RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 CNTNAP4Q9C0A0 1308 aa17.17■□□□□ 0.34
SMPD3-205ENST00000563455 PRAMEF22A3QJZ6 481 aa17.16■□□□□ 0.34
SMPD3-205ENST00000563455 MMP10P09238 476 aa17.16■□□□□ 0.34
SMPD3-205ENST00000563455 MYL6BP14649 208 aa17.16■□□□□ 0.34
SMPD3-205ENST00000563455 LRRFIP2Q9Y608 721 aaKnown RBP17.16■□□□□ 0.34
SMPD3-205ENST00000563455 CHD4Q14839 1912 aa17.15■□□□□ 0.34
SMPD3-205ENST00000563455 PTCD1O75127 700 aaKnown RBP17.15■□□□□ 0.34
SMPD3-205ENST00000563455 AIMP1Q12904 312 aaKnown RBP17.15■□□□□ 0.34
SMPD3-205ENST00000563455 POLA2Q14181 598 aa17.15■□□□□ 0.34
SMPD3-205ENST00000563455 ERC1Q8IUD2 1116 aa17.15■□□□□ 0.34
SMPD3-205ENST00000563455 ARHGEF1Q92888 912 aaKnown RBP17.15■□□□□ 0.34
SMPD3-205ENST00000563455 CCDC87Q9NVE4 849 aa17.15■□□□□ 0.34
SMPD3-205ENST00000563455 PARP3Q9Y6F1 533 aa17.15■□□□□ 0.34
SMPD3-205ENST00000563455 ANXA1P04083 346 aa17.14■□□□□ 0.33
SMPD3-205ENST00000563455 TRIM28Q13263 835 aaKnown RBP17.14■□□□□ 0.33
SMPD3-205ENST00000563455 HSP90AB3PQ58FF7 597 aa17.14■□□□□ 0.33
SMPD3-205ENST00000563455 AMIGO3Q86WK7 504 aa17.14■□□□□ 0.33
SMPD3-205ENST00000563455 LRRCC1Q9C099 1032 aa17.14■□□□□ 0.33
SMPD3-205ENST00000563455 LNPKQ9C0E8 428 aa17.14■□□□□ 0.33
SMPD3-205ENST00000563455 ITGB4P16144 1822 aa17.14■□□□□ 0.33
SMPD3-205ENST00000563455 TUBGCP6Q96RT7 1819 aa17.13■□□□□ 0.33
SMPD3-205ENST00000563455 NEURL1BA8MQ27 555 aa17.13■□□□□ 0.33
SMPD3-205ENST00000563455 GCKRQ14397 625 aa17.13■□□□□ 0.33
SMPD3-205ENST00000563455 C8orf34Q49A92 452 aa17.13■□□□□ 0.33
SMPD3-205ENST00000563455 CCDC191Q8NCU4 936 aa17.13■□□□□ 0.33
SMPD3-205ENST00000563455 GPBP1L1Q9HC44 474 aaPredicted RBP17.13■□□□□ 0.33
SMPD3-205ENST00000563455 TOGARAM1Q9Y4F4 1720 aa17.13■□□□□ 0.33
SMPD3-205ENST00000563455 RGL2O15211 777 aa17.12■□□□□ 0.33
SMPD3-205ENST00000563455 KIF6Q6ZMV9 814 aa17.12■□□□□ 0.33
SMPD3-205ENST00000563455 SMIM5Q71RC9 77 aa17.12■□□□□ 0.33
SMPD3-205ENST00000563455 SLC4A9Q96Q91 983 aa17.12■□□□□ 0.33
SMPD3-205ENST00000563455 OSBPL3Q9H4L5 887 aa17.12■□□□□ 0.33
SMPD3-205ENST00000563455 NOP58Q9Y2X3 529 aaKnown RBP17.12■□□□□ 0.33
SMPD3-205ENST00000563455 NBPF26B4DH59 902 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 SRGAP3O43295 1099 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 NBPF7P0C2Y1 421 aaPredicted RBP17.11■□□□□ 0.33
SMPD3-205ENST00000563455 IL6STP40189 918 aaPredicted RBP17.11■□□□□ 0.33
SMPD3-205ENST00000563455 NBPF10Q6P3W6 841 aaKnown RBP17.11■□□□□ 0.33
SMPD3-205ENST00000563455 PPP1R42Q7Z4L9 355 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 NBPF15Q8N660 670 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 KIF1BPQ96EK5 621 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 DDRGK1Q96HY6 314 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 TAF1LQ8IZX4 1826 aa17.11■□□□□ 0.33
SMPD3-205ENST00000563455 ERVV-1B6SEH8 477 aa17.1■□□□□ 0.33
SMPD3-205ENST00000563455 GYS1P13807 737 aa17.1■□□□□ 0.33
SMPD3-205ENST00000563455 CRKLP46109 303 aaKnown RBP17.1■□□□□ 0.33
SMPD3-205ENST00000563455 MYD88Q99836 296 aa17.1■□□□□ 0.33
SMPD3-205ENST00000563455 AOX1Q06278 1338 aa17.1■□□□□ 0.33
SMPD3-205ENST00000563455 UTRNP46939 3433 aa17.09■□□□□ 0.33
SMPD3-205ENST00000563455 IGKV5-2P06315 115 aa17.09■□□□□ 0.33
SMPD3-205ENST00000563455 CYP19A1P11511 503 aaPredicted RBP17.09■□□□□ 0.33
SMPD3-205ENST00000563455 HSP90B1P14625 803 aaKnown RBP17.09■□□□□ 0.33
SMPD3-205ENST00000563455 CWC25Q9NXE8 425 aaPredicted RBP17.09■□□□□ 0.33
SMPD3-205ENST00000563455 ZPR1O75312 459 aa17.08■□□□□ 0.32
SMPD3-205ENST00000563455 A1BGP04217 495 aa17.08■□□□□ 0.32
SMPD3-205ENST00000563455 CASC1Q6TDU7 716 aa17.08■□□□□ 0.32
SMPD3-205ENST00000563455 DNAJC10Q8IXB1 793 aa17.08■□□□□ 0.32
SMPD3-205ENST00000563455 PNMA6EA0A0J9YXQ4 647 aa17.07■□□□□ 0.32
SMPD3-205ENST00000563455 SURF6O75683 361 aaKnown RBP17.07■□□□□ 0.32
SMPD3-205ENST00000563455 TCIRG1Q13488 830 aa17.07■□□□□ 0.32
SMPD3-205ENST00000563455 CWF19L2Q2TBE0 894 aaKnown RBP17.07■□□□□ 0.32
SMPD3-205ENST00000563455 PLEKHM2Q8IWE5 1019 aa17.07■□□□□ 0.32
SMPD3-205ENST00000563455 UBR3Q6ZT12 1888 aa17.06■□□□□ 0.32
SMPD3-205ENST00000563455 H7C1W4 665 aa17.06■□□□□ 0.32
SMPD3-205ENST00000563455 STAP2Q9UGK3 403 aa17.06■□□□□ 0.32
SMPD3-205ENST00000563455 BCS1LQ9Y276 419 aa17.06■□□□□ 0.32
SMPD3-205ENST00000563455 ZNF831Q5JPB2 1677 aa17.06■□□□□ 0.32
SMPD3-205ENST00000563455 MAP3K15Q6ZN16 1313 aa17.05■□□□□ 0.32
SMPD3-205ENST00000563455 A0A087WZG4 1122 aa17.05■□□□□ 0.32
SMPD3-205ENST00000563455 A0A0G2JLW4 131 aa17.05■□□□□ 0.32
SMPD3-205ENST00000563455 RABL6Q3YEC7 729 aaPredicted RBP17.05■□□□□ 0.32
SMPD3-205ENST00000563455 GIGYF2Q6Y7W6 1299 aaKnown RBP17.05■□□□□ 0.32
SMPD3-205ENST00000563455 PIM2Q9P1W9 311 aa17.05■□□□□ 0.32
SMPD3-205ENST00000563455 CICQ96RK0 1608 aaPredicted RBP17.04■□□□□ 0.32
SMPD3-205ENST00000563455 USP42Q9H9J4 1324 aaKnown RBP17.04■□□□□ 0.32
SMPD3-205ENST00000563455 G3BP1Q13283 466 aaKnown RBP eCLIP17.04■□□□□ 0.32
SMPD3-205ENST00000563455 ARHGAP27Q6ZUM4 889 aa17.04■□□□□ 0.32
SMPD3-205ENST00000563455 SKAP1Q86WV1 359 aa17.04■□□□□ 0.32
SMPD3-205ENST00000563455 GPATCH3Q96I76 525 aa17.04■□□□□ 0.32
SMPD3-205ENST00000563455 ISCA1Q9BUE6 129 aa17.04■□□□□ 0.32
SMPD3-205ENST00000563455 FBXO3Q9UK99 471 aa17.04■□□□□ 0.32
SMPD3-205ENST00000563455 TTC22Q5TAA0 569 aa17.03■□□□□ 0.32
SMPD3-205ENST00000563455 INTS5Q6P9B9 1019 aaKnown RBP17.03■□□□□ 0.32
SMPD3-205ENST00000563455 CLASRPQ8N2M8 674 aaKnown RBP17.03■□□□□ 0.32
SMPD3-205ENST00000563455 IL27Q8NEV9 243 aa17.03■□□□□ 0.32
SMPD3-205ENST00000563455 RHPN1Q8TCX5 695 aa17.03■□□□□ 0.32
SMPD3-205ENST00000563455 IPO9Q96P70 1041 aaKnown RBP17.03■□□□□ 0.32
SMPD3-205ENST00000563455 WWC3Q9ULE0 1092 aa17.03■□□□□ 0.32
SMPD3-205ENST00000563455 CDC45O75419 566 aa17.02■□□□□ 0.32
SMPD3-205ENST00000563455 DPEP1P16444 411 aa17.02■□□□□ 0.32
SMPD3-205ENST00000563455 PDE1AP54750 535 aa17.02■□□□□ 0.32
SMPD3-205ENST00000563455 OS9Q13438 667 aaPredicted RBP17.02■□□□□ 0.32
SMPD3-205ENST00000563455 TTLL7Q6ZT98 887 aa17.02■□□□□ 0.32
SMPD3-205ENST00000563455 COPRSQ9NQ92 184 aa17.02■□□□□ 0.32
SMPD3-205ENST00000563455 EXOC6BQ9Y2D4 811 aa17.02■□□□□ 0.32
SMPD3-205ENST00000563455 TTC41PQ6P2S7 1318 aa17.01■□□□□ 0.31
SMPD3-205ENST00000563455 ERC2O15083 957 aa17.01■□□□□ 0.31
SMPD3-205ENST00000563455 PCCAP05165 728 aaPredicted RBP17.01■□□□□ 0.31
SMPD3-205ENST00000563455 MX1P20591 662 aa17.01■□□□□ 0.31
SMPD3-205ENST00000563455 DALRD3Q5D0E6 543 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms