Q99687 375 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 BACH2Q9BYV9 841 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 DCTPP1Q9H773 170 aa11.11□□□□□ -0.63
VPS39-207ENST00000563692 NIP7Q9Y221 180 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS39-207ENST00000563692 UBTFL1P0CB47 393 aaPredicted RBP11.1□□□□□ -0.63
VPS39-207ENST00000563692 MYL6BP14649 208 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 PDIA6Q15084 440 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 BEND3Q5T5X7 828 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 C9orf131Q5VYM1 1079 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 CEP85Q6P2H3 762 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 CHD1LQ86WJ1 897 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 RNF181Q9P0P0 153 aa11.1□□□□□ -0.63
VPS39-207ENST00000563692 SCN7AQ01118 1682 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 ERVV-1B6SEH8 477 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 ANXA1P04083 346 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 ATP8B2P98198 1209 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 AIMP1Q12904 312 aaKnown RBP11.09□□□□□ -0.63
VPS39-207ENST00000563692 SIRT2Q8IXJ6 389 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 CCDC24Q8N4L8 307 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 CNKSR1Q969H4 720 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 NYXQ9GZU5 481 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 USP44Q9H0E7 712 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 MAP3K2Q9Y2U5 619 aa11.09□□□□□ -0.63
VPS39-207ENST00000563692 FAM177BA6PVY3 158 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 SOGA3Q5TF21 947 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 STYK1Q6J9G0 422 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 ANKRD13DQ6ZTN6 518 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 COPS6Q7L5N1 327 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 LINS1Q8NG48 757 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 MASTLQ96GX5 879 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 C9orf78Q9NZ63 289 aaPredicted RBP11.08□□□□□ -0.64
VPS39-207ENST00000563692 KIAA1551Q9HCM1 1747 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 MAP3K15Q6ZN16 1313 aa11.08□□□□□ -0.64
VPS39-207ENST00000563692 LMNB1P20700 586 aa11.07□□□□□ -0.64
VPS39-207ENST00000563692 PROSER3Q2NL68 480 aa11.07□□□□□ -0.64
VPS39-207ENST00000563692 XAGE3Q8WTP9 111 aa11.07□□□□□ -0.64
VPS39-207ENST00000563692 NRXN2Q9P2S2 1712 aa11.06□□□□□ -0.64
VPS39-207ENST00000563692 SRGNP10124 158 aa11.06□□□□□ -0.64
VPS39-207ENST00000563692 NPR1P16066 1061 aa11.06□□□□□ -0.64
VPS39-207ENST00000563692 HLFQ16534 295 aa11.06□□□□□ -0.64
VPS39-207ENST00000563692 TTLL7Q6ZT98 887 aa11.06□□□□□ -0.64
VPS39-207ENST00000563692 C16orf71Q8IYS4 520 aaPredicted RBP11.06□□□□□ -0.64
VPS39-207ENST00000563692 METTL22Q9BUU2 404 aaPredicted RBP11.06□□□□□ -0.64
VPS39-207ENST00000563692 LNPKQ9C0E8 428 aa11.06□□□□□ -0.64
VPS39-207ENST00000563692 ZBTB3Q9H5J0 574 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms