RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TRMT112Q9UI30 125 aaKnown RBP15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 JADE2Q9NQC1 790 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 ZPR1O75312 459 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 CYLC1P35663 651 aaPredicted RBP15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 TUBB4BP68371 445 aa15.16■□□□□ 0.02
CSPG4P11-201ENST00000560634 ACTN2P35609 894 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 FEZ1Q99689 392 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 SRRTQ9BXP5 876 aaKnown RBP15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 ARFGAP3Q9NP61 516 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC141Q6ZP82 1450 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 KIAA0753Q2KHM9 967 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 TTC22Q5TAA0 569 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 CCDC155Q8N6L0 562 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 PDE4BQ07343 736 aa15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 TEX13AQ9BXU3 409 aaPredicted RBP15.15■□□□□ 0.02
CSPG4P11-201ENST00000560634 HSF2BPO75031 334 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 ZSCAN22P10073 491 aaPredicted RBP15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 METAP2P50579 478 aaKnown RBP eCLIP15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 ARHGAP45Q92619 1136 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 NSD2O96028 1365 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 PRPF4BQ13523 1007 aaKnown RBP15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 KCNG4Q8TDN1 519 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 POGZQ7Z3K3 1410 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 WDHD1O75717 1129 aaPredicted RBP15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 RBM25P49756 843 aaKnown RBP15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 WDR97A6NE52 1622 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 PRXQ9BXM0 1461 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 HCLS1P14317 486 aaPredicted RBP15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 SYKP43405 635 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 FAM200AQ8TCP9 573 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 ANKIB1Q9P2G1 1089 aa15.14■□□□□ 0.01
CSPG4P11-201ENST00000560634 NUTM2BA6NNL0 878 aaPredicted RBP15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 NUTM2EB1AL46 878 aaPredicted RBP15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 IVLP07476 585 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 TICAM2Q86XR7 235 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 NUTM2AQ8IVF1 878 aaPredicted RBP15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 TMTC2Q8N394 836 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 BICRAQ9NZM4 1560 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 ZSCAN23Q3MJ62 389 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 MFSD6Q6ZSS7 791 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 SPATA24Q86W54 205 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 TTC21BQ7Z4L5 1316 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 CTAGE15A4D2H0 777 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 BAG3O95817 575 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 CTAGE8P0CG41 777 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 UBASH3AP57075 661 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 CTAGE6Q86UF2 777 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 CTAGE4Q8IX94 777 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 TRIM47Q96LD4 638 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 TIGD1Q96MW7 591 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 PRC1O43663 620 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 CLCN1P35523 988 aa15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 HDAC1Q13547 482 aaPredicted RBP15.13■□□□□ 0.01
CSPG4P11-201ENST00000560634 ZFYP08048 801 aaPredicted RBP15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 TRAF1Q13077 416 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 FERMT2Q96AC1 680 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 FBF1Q8TES7 1133 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 IKBKGQ9Y6K9 419 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 NAIPQ13075 1403 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 HSPA4P34932 840 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 TMX3Q96JJ7 454 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 KAT14Q9H8E8 782 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 SPAG5Q96R06 1193 aa15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 CDC5LQ99459 802 aaKnown RBP15.12■□□□□ 0.01
CSPG4P11-201ENST00000560634 UQCRFS1P1P0C7P4 283 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 SKILP12757 684 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 PRPHP41219 470 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 SPTY2D1Q68D10 685 aaPredicted RBP15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 LDHAL6AQ6ZMR3 332 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 USP37Q86T82 979 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 MICU3Q86XE3 530 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 PIK3R4Q99570 1358 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 MYO1BO43795 1136 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 PANK2Q9BZ23 570 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 NSRP1Q9H0G5 558 aaKnown RBP15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 TSPY2A6NKD2 308 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 IBSPP21815 317 aaPredicted RBP15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 NOLC1Q14978 699 aaKnown RBP eCLIP15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 CCDC77Q9BR77 488 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 FERP16591 822 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 PPP1R42Q7Z4L9 355 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 TSNARE1Q96NA8 513 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 EXOC1Q9NV70 894 aa15.11■□□□□ 0.01
CSPG4P11-201ENST00000560634 TUBBP07437 444 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 MNAT1P51948 309 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 SYCP3Q8IZU3 236 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 ERMNQ8TAM6 284 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 SELENOOQ9BVL4 669 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 OPA1O60313 960 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 CCDC174Q6PII3 467 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 MRPS27Q92552 414 aaKnown RBP15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 SLC26A6Q9BXS9 759 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 MAPK8IP2Q13387 824 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 NME9Q86XW9 330 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 TRERF1Q96PN7 1200 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 GTPBP4Q9BZE4 634 aaKnown RBP15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 TMX1Q9H3N1 280 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 GIMAP6Q6P9H5 292 aa15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 DNMBPQ6XZF7 1577 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms