RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 DDX60Q8IY21 1712 aaKnown RBP17.89■□□□□ 0.45
TPM1-230ENST00000561266 TAF1P21675 1872 aa17.88■□□□□ 0.45
TPM1-230ENST00000561266 GRIN3BO60391 1043 aa17.88■□□□□ 0.45
TPM1-230ENST00000561266 PARP10Q53GL7 1025 aa17.88■□□□□ 0.45
TPM1-230ENST00000561266 DALRD3Q5D0E6 543 aaKnown RBP17.88■□□□□ 0.45
TPM1-230ENST00000561266 RIC3Q7Z5B4 369 aa17.88■□□□□ 0.45
TPM1-230ENST00000561266 SLC51AQ86UW1 340 aa17.88■□□□□ 0.45
TPM1-230ENST00000561266 SBF1O95248 1867 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 PI4KAP2A4QPH2 592 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 HSP90AB3PQ58FF7 597 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 PI4KAP1Q8N8J0 262 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 MYD88Q99836 296 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 UTP14AQ9BVJ6 771 aaKnown RBP17.87■□□□□ 0.45
TPM1-230ENST00000561266 STK31Q9BXU1 1019 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 NYXQ9GZU5 481 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 MAP3K2Q9Y2U5 619 aa17.87■□□□□ 0.45
TPM1-230ENST00000561266 HCLS1P14317 486 aaPredicted RBP17.86■□□□□ 0.45
TPM1-230ENST00000561266 GTF2E1P29083 439 aaPredicted RBP17.86■□□□□ 0.45
TPM1-230ENST00000561266 SLC10A5Q5PT55 438 aa17.86■□□□□ 0.45
TPM1-230ENST00000561266 KSR2Q6VAB6 950 aa17.86■□□□□ 0.45
TPM1-230ENST00000561266 PPP1R42Q7Z4L9 355 aa17.86■□□□□ 0.45
TPM1-230ENST00000561266 TTLL6Q8N841 843 aa17.86■□□□□ 0.45
TPM1-230ENST00000561266 JARID2Q92833 1246 aaPredicted RBP17.86■□□□□ 0.45
TPM1-230ENST00000561266 METTL22Q9BUU2 404 aaPredicted RBP17.86■□□□□ 0.45
TPM1-230ENST00000561266 CCDC88AQ3V6T2 1871 aa17.86■□□□□ 0.45
TPM1-230ENST00000561266 COL4A1P02462 1669 aa17.85■□□□□ 0.45
TPM1-230ENST00000561266 IGKV5-2P06315 115 aa17.85■□□□□ 0.45
TPM1-230ENST00000561266 YY1P25490 414 aa17.85■□□□□ 0.45
TPM1-230ENST00000561266 PRELPP51888 382 aa17.85■□□□□ 0.45
TPM1-230ENST00000561266 FLIIQ13045 1269 aa17.85■□□□□ 0.45
TPM1-230ENST00000561266 TRIM28Q13263 835 aaKnown RBP17.85■□□□□ 0.45
TPM1-230ENST00000561266 STYK1Q6J9G0 422 aa17.85■□□□□ 0.45
TPM1-230ENST00000561266 ZNF219Q9P2Y4 722 aaPredicted RBP17.85■□□□□ 0.45
TPM1-230ENST00000561266 RIC1Q4ADV7 1423 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 HNRNPUQ00839 825 aaKnown RBP eCLIP17.84■□□□□ 0.45
TPM1-230ENST00000561266 CRY2Q49AN0 593 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 RTL5Q5HYW3 569 aaPredicted RBP17.84■□□□□ 0.45
TPM1-230ENST00000561266 OLFM4Q6UX06 510 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 ARHGAP27Q6ZUM4 889 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 FAM89AQ96GI7 184 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 MASTLQ96GX5 879 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 TRMT112Q9UI30 125 aaKnown RBP17.84■□□□□ 0.45
TPM1-230ENST00000561266 FER1L6Q2WGJ9 1857 aa17.84■□□□□ 0.45
TPM1-230ENST00000561266 F6X3S4 739 aa17.83■□□□□ 0.44
TPM1-230ENST00000561266 CHMP4AQ9BY43 222 aa17.83■□□□□ 0.44
TPM1-230ENST00000561266 C21orf2O43822 256 aa17.82■□□□□ 0.44
TPM1-230ENST00000561266 NPR1P16066 1061 aa17.82■□□□□ 0.44
TPM1-230ENST00000561266 RASSF7Q02833 373 aa17.82■□□□□ 0.44
TPM1-230ENST00000561266 CWF19L2Q2TBE0 894 aaKnown RBP17.82■□□□□ 0.44
TPM1-230ENST00000561266 PRPF40BQ6NWY9 871 aaKnown RBP17.82■□□□□ 0.44
TPM1-230ENST00000561266 MRPL50Q8N5N7 158 aaKnown RBP17.82■□□□□ 0.44
TPM1-230ENST00000561266 C7orf43Q8WVR3 580 aa17.82■□□□□ 0.44
TPM1-230ENST00000561266 PDZRN3Q9UPQ7 1066 aa17.82■□□□□ 0.44
TPM1-230ENST00000561266 SH3TC1Q8TE82 1336 aa17.81■□□□□ 0.44
TPM1-230ENST00000561266 DDX58O95786 925 aaKnown RBP17.81■□□□□ 0.44
TPM1-230ENST00000561266 SSH1Q8WYL5 1049 aa17.81■□□□□ 0.44
TPM1-230ENST00000561266 BCL2L13Q9BXK5 485 aa17.81■□□□□ 0.44
TPM1-230ENST00000561266 NFKBIEO00221 500 aa17.8■□□□□ 0.44
TPM1-230ENST00000561266 FKBP5Q13451 457 aaPredicted RBP17.8■□□□□ 0.44
TPM1-230ENST00000561266 CNKSR1Q969H4 720 aa17.8■□□□□ 0.44
TPM1-230ENST00000561266 NEURL1BA8MQ27 555 aa17.79■□□□□ 0.44
TPM1-230ENST00000561266 HOXA10P31260 410 aaPredicted RBP17.79■□□□□ 0.44
TPM1-230ENST00000561266 CCDC191Q8NCU4 936 aa17.79■□□□□ 0.44
TPM1-230ENST00000561266 RNF123Q5XPI4 1314 aa17.78■□□□□ 0.44
TPM1-230ENST00000561266 ZBTB38Q8NAP3 1195 aaPredicted RBP17.78■□□□□ 0.44
TPM1-230ENST00000561266 DNAAF4Q8WXU2 420 aa17.78■□□□□ 0.44
TPM1-230ENST00000561266 NLRP3Q96P20 1036 aa17.78■□□□□ 0.44
TPM1-230ENST00000561266 CWC25Q9NXE8 425 aaPredicted RBP17.78■□□□□ 0.44
TPM1-230ENST00000561266 IRS4O14654 1257 aaPredicted RBP17.77■□□□□ 0.44
TPM1-230ENST00000561266 SNED1Q8TER0 1413 aa17.77■□□□□ 0.44
TPM1-230ENST00000561266 PCCAP05165 728 aaPredicted RBP17.76■□□□□ 0.43
TPM1-230ENST00000561266 ZNF784Q8NCA9 323 aaPredicted RBP17.76■□□□□ 0.43
TPM1-230ENST00000561266 CRAMP1Q96RY5 1269 aa17.76■□□□□ 0.43
TPM1-230ENST00000561266 ABCC4O15439 1325 aa17.75■□□□□ 0.43
TPM1-230ENST00000561266 CASP7P55210 303 aa17.75■□□□□ 0.43
TPM1-230ENST00000561266 BEND3Q5T5X7 828 aa17.75■□□□□ 0.43
TPM1-230ENST00000561266 C9orf131Q5VYM1 1079 aa17.75■□□□□ 0.43
TPM1-230ENST00000561266 RPGRQ92834 1020 aaKnown RBP17.75■□□□□ 0.43
TPM1-230ENST00000561266 MYH3P11055 1940 aa17.74■□□□□ 0.43
TPM1-230ENST00000561266 DICER1Q9UPY3 1922 aaKnown RBP17.74■□□□□ 0.43
TPM1-230ENST00000561266 H7C1W4 665 aa17.74■□□□□ 0.43
TPM1-230ENST00000561266 ALDH1B1P30837 517 aa17.74■□□□□ 0.43
TPM1-230ENST00000561266 GCKRQ14397 625 aa17.74■□□□□ 0.43
TPM1-230ENST00000561266 SF3B3Q15393 1217 aaKnown RBP17.74■□□□□ 0.43
TPM1-230ENST00000561266 RBM17Q96I25 401 aaKnown RBP17.74■□□□□ 0.43
TPM1-230ENST00000561266 NEXNQ0ZGT2 675 aa17.73■□□□□ 0.43
TPM1-230ENST00000561266 LINS1Q8NG48 757 aa17.73■□□□□ 0.43
TPM1-230ENST00000561266 ZBED9Q6R2W3 1325 aa17.72■□□□□ 0.43
TPM1-230ENST00000561266 RARSP54136 660 aaKnown RBP17.72■□□□□ 0.43
TPM1-230ENST00000561266 ALDH1L2Q3SY69 923 aa17.72■□□□□ 0.43
TPM1-230ENST00000561266 UBE3BQ7Z3V4 1068 aa17.72■□□□□ 0.43
TPM1-230ENST00000561266 CELF1Q92879 486 aaKnown RBP17.72■□□□□ 0.43
TPM1-230ENST00000561266 CCDC85AQ96PX6 553 aaPredicted RBP17.72■□□□□ 0.43
TPM1-230ENST00000561266 SEC31BQ9NQW1 1179 aa17.72■□□□□ 0.43
TPM1-230ENST00000561266 RNF181Q9P0P0 153 aa17.72■□□□□ 0.43
TPM1-230ENST00000561266 CDHR2Q9BYE9 1310 aa17.72■□□□□ 0.43
TPM1-230ENST00000561266 SMC4Q9NTJ3 1288 aa17.71■□□□□ 0.43
TPM1-230ENST00000561266 TIAM2Q8IVF5 1701 aa17.7■□□□□ 0.42
TPM1-230ENST00000561266 PPEF1O14829 653 aaPredicted RBP17.7■□□□□ 0.42
TPM1-230ENST00000561266 PDE8AO60658 829 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms