RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ADGRL3Q9HAR2 1447 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 EPB41L2O43491 1005 aaKnown RBP15.46■□□□□ 0.07
LDLR-207ENST00000558013 GIMAP6Q6P9H5 292 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 RUFY2Q8WXA3 655 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 MTMR6Q9Y217 621 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 ZKSCAN5Q9Y2L8 839 aa15.46■□□□□ 0.07
LDLR-207ENST00000558013 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.46■□□□□ 0.07
LDLR-207ENST00000558013 ZNF496Q96IT1 587 aaPredicted RBP15.46■□□□□ 0.06
LDLR-207ENST00000558013 USP54Q70EL1 1684 aa15.45■□□□□ 0.06
LDLR-207ENST00000558013 FSD1Q9BTV5 496 aa15.45■□□□□ 0.06
LDLR-207ENST00000558013 ATP5J2-PTCD1G3V325 749 aa15.45■□□□□ 0.06
LDLR-207ENST00000558013 PTCD1O75127 700 aaKnown RBP15.45■□□□□ 0.06
LDLR-207ENST00000558013 GPATCH3Q96I76 525 aa15.45■□□□□ 0.06
LDLR-207ENST00000558013 SLC27A2O14975 620 aa15.44■□□□□ 0.06
LDLR-207ENST00000558013 STK3Q13188 491 aa15.44■□□□□ 0.06
LDLR-207ENST00000558013 VPS53Q5VIR6 699 aa15.44■□□□□ 0.06
LDLR-207ENST00000558013 SYAP1Q96A49 352 aaPredicted RBP15.44■□□□□ 0.06
LDLR-207ENST00000558013 NEURL1BA8MQ27 555 aa15.44■□□□□ 0.06
LDLR-207ENST00000558013 MAP4K1Q92918 833 aa15.44■□□□□ 0.06
LDLR-207ENST00000558013 CHD2O14647 1828 aaKnown RBP15.44■□□□□ 0.06
LDLR-207ENST00000558013 ERBB3P21860 1342 aa15.44■□□□□ 0.06
LDLR-207ENST00000558013 PTMAP06454 111 aaKnown RBP15.43■□□□□ 0.06
LDLR-207ENST00000558013 SLFNL1Q499Z3 407 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 ERC1Q8IUD2 1116 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 PLCB2Q00722 1185 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 GCKRQ14397 625 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 HSP90AA2PQ14568 343 aaPredicted RBP15.43■□□□□ 0.06
LDLR-207ENST00000558013 CHRNA2Q15822 529 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 HS1BP3Q53T59 392 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 LMO7Q8WWI1 1683 aa15.43■□□□□ 0.06
LDLR-207ENST00000558013 ZKSCAN1P17029 563 aaPredicted RBP15.43■□□□□ 0.06
LDLR-207ENST00000558013 RBM10P98175 930 aaKnown RBP15.43■□□□□ 0.06
LDLR-207ENST00000558013 C17orf53Q8N3J3 647 aaPredicted RBP15.43■□□□□ 0.06
LDLR-207ENST00000558013 DDX58O95786 925 aaKnown RBP15.42■□□□□ 0.06
LDLR-207ENST00000558013 CCDC129Q6ZRS4 1044 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 CDC37L1Q7L3B6 337 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 TMEM87AQ8NBN3 555 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 SEC62Q99442 399 aaKnown RBP15.42■□□□□ 0.06
LDLR-207ENST00000558013 ZNF500O60304 480 aaPredicted RBP15.42■□□□□ 0.06
LDLR-207ENST00000558013 UBE2HP62256 183 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 CCDC183Q5T5S1 534 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 RAPGEF4Q8WZA2 1011 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 CHMP4AQ9BY43 222 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 SLC52A2Q9HAB3 445 aa15.42■□□□□ 0.06
LDLR-207ENST00000558013 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.42■□□□□ 0.06
LDLR-207ENST00000558013 UBE3BQ7Z3V4 1068 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 PROSER2Q86WR7 435 aaPredicted RBP15.41■□□□□ 0.06
LDLR-207ENST00000558013 KCNB2Q92953 911 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 DBNLQ9UJU6 430 aaKnown RBP15.41■□□□□ 0.06
LDLR-207ENST00000558013 UTYO14607 1347 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 COL15A1P39059 1388 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 TFCP2Q12800 502 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 LARP1BQ659C4 914 aaKnown RBP15.41■□□□□ 0.06
LDLR-207ENST00000558013 CCDC39Q9UFE4 941 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 NPHP3Q7Z494 1330 aa15.41■□□□□ 0.06
LDLR-207ENST00000558013 KDM6AO15550 1401 aaPredicted RBP15.41■□□□□ 0.06
LDLR-207ENST00000558013 AP5Z1O43299 807 aa15.4■□□□□ 0.06
LDLR-207ENST00000558013 LARP1Q6PKG0 1096 aaKnown RBP15.4■□□□□ 0.06
LDLR-207ENST00000558013 TTC12Q9H892 705 aaPredicted RBP15.4■□□□□ 0.06
LDLR-207ENST00000558013 TFIP11Q9UBB9 837 aaKnown RBP15.4■□□□□ 0.06
LDLR-207ENST00000558013 CRYBG1Q9Y4K1 1723 aa15.4■□□□□ 0.06
LDLR-207ENST00000558013 TM6SF1Q9BZW5 370 aa15.4■□□□□ 0.06
LDLR-207ENST00000558013 PPFIA3O75145 1194 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 PHF14O94880 888 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 ADCY5O95622 1261 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 PHKG2P15735 406 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 NEXNQ0ZGT2 675 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 CAMK4Q16566 473 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.39■□□□□ 0.05
LDLR-207ENST00000558013 ANKRD13DQ6ZTN6 518 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 DNAJC2Q99543 621 aaKnown RBP15.39■□□□□ 0.05
LDLR-207ENST00000558013 TOB2Q14106 344 aaPredicted RBP15.39■□□□□ 0.05
LDLR-207ENST00000558013 TTC6Q86TZ1 520 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 LRRC2Q9BYS8 371 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 NPHP4O75161 1426 aaPredicted RBP15.39■□□□□ 0.05
LDLR-207ENST00000558013 CSB-PGBD3P0DP91 1061 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 PTPN12Q05209 780 aaKnown RBP15.39■□□□□ 0.05
LDLR-207ENST00000558013 LRP10Q7Z4F1 713 aa15.39■□□□□ 0.05
LDLR-207ENST00000558013 METTL22Q9BUU2 404 aaPredicted RBP15.39■□□□□ 0.05
LDLR-207ENST00000558013 NCAPD2Q15021 1401 aa15.38■□□□□ 0.05
LDLR-207ENST00000558013 RGPD5Q99666 1765 aa15.38■□□□□ 0.05
LDLR-207ENST00000558013 CYP27B1O15528 508 aa15.38■□□□□ 0.05
LDLR-207ENST00000558013 BLOC1S2Q6QNY1 142 aa15.38■□□□□ 0.05
LDLR-207ENST00000558013 DBNDD2Q9BQY9 259 aa15.38■□□□□ 0.05
LDLR-207ENST00000558013 DDX46Q7L014 1031 aaKnown RBP15.38■□□□□ 0.05
LDLR-207ENST00000558013 DDX11Q96FC9 970 aa15.38■□□□□ 0.05
LDLR-207ENST00000558013 ZSCAN31Q96LW9 406 aaPredicted RBP15.38■□□□□ 0.05
LDLR-207ENST00000558013 SH2B1Q9NRF2 756 aaPredicted RBP15.38■□□□□ 0.05
LDLR-207ENST00000558013 JAK2O60674 1132 aa15.37■□□□□ 0.05
LDLR-207ENST00000558013 TAF5LO75529 589 aa15.37■□□□□ 0.05
LDLR-207ENST00000558013 LIG1P18858 919 aa15.37■□□□□ 0.05
LDLR-207ENST00000558013 RFX5P48382 616 aaPredicted RBP15.37■□□□□ 0.05
LDLR-207ENST00000558013 TPM2P07951 284 aa15.37■□□□□ 0.05
LDLR-207ENST00000558013 A0A087WZG4 1122 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 RPS6KB1P23443 525 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 TNNI3KQ59H18 835 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 UBE2Q2Q8WVN8 375 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 FUCA2Q9BTY2 467 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 ATP6V1DQ9Y5K8 247 aa15.36■□□□□ 0.05
LDLR-207ENST00000558013 FPGT-TNNI3KV9GXZ4 949 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms