RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 NUTM2EB1AL46 878 aaPredicted RBP23.24■■□□□ 1.31
SMPD3-203ENST00000563226 PIP4K2BP78356 416 aa23.24■■□□□ 1.31
SMPD3-203ENST00000563226 NUTM2AQ8IVF1 878 aaPredicted RBP23.24■■□□□ 1.31
SMPD3-203ENST00000563226 SPATA31A1Q5TZJ5 1347 aa23.24■■□□□ 1.31
SMPD3-203ENST00000563226 ST18O60284 1047 aa23.24■■□□□ 1.31
SMPD3-203ENST00000563226 MCCP23508 829 aa23.24■■□□□ 1.31
SMPD3-203ENST00000563226 TFCP2Q12800 502 aa23.24■■□□□ 1.31
SMPD3-203ENST00000563226 TEX13AQ9BXU3 409 aaPredicted RBP23.24■■□□□ 1.31
SMPD3-203ENST00000563226 ISCA1Q9BUE6 129 aa23.23■■□□□ 1.31
SMPD3-203ENST00000563226 CHMP3Q9Y3E7 222 aa23.23■■□□□ 1.31
SMPD3-203ENST00000563226 LSG1Q9H089 658 aaKnown RBP23.23■■□□□ 1.31
SMPD3-203ENST00000563226 CIZ1Q9ULV3 898 aaPredicted RBP23.23■■□□□ 1.31
SMPD3-203ENST00000563226 STARD3NLO95772 234 aa23.22■■□□□ 1.31
SMPD3-203ENST00000563226 PRIM1P49642 420 aaKnown RBP23.22■■□□□ 1.31
SMPD3-203ENST00000563226 RAD50Q92878 1312 aa23.22■■□□□ 1.31
SMPD3-203ENST00000563226 MCM4P33991 863 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 NEK4P51957 841 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 ANAPC15P60006 121 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 TCIRG1Q13488 830 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 TNNI3KQ59H18 835 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 EVI5LQ96CN4 794 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 BOLA2Q9H3K6 86 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 FPGT-TNNI3KV9GXZ4 949 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 HSPA4P34932 840 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 DIAPH3Q9NSV4 1193 aa23.21■■□□□ 1.31
SMPD3-203ENST00000563226 DBNLQ9UJU6 430 aaKnown RBP23.21■■□□□ 1.31
SMPD3-203ENST00000563226 CYP19A1P11511 503 aaPredicted RBP23.2■■□□□ 1.3
SMPD3-203ENST00000563226 IL17RAQ96F46 866 aa23.2■■□□□ 1.3
SMPD3-203ENST00000563226 RAB3GAP1Q15042 981 aa23.2■■□□□ 1.3
SMPD3-203ENST00000563226 EPB41L2O43491 1005 aaKnown RBP23.19■■□□□ 1.3
SMPD3-203ENST00000563226 KIF6Q6ZMV9 814 aa23.19■■□□□ 1.3
SMPD3-203ENST00000563226 TNPO1Q92973 898 aaKnown RBP23.19■■□□□ 1.3
SMPD3-203ENST00000563226 GSE1Q14687 1217 aa23.18■■□□□ 1.3
SMPD3-203ENST00000563226 ARXQ96QS3 562 aa23.18■■□□□ 1.3
SMPD3-203ENST00000563226 ZBTB1Q9Y2K1 713 aa23.18■■□□□ 1.3
SMPD3-203ENST00000563226 NWD2Q9ULI1 1742 aa23.18■■□□□ 1.3
SMPD3-203ENST00000563226 DDB1Q16531 1140 aa23.18■■□□□ 1.3
SMPD3-203ENST00000563226 ATG9AQ7Z3C6 839 aa23.18■■□□□ 1.3
SMPD3-203ENST00000563226 MAP3K15Q6ZN16 1313 aa23.17■■□□□ 1.3
SMPD3-203ENST00000563226 HLFQ16534 295 aa23.17■■□□□ 1.3
SMPD3-203ENST00000563226 CDCA7Q9BWT1 371 aaPredicted RBP23.17■■□□□ 1.3
SMPD3-203ENST00000563226 THRAP3Q9Y2W1 955 aaKnown RBP23.17■■□□□ 1.3
SMPD3-203ENST00000563226 SPATA31A5Q5VU36 1347 aa23.17■■□□□ 1.3
SMPD3-203ENST00000563226 SPATA31A7Q8IWB4 1347 aa23.17■■□□□ 1.3
SMPD3-203ENST00000563226 EDC3Q96F86 508 aaKnown RBP23.17■■□□□ 1.3
SMPD3-203ENST00000563226 ZNF594Q96JF6 807 aaPredicted RBP23.17■■□□□ 1.3
SMPD3-203ENST00000563226 UPF3BQ9BZI7 483 aaKnown RBP23.17■■□□□ 1.3
SMPD3-203ENST00000563226 FAM227BQ96M60 508 aa23.16■■□□□ 1.3
SMPD3-203ENST00000563226 DBNDD2Q9BQY9 259 aa23.16■■□□□ 1.3
SMPD3-203ENST00000563226 SLIT2O94813 1529 aa23.16■■□□□ 1.3
SMPD3-203ENST00000563226 ANKRD36CQ5JPF3 1778 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 PTH1RQ03431 593 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 TRIM28Q13263 835 aaKnown RBP23.15■■□□□ 1.3
SMPD3-203ENST00000563226 ZGPATQ8N5A5 531 aaKnown RBP23.15■■□□□ 1.3
SMPD3-203ENST00000563226 MARCH10Q8NA82 808 aaPredicted RBP23.15■■□□□ 1.3
SMPD3-203ENST00000563226 ACSBG1Q96GR2 724 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 TOM1O60784 492 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 NMIQ13287 307 aaPredicted RBP23.15■■□□□ 1.3
SMPD3-203ENST00000563226 RUFY2Q8WXA3 655 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 FAM89AQ96GI7 184 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 SNX14Q9Y5W7 946 aa23.15■■□□□ 1.3
SMPD3-203ENST00000563226 A0A0G2JS52 829 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 SSFA2P28290 1259 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 LRRC24Q50LG9 513 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 GIGYF2Q6Y7W6 1299 aaKnown RBP23.14■■□□□ 1.29
SMPD3-203ENST00000563226 KIAA1211Q6ZU35 1233 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 RASEFQ8IZ41 740 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 NDUFB9Q9Y6M9 179 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 NUP98P52948 1817 aa23.14■■□□□ 1.29
SMPD3-203ENST00000563226 ATP5JP18859 108 aa23.13■■□□□ 1.29
SMPD3-203ENST00000563226 FSD1Q9BTV5 496 aa23.13■■□□□ 1.29
SMPD3-203ENST00000563226 CCDC9Q9Y3X0 531 aaKnown RBP23.13■■□□□ 1.29
SMPD3-203ENST00000563226 GPTP24298 496 aa23.13■■□□□ 1.29
SMPD3-203ENST00000563226 TMX3Q96JJ7 454 aa23.13■■□□□ 1.29
SMPD3-203ENST00000563226 NOL8Q76FK4 1167 aaKnown RBP23.12■■□□□ 1.29
SMPD3-203ENST00000563226 SYNE4Q8N205 404 aa23.12■■□□□ 1.29
SMPD3-203ENST00000563226 A0A0D9SFI3 127 aa23.12■■□□□ 1.29
SMPD3-203ENST00000563226 PCCAP05165 728 aaPredicted RBP23.12■■□□□ 1.29
SMPD3-203ENST00000563226 PUS3Q9BZE2 481 aaKnown RBP23.12■■□□□ 1.29
SMPD3-203ENST00000563226 CCDC85AQ96PX6 553 aaPredicted RBP23.11■■□□□ 1.29
SMPD3-203ENST00000563226 EYA2O00167 538 aa23.1■■□□□ 1.29
SMPD3-203ENST00000563226 ZBTB38Q8NAP3 1195 aaPredicted RBP23.1■■□□□ 1.29
SMPD3-203ENST00000563226 IL15P40933 162 aaPredicted RBP23.1■■□□□ 1.29
SMPD3-203ENST00000563226 PKP1Q13835 747 aa23.1■■□□□ 1.29
SMPD3-203ENST00000563226 NLRP10Q86W26 655 aa23.1■■□□□ 1.29
SMPD3-203ENST00000563226 CCDC171Q6TFL3 1326 aa23.1■■□□□ 1.29
SMPD3-203ENST00000563226 HIP1O00291 1037 aa23.09■■□□□ 1.29
SMPD3-203ENST00000563226 MCM2P49736 904 aa23.09■■□□□ 1.29
SMPD3-203ENST00000563226 ZNF609O15014 1411 aa23.09■■□□□ 1.29
SMPD3-203ENST00000563226 TIMM10P62072 90 aa23.09■■□□□ 1.29
SMPD3-203ENST00000563226 TBC1D2BQ9UPU7 963 aa23.09■■□□□ 1.29
SMPD3-203ENST00000563226 BARGINQ6ZT62 677 aa23.08■■□□□ 1.29
SMPD3-203ENST00000563226 DNAJC2Q99543 621 aaKnown RBP23.08■■□□□ 1.29
SMPD3-203ENST00000563226 PLA2G12BQ9BX93 195 aa23.08■■□□□ 1.29
SMPD3-203ENST00000563226 SNRKQ9NRH2 765 aa23.08■■□□□ 1.29
SMPD3-203ENST00000563226 MED23Q9ULK4 1368 aa23.08■■□□□ 1.28
SMPD3-203ENST00000563226 CHGBP05060 677 aa23.07■■□□□ 1.28
SMPD3-203ENST00000563226 IL6STP40189 918 aaPredicted RBP23.07■■□□□ 1.28
SMPD3-203ENST00000563226 PRPF40BQ6NWY9 871 aaKnown RBP23.07■■□□□ 1.28
SMPD3-203ENST00000563226 NEUROD6Q96NK8 337 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms