RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 TNRC6CQ9HCJ0 1690 aaKnown RBP17.09■□□□□ 0.33
SMAD3-213ENST00000560175 CACNA1SQ13698 1873 aa17.08■□□□□ 0.33
SMAD3-213ENST00000560175 FAM177BA6PVY3 158 aa17.08■□□□□ 0.32
SMAD3-213ENST00000560175 PRELPP51888 382 aa17.08■□□□□ 0.32
SMAD3-213ENST00000560175 NFKBIEO00221 500 aa17.07■□□□□ 0.32
SMAD3-213ENST00000560175 GTF2E1P29083 439 aaPredicted RBP17.07■□□□□ 0.32
SMAD3-213ENST00000560175 PRPF40BQ6NWY9 871 aaKnown RBP17.07■□□□□ 0.32
SMAD3-213ENST00000560175 UTP14AQ9BVJ6 771 aaKnown RBP17.07■□□□□ 0.32
SMAD3-213ENST00000560175 PHAXQ9H814 394 aaKnown RBP17.07■□□□□ 0.32
SMAD3-213ENST00000560175 SPINK5Q9NQ38 1064 aaPredicted RBP17.07■□□□□ 0.32
SMAD3-213ENST00000560175 DICER1Q9UPY3 1922 aaKnown RBP17.06■□□□□ 0.32
SMAD3-213ENST00000560175 LTBP3Q9NS15 1303 aa17.06■□□□□ 0.32
SMAD3-213ENST00000560175 FANCIQ9NVI1 1328 aa17.06■□□□□ 0.32
SMAD3-213ENST00000560175 ALDH1B1P30837 517 aa17.06■□□□□ 0.32
SMAD3-213ENST00000560175 TWISTNBQ3B726 338 aaPredicted RBP17.06■□□□□ 0.32
SMAD3-213ENST00000560175 C9orf131Q5VYM1 1079 aa17.06■□□□□ 0.32
SMAD3-213ENST00000560175 C21orf2O43822 256 aa17.05■□□□□ 0.32
SMAD3-213ENST00000560175 VAMP4O75379 141 aa17.05■□□□□ 0.32
SMAD3-213ENST00000560175 SOGA3Q5TF21 947 aa17.05■□□□□ 0.32
SMAD3-213ENST00000560175 SALL2Q9Y467 1007 aaPredicted RBP17.05■□□□□ 0.32
SMAD3-213ENST00000560175 ZC3H4Q9UPT8 1303 aaKnown RBP17.04■□□□□ 0.32
SMAD3-213ENST00000560175 LMNB1P20700 586 aa17.04■□□□□ 0.32
SMAD3-213ENST00000560175 CRAMP1Q96RY5 1269 aa17.04■□□□□ 0.32
SMAD3-213ENST00000560175 LAMB2P55268 1798 aa17.04■□□□□ 0.32
SMAD3-213ENST00000560175 SNED1Q8TER0 1413 aa17.04■□□□□ 0.32
SMAD3-213ENST00000560175 GOLGA2Q08379 1002 aa17.03■□□□□ 0.32
SMAD3-213ENST00000560175 C3orf67Q6ZVT6 689 aa17.03■□□□□ 0.32
SMAD3-213ENST00000560175 NLRP3Q96P20 1036 aa17.03■□□□□ 0.32
SMAD3-213ENST00000560175 RASSF7Q02833 373 aa17.02■□□□□ 0.32
SMAD3-213ENST00000560175 SYNE4Q8N205 404 aa17.02■□□□□ 0.32
SMAD3-213ENST00000560175 RNF181Q9P0P0 153 aa17.02■□□□□ 0.32
SMAD3-213ENST00000560175 TRMT112Q9UI30 125 aaKnown RBP17.02■□□□□ 0.32
SMAD3-213ENST00000560175 DDX60Q8IY21 1712 aaKnown RBP17.01■□□□□ 0.31
SMAD3-213ENST00000560175 SH3TC1Q8TE82 1336 aa17.01■□□□□ 0.31
SMAD3-213ENST00000560175 EXOSC9Q06265 439 aaKnown RBP17.01■□□□□ 0.31
SMAD3-213ENST00000560175 RIC3Q7Z5B4 369 aa17.01■□□□□ 0.31
SMAD3-213ENST00000560175 METTL22Q9BUU2 404 aaPredicted RBP17.01■□□□□ 0.31
SMAD3-213ENST00000560175 MYH16Q9H6N6 1097 aa17.01■□□□□ 0.31
SMAD3-213ENST00000560175 ATP5J2-PTCD1G3V325 749 aa17■□□□□ 0.31
SMAD3-213ENST00000560175 DDX58O95786 925 aaKnown RBP17■□□□□ 0.31
SMAD3-213ENST00000560175 SLC4A2P04920 1241 aa17■□□□□ 0.31
SMAD3-213ENST00000560175 CC2D2BQ6DHV5 1058 aa17■□□□□ 0.31
SMAD3-213ENST00000560175 KSR2Q6VAB6 950 aa17■□□□□ 0.31
SMAD3-213ENST00000560175 CCDC191Q8NCU4 936 aa17■□□□□ 0.31
SMAD3-213ENST00000560175 STK31Q9BXU1 1019 aa17■□□□□ 0.31
SMAD3-213ENST00000560175 GPBP1L1Q9HC44 474 aaPredicted RBP17■□□□□ 0.31
SMAD3-213ENST00000560175 GRIPAP1Q4V328 841 aa16.99■□□□□ 0.31
SMAD3-213ENST00000560175 CCDC93Q567U6 631 aa16.99■□□□□ 0.31
SMAD3-213ENST00000560175 G2E3Q7L622 706 aa16.99■□□□□ 0.31
SMAD3-213ENST00000560175 RTKN2Q8IZC4 609 aa16.99■□□□□ 0.31
SMAD3-213ENST00000560175 RBM17Q96I25 401 aaKnown RBP16.99■□□□□ 0.31
SMAD3-213ENST00000560175 PI4KAP2A4QPH2 592 aa16.98■□□□□ 0.31
SMAD3-213ENST00000560175 KIF3CO14782 793 aa16.98■□□□□ 0.31
SMAD3-213ENST00000560175 HCLS1P14317 486 aaPredicted RBP16.98■□□□□ 0.31
SMAD3-213ENST00000560175 SF3B3Q15393 1217 aaKnown RBP16.98■□□□□ 0.31
SMAD3-213ENST00000560175 PI4KAP1Q8N8J0 262 aa16.98■□□□□ 0.31
SMAD3-213ENST00000560175 ZBTB38Q8NAP3 1195 aaPredicted RBP16.98■□□□□ 0.31
SMAD3-213ENST00000560175 RPGRQ92834 1020 aaKnown RBP16.98■□□□□ 0.31
SMAD3-213ENST00000560175 TAOK3Q9H2K8 898 aa16.98■□□□□ 0.31
SMAD3-213ENST00000560175 ZNF219Q9P2Y4 722 aaPredicted RBP16.98■□□□□ 0.31
SMAD3-213ENST00000560175 C1QTNF8P60827 252 aa16.97■□□□□ 0.31
SMAD3-213ENST00000560175 FKBP4Q02790 459 aaKnown RBP eCLIP16.97■□□□□ 0.31
SMAD3-213ENST00000560175 TRMT2AQ8IZ69 625 aaKnown RBP16.97■□□□□ 0.31
SMAD3-213ENST00000560175 FAM89AQ96GI7 184 aa16.97■□□□□ 0.31
SMAD3-213ENST00000560175 PSMD1Q99460 953 aa16.97■□□□□ 0.31
SMAD3-213ENST00000560175 MAP3K2Q9Y2U5 619 aa16.97■□□□□ 0.31
SMAD3-213ENST00000560175 TIAM2Q8IVF5 1701 aa16.96■□□□□ 0.31
SMAD3-213ENST00000560175 TCERG1O14776 1098 aaKnown RBP16.96■□□□□ 0.31
SMAD3-213ENST00000560175 BBOX1O75936 387 aa16.96■□□□□ 0.31
SMAD3-213ENST00000560175 IGKV5-2P06315 115 aa16.96■□□□□ 0.31
SMAD3-213ENST00000560175 OLFM4Q6UX06 510 aa16.96■□□□□ 0.31
SMAD3-213ENST00000560175 MYD88Q99836 296 aa16.96■□□□□ 0.31
SMAD3-213ENST00000560175 TAF1P21675 1872 aa16.96■□□□□ 0.31
SMAD3-213ENST00000560175 GLTPD2A6NH11 291 aa16.95■□□□□ 0.3
SMAD3-213ENST00000560175 E9PSI1 815 aa16.95■□□□□ 0.3
SMAD3-213ENST00000560175 PCCAP05165 728 aaPredicted RBP16.95■□□□□ 0.3
SMAD3-213ENST00000560175 SLFN5Q08AF3 891 aa16.95■□□□□ 0.3
SMAD3-213ENST00000560175 FLIIQ13045 1269 aa16.95■□□□□ 0.3
SMAD3-213ENST00000560175 DIEXFQ68CQ4 756 aaKnown RBP16.95■□□□□ 0.3
SMAD3-213ENST00000560175 ABCC4O15439 1325 aa16.95■□□□□ 0.3
SMAD3-213ENST00000560175 IRS4O14654 1257 aaPredicted RBP16.94■□□□□ 0.3
SMAD3-213ENST00000560175 ZNF526Q8TF50 670 aaPredicted RBP16.94■□□□□ 0.3
SMAD3-213ENST00000560175 CWC25Q9NXE8 425 aaPredicted RBP16.94■□□□□ 0.3
SMAD3-213ENST00000560175 ATP6V0A2Q9Y487 856 aa16.94■□□□□ 0.3
SMAD3-213ENST00000560175 KDM2BQ8NHM5 1336 aa16.94■□□□□ 0.3
SMAD3-213ENST00000560175 SP8Q8IXZ3 490 aa16.93■□□□□ 0.3
SMAD3-213ENST00000560175 CDHR2Q9BYE9 1310 aa16.93■□□□□ 0.3
SMAD3-213ENST00000560175 PPEF1O14829 653 aaPredicted RBP16.92■□□□□ 0.3
SMAD3-213ENST00000560175 HSP90B1P14625 803 aaKnown RBP16.92■□□□□ 0.3
SMAD3-213ENST00000560175 GRAPQ13588 217 aa16.92■□□□□ 0.3
SMAD3-213ENST00000560175 DDX46Q7L014 1031 aaKnown RBP16.92■□□□□ 0.3
SMAD3-213ENST00000560175 TMC4Q7Z404 712 aa16.92■□□□□ 0.3
SMAD3-213ENST00000560175 MIER1Q8N108 512 aa16.92■□□□□ 0.3
SMAD3-213ENST00000560175 GRAPLQ8TC17 118 aaPredicted RBP16.92■□□□□ 0.3
SMAD3-213ENST00000560175 NMRK2Q9NPI5 230 aa16.92■□□□□ 0.3
SMAD3-213ENST00000560175 WDR90Q96KV7 1748 aa16.92■□□□□ 0.3
SMAD3-213ENST00000560175 LRRC37AA6NMS7 1700 aa16.91■□□□□ 0.3
SMAD3-213ENST00000560175 NEURL1BA8MQ27 555 aa16.91■□□□□ 0.3
SMAD3-213ENST00000560175 H7C1W4 665 aa16.91■□□□□ 0.3
SMAD3-213ENST00000560175 RTFDC1Q9BY42 306 aaPredicted RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms