RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 BCORQ6W2J9 1755 aa16.33■□□□□ 0.2
SNX1-209ENST00000559961 TCERG1O14776 1098 aaKnown RBP16.32■□□□□ 0.2
SNX1-209ENST00000559961 NTSR2O95665 410 aa16.32■□□□□ 0.2
SNX1-209ENST00000559961 ANXA1P04083 346 aa16.32■□□□□ 0.2
SNX1-209ENST00000559961 UBN2Q6ZU65 1347 aa16.32■□□□□ 0.2
SNX1-209ENST00000559961 CFAP44Q96MT7 982 aa16.32■□□□□ 0.2
SNX1-209ENST00000559961 TNRC6CQ9HCJ0 1690 aaKnown RBP16.32■□□□□ 0.2
SNX1-209ENST00000559961 DBF4Q9UBU7 674 aaPredicted RBP16.32■□□□□ 0.2
SNX1-209ENST00000559961 HACL1Q9UJ83 578 aa16.32■□□□□ 0.2
SNX1-209ENST00000559961 GNAI1P63096 354 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 TCIRG1Q13488 830 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 PDIA6Q15084 440 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 EAPPQ56P03 285 aaPredicted RBP16.31■□□□□ 0.2
SNX1-209ENST00000559961 DDX46Q7L014 1031 aaKnown RBP16.31■□□□□ 0.2
SNX1-209ENST00000559961 PNMA8AQ86V59 439 aaPredicted RBP16.31■□□□□ 0.2
SNX1-209ENST00000559961 LARGE2Q8N3Y3 721 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 SUPT20HQ8NEM7 779 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 HYPKQ9NX55 129 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 TRIM35Q9UPQ4 493 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 SBF1O95248 1867 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 ANKRD31Q8N7Z5 1873 aa16.31■□□□□ 0.2
SNX1-209ENST00000559961 BBOX1O75936 387 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 HSP90B1P14625 803 aaKnown RBP16.3■□□□□ 0.2
SNX1-209ENST00000559961 LMOD1P29536 600 aaPredicted RBP16.3■□□□□ 0.2
SNX1-209ENST00000559961 PROSER3Q2NL68 480 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 SLC10A5Q5PT55 438 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 OLFM4Q6UX06 510 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 ANKRD13DQ6ZTN6 518 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 LDHDQ86WU2 507 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 KDM3BQ7LBC6 1761 aa16.3■□□□□ 0.2
SNX1-209ENST00000559961 ABCC12Q96J65 1359 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 LAMB4A4D0S4 1761 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 SH3TC1Q8TE82 1336 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 POTECB2RU33 542 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 HTRA3P83110 453 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 NIM1KQ8IY84 436 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 GPC2Q8N158 579 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 L3MBTL3Q96JM7 780 aaPredicted RBP16.29■□□□□ 0.2
SNX1-209ENST00000559961 CHPF2Q9P2E5 772 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 GJA3Q9Y6H8 435 aa16.29■□□□□ 0.2
SNX1-209ENST00000559961 RIC1Q4ADV7 1423 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 DLG5Q8TDM6 1919 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 APAF1O14727 1248 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 DUSP27Q5VZP5 1158 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 NLRP10Q86W26 655 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 PLBD2Q8NHP8 589 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 VPS33BQ9H267 617 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 TAF1DQ9H5J8 278 aaPredicted RBP16.28■□□□□ 0.2
SNX1-209ENST00000559961 SLX4Q8IY92 1834 aa16.28■□□□□ 0.2
SNX1-209ENST00000559961 COL11A2P13942 1736 aaPredicted RBP16.28■□□□□ 0.2
SNX1-209ENST00000559961 FZD9O00144 591 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 GOLGA2Q08379 1002 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 IFFO2Q5TF58 517 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 TMC4Q7Z404 712 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 RIC3Q7Z5B4 369 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 IFT57Q9NWB7 429 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 ATP6V0A2Q9Y487 856 aa16.27■□□□□ 0.2
SNX1-209ENST00000559961 PPIP5K2O43314 1243 aa16.26■□□□□ 0.19
SNX1-209ENST00000559961 HCLS1P14317 486 aaPredicted RBP16.26■□□□□ 0.19
SNX1-209ENST00000559961 EPHX2P34913 555 aa16.26■□□□□ 0.19
SNX1-209ENST00000559961 KRT24Q2M2I5 525 aa16.26■□□□□ 0.19
SNX1-209ENST00000559961 DPP8Q6V1X1 898 aaPredicted RBP16.26■□□□□ 0.19
SNX1-209ENST00000559961 LRP10Q7Z4F1 713 aa16.26■□□□□ 0.19
SNX1-209ENST00000559961 ZNF541Q9H0D2 1346 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 DDX58O95786 925 aaKnown RBP16.25■□□□□ 0.19
SNX1-209ENST00000559961 SP8Q8IXZ3 490 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 MPNDQ8N594 471 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 JMYQ8N9B5 988 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 CREBZFQ9NS37 354 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 MBIPQ9NS73 344 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 TIAM2Q8IVF5 1701 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 FER1L6Q2WGJ9 1857 aa16.25■□□□□ 0.19
SNX1-209ENST00000559961 WDR90Q96KV7 1748 aa16.24■□□□□ 0.19
SNX1-209ENST00000559961 CEP350Q5VT06 3117 aa16.23■□□□□ 0.19
SNX1-209ENST00000559961 ABCC4O15439 1325 aa16.23■□□□□ 0.19
SNX1-209ENST00000559961 ELL2O00472 640 aaPredicted RBP16.23■□□□□ 0.19
SNX1-209ENST00000559961 GRAPQ13588 217 aa16.23■□□□□ 0.19
SNX1-209ENST00000559961 CCDC30Q5VVM6 783 aa16.23■□□□□ 0.19
SNX1-209ENST00000559961 GRAPLQ8TC17 118 aaPredicted RBP16.23■□□□□ 0.19
SNX1-209ENST00000559961 ATP5J2-PTCD1G3V325 749 aa16.22■□□□□ 0.19
SNX1-209ENST00000559961 C3orf67Q6ZVT6 689 aa16.22■□□□□ 0.19
SNX1-209ENST00000559961 CCDC88AQ3V6T2 1871 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 ANP32CO43423 234 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 POTEIP0CG38 1075 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 POTEJP0CG39 1038 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 TNIP1Q15025 636 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 AOC3Q16853 763 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 FAM89AQ96GI7 184 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 STK31Q9BXU1 1019 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 ZNRF3Q9ULT6 936 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 NUP98P52948 1817 aa16.21■□□□□ 0.19
SNX1-209ENST00000559961 TMEM88BA6NKF7 163 aa16.2■□□□□ 0.18
SNX1-209ENST00000559961 ZNF853P0CG23 659 aa16.2■□□□□ 0.18
SNX1-209ENST00000559961 CNTROBQ8N137 903 aa16.2■□□□□ 0.18
SNX1-209ENST00000559961 BCL2L13Q9BXK5 485 aa16.2■□□□□ 0.18
SNX1-209ENST00000559961 ARFGEF2Q9Y6D5 1785 aa16.2■□□□□ 0.18
SNX1-209ENST00000559961 G3V3G9 751 aa16.19■□□□□ 0.18
SNX1-209ENST00000559961 IRS4O14654 1257 aaPredicted RBP16.19■□□□□ 0.18
SNX1-209ENST00000559961 TRIM28Q13263 835 aaKnown RBP16.19■□□□□ 0.18
SNX1-209ENST00000559961 RTL5Q5HYW3 569 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms