RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 KSR2Q6VAB6 950 aa29.94■■■□□ 2.38
SMPD3-202ENST00000561749 ISCA1Q9BUE6 129 aa29.94■■■□□ 2.38
SMPD3-202ENST00000561749 UTP14AQ9BVJ6 771 aaKnown RBP29.94■■■□□ 2.38
SMPD3-202ENST00000561749 FKBP5Q13451 457 aaPredicted RBP29.93■■■□□ 2.38
SMPD3-202ENST00000561749 BCS1LQ9Y276 419 aa29.93■■■□□ 2.38
SMPD3-202ENST00000561749 ZBED9Q6R2W3 1325 aa29.93■■■□□ 2.38
SMPD3-202ENST00000561749 H0YIN7 160 aa29.92■■■□□ 2.38
SMPD3-202ENST00000561749 METTL22Q9BUU2 404 aaPredicted RBP29.92■■■□□ 2.38
SMPD3-202ENST00000561749 PIM2Q9P1W9 311 aa29.92■■■□□ 2.38
SMPD3-202ENST00000561749 ARFGEF1Q9Y6D6 1849 aa29.92■■■□□ 2.38
SMPD3-202ENST00000561749 LAMB2P55268 1798 aa29.91■■■□□ 2.38
SMPD3-202ENST00000561749 BCL2L13Q9BXK5 485 aa29.91■■■□□ 2.38
SMPD3-202ENST00000561749 SYNE4Q8N205 404 aa29.9■■■□□ 2.38
SMPD3-202ENST00000561749 ZNF622Q969S3 477 aaKnown RBP eCLIP29.9■■■□□ 2.38
SMPD3-202ENST00000561749 TRMT112Q9UI30 125 aaKnown RBP29.9■■■□□ 2.38
SMPD3-202ENST00000561749 SSH1Q8WYL5 1049 aa29.89■■■□□ 2.38
SMPD3-202ENST00000561749 DDX60Q8IY21 1712 aaKnown RBP29.88■■■□□ 2.37
SMPD3-202ENST00000561749 MRPL50Q8N5N7 158 aaKnown RBP29.88■■■□□ 2.37
SMPD3-202ENST00000561749 DALRD3Q5D0E6 543 aaKnown RBP29.87■■■□□ 2.37
SMPD3-202ENST00000561749 RTL5Q5HYW3 569 aaPredicted RBP29.87■■■□□ 2.37
SMPD3-202ENST00000561749 CHD4Q14839 1912 aa29.86■■■□□ 2.37
SMPD3-202ENST00000561749 F6X3S4 739 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 SRGNP10124 158 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 TRIM28Q13263 835 aaKnown RBP29.85■■■□□ 2.37
SMPD3-202ENST00000561749 DNAAF4Q8WXU2 420 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 FAM89AQ96GI7 184 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 PDZRN3Q9UPQ7 1066 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 SH3TC1Q8TE82 1336 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 SLX4Q8IY92 1834 aa29.85■■■□□ 2.37
SMPD3-202ENST00000561749 IGKV5-2P06315 115 aa29.84■■■□□ 2.37
SMPD3-202ENST00000561749 HCLS1P14317 486 aaPredicted RBP29.84■■■□□ 2.37
SMPD3-202ENST00000561749 NEXNQ0ZGT2 675 aa29.84■■■□□ 2.37
SMPD3-202ENST00000561749 C3orf67Q6ZVT6 689 aa29.84■■■□□ 2.37
SMPD3-202ENST00000561749 RIC1Q4ADV7 1423 aa29.84■■■□□ 2.37
SMPD3-202ENST00000561749 RNF123Q5XPI4 1314 aa29.83■■■□□ 2.37
SMPD3-202ENST00000561749 CWF19L2Q2TBE0 894 aaKnown RBP29.83■■■□□ 2.37
SMPD3-202ENST00000561749 TTLL6Q8N841 843 aa29.83■■■□□ 2.37
SMPD3-202ENST00000561749 JARID2Q92833 1246 aaPredicted RBP29.83■■■□□ 2.37
SMPD3-202ENST00000561749 SMC4Q9NTJ3 1288 aa29.83■■■□□ 2.37
SMPD3-202ENST00000561749 KLRG2A4D1S0 409 aaPredicted RBP29.82■■■□□ 2.36
SMPD3-202ENST00000561749 GRIN3BO60391 1043 aa29.82■■■□□ 2.36
SMPD3-202ENST00000561749 CT47B1P0C2W7 299 aaPredicted RBP29.82■■■□□ 2.36
SMPD3-202ENST00000561749 CCDC191Q8NCU4 936 aa29.82■■■□□ 2.36
SMPD3-202ENST00000561749 MASTLQ96GX5 879 aa29.82■■■□□ 2.36
SMPD3-202ENST00000561749 CWC25Q9NXE8 425 aaPredicted RBP29.82■■■□□ 2.36
SMPD3-202ENST00000561749 ALDH1L2Q3SY69 923 aa29.81■■■□□ 2.36
SMPD3-202ENST00000561749 SLC10A5Q5PT55 438 aa29.81■■■□□ 2.36
SMPD3-202ENST00000561749 STYK1Q6J9G0 422 aa29.81■■■□□ 2.36
SMPD3-202ENST00000561749 NPR1P16066 1061 aa29.8■■■□□ 2.36
SMPD3-202ENST00000561749 ZNF219Q9P2Y4 722 aaPredicted RBP29.8■■■□□ 2.36
SMPD3-202ENST00000561749 NEURL1BA8MQ27 555 aa29.79■■■□□ 2.36
SMPD3-202ENST00000561749 NLRP3Q96P20 1036 aa29.79■■■□□ 2.36
SMPD3-202ENST00000561749 TAF1P21675 1872 aa29.78■■■□□ 2.36
SMPD3-202ENST00000561749 CRY2Q49AN0 593 aa29.78■■■□□ 2.36
SMPD3-202ENST00000561749 RPGRQ92834 1020 aaKnown RBP29.78■■■□□ 2.36
SMPD3-202ENST00000561749 CNKSR1Q969H4 720 aa29.78■■■□□ 2.36
SMPD3-202ENST00000561749 RARSP54136 660 aaKnown RBP29.77■■■□□ 2.36
SMPD3-202ENST00000561749 ZBTB38Q8NAP3 1195 aaPredicted RBP29.77■■■□□ 2.36
SMPD3-202ENST00000561749 PCCAP05165 728 aaPredicted RBP29.76■■■□□ 2.35
SMPD3-202ENST00000561749 PRPF40BQ6NWY9 871 aaKnown RBP29.76■■■□□ 2.35
SMPD3-202ENST00000561749 SLC4A10Q6U841 1118 aa29.76■■■□□ 2.35
SMPD3-202ENST00000561749 ARHGAP27Q6ZUM4 889 aa29.76■■■□□ 2.35
SMPD3-202ENST00000561749 IRS4O14654 1257 aaPredicted RBP29.75■■■□□ 2.35
SMPD3-202ENST00000561749 LINS1Q8NG48 757 aa29.75■■■□□ 2.35
SMPD3-202ENST00000561749 MYH3P11055 1940 aa29.74■■■□□ 2.35
SMPD3-202ENST00000561749 C21orf2O43822 256 aa29.73■■■□□ 2.35
SMPD3-202ENST00000561749 BEND3Q5T5X7 828 aa29.73■■■□□ 2.35
SMPD3-202ENST00000561749 PTPRCP08575 1304 aa29.72■■■□□ 2.35
SMPD3-202ENST00000561749 GCKRQ14397 625 aa29.72■■■□□ 2.35
SMPD3-202ENST00000561749 RBM17Q96I25 401 aaKnown RBP29.72■■■□□ 2.35
SMPD3-202ENST00000561749 YTHDC1Q96MU7 727 aaKnown RBP29.72■■■□□ 2.35
SMPD3-202ENST00000561749 UBE3BQ7Z3V4 1068 aa29.71■■■□□ 2.35
SMPD3-202ENST00000561749 NOB1Q9ULX3 412 aaKnown RBP29.71■■■□□ 2.35
SMPD3-202ENST00000561749 CCDC88AQ3V6T2 1871 aa29.71■■■□□ 2.35
SMPD3-202ENST00000561749 ALDH1B1P30837 517 aa29.7■■■□□ 2.35
SMPD3-202ENST00000561749 HOXA10P31260 410 aaPredicted RBP29.7■■■□□ 2.35
SMPD3-202ENST00000561749 FER1L6Q2WGJ9 1857 aa29.7■■■□□ 2.34
SMPD3-202ENST00000561749 SBF1O95248 1867 aa29.69■■■□□ 2.34
SMPD3-202ENST00000561749 CDHR2Q9BYE9 1310 aa29.69■■■□□ 2.34
SMPD3-202ENST00000561749 BCAR3O75815 825 aa29.68■■■□□ 2.34
SMPD3-202ENST00000561749 OLFM4Q6UX06 510 aa29.68■■■□□ 2.34
SMPD3-202ENST00000561749 SRCIN1Q9C0H9 1055 aa29.68■■■□□ 2.34
SMPD3-202ENST00000561749 ABCC4O15439 1325 aa29.68■■■□□ 2.34
SMPD3-202ENST00000561749 H7C1W4 665 aa29.67■■■□□ 2.34
SMPD3-202ENST00000561749 SLC51AQ86UW1 340 aa29.67■■■□□ 2.34
SMPD3-202ENST00000561749 CRAMP1Q96RY5 1269 aa29.67■■■□□ 2.34
SMPD3-202ENST00000561749 GOLGB1Q14789 3259 aaKnown RBP29.67■■■□□ 2.34
SMPD3-202ENST00000561749 COL4A1P02462 1669 aa29.66■■■□□ 2.34
SMPD3-202ENST00000561749 PDE8AO60658 829 aa29.66■■■□□ 2.34
SMPD3-202ENST00000561749 RASSF7Q02833 373 aa29.66■■■□□ 2.34
SMPD3-202ENST00000561749 CCDC85AQ96PX6 553 aaPredicted RBP29.66■■■□□ 2.34
SMPD3-202ENST00000561749 YY1P25490 414 aa29.65■■■□□ 2.34
SMPD3-202ENST00000561749 BRPF1P55201 1214 aaPredicted RBP29.65■■■□□ 2.34
SMPD3-202ENST00000561749 SF3B3Q15393 1217 aaKnown RBP29.65■■■□□ 2.34
SMPD3-202ENST00000561749 DDX46Q7L014 1031 aaKnown RBP29.65■■■□□ 2.34
SMPD3-202ENST00000561749 ALDH1L1O75891 902 aa29.64■■■□□ 2.34
SMPD3-202ENST00000561749 HSP90B1P14625 803 aaKnown RBP29.64■■■□□ 2.34
SMPD3-202ENST00000561749 C7orf43Q8WVR3 580 aa29.64■■■□□ 2.34
SMPD3-202ENST00000561749 KIF16BQ96L93 1317 aa29.64■■■□□ 2.34
SMPD3-202ENST00000561749 PPEF1O14829 653 aaPredicted RBP29.63■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms