RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ALS2Q96Q42 1657 aa14.74□□□□□ -0.05
LDLR-205ENST00000557933 ARID5BQ14865 1188 aa14.73□□□□□ -0.05
LDLR-205ENST00000557933 BOLA2Q9H3K6 86 aa14.73□□□□□ -0.05
LDLR-205ENST00000557933 DACT1Q9NYF0 836 aa14.73□□□□□ -0.05
LDLR-205ENST00000557933 RAB11FIP3O75154 756 aa14.73□□□□□ -0.05
LDLR-205ENST00000557933 PROSER3Q2NL68 480 aa14.73□□□□□ -0.05
LDLR-205ENST00000557933 STAP2Q9UGK3 403 aa14.73□□□□□ -0.05
LDLR-205ENST00000557933 MPRIPQ6WCQ1 1025 aa14.72□□□□□ -0.05
LDLR-205ENST00000557933 MAP7D2Q96T17 732 aa14.72□□□□□ -0.05
LDLR-205ENST00000557933 FTOQ9C0B1 505 aaKnown RBP eCLIP14.72□□□□□ -0.05
LDLR-205ENST00000557933 TMEM94Q12767 1356 aa14.72□□□□□ -0.05
LDLR-205ENST00000557933 AACSQ86V21 672 aa14.72□□□□□ -0.05
LDLR-205ENST00000557933 SSH3Q8TE77 659 aa14.72□□□□□ -0.05
LDLR-205ENST00000557933 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.72□□□□□ -0.05
LDLR-205ENST00000557933 ANO6Q4KMQ2 910 aa14.72□□□□□ -0.05
LDLR-205ENST00000557933 JAK2O60674 1132 aa14.71□□□□□ -0.05
LDLR-205ENST00000557933 SLFNL1Q499Z3 407 aa14.71□□□□□ -0.05
LDLR-205ENST00000557933 TRIM5Q9C035 493 aa14.71□□□□□ -0.05
LDLR-205ENST00000557933 NAP1L2Q9ULW6 460 aaPredicted RBP14.71□□□□□ -0.05
LDLR-205ENST00000557933 GOLGA6L4A6NEF3 574 aa14.71□□□□□ -0.06
LDLR-205ENST00000557933 ZSCAN20P17040 1043 aaPredicted RBP14.71□□□□□ -0.06
LDLR-205ENST00000557933 HSPA2P54652 639 aa14.71□□□□□ -0.06
LDLR-205ENST00000557933 PDCL2Q8N4E4 241 aa14.71□□□□□ -0.06
LDLR-205ENST00000557933 LRRC59Q96AG4 307 aaKnown RBP14.71□□□□□ -0.06
LDLR-205ENST00000557933 DNAJC25Q9H1X3 360 aa14.71□□□□□ -0.06
LDLR-205ENST00000557933 SLIT3O75094 1523 aa14.71□□□□□ -0.06
LDLR-205ENST00000557933 LARP1Q6PKG0 1096 aaKnown RBP14.7□□□□□ -0.06
LDLR-205ENST00000557933 KIAA1524Q8TCG1 905 aa14.7□□□□□ -0.06
LDLR-205ENST00000557933 KIF1BPQ96EK5 621 aa14.7□□□□□ -0.06
LDLR-205ENST00000557933 C9orf78Q9NZ63 289 aaPredicted RBP14.7□□□□□ -0.06
LDLR-205ENST00000557933 RBM8AQ9Y5S9 174 aaKnown RBP14.7□□□□□ -0.06
LDLR-205ENST00000557933 MED1Q15648 1581 aaPredicted RBP14.7□□□□□ -0.06
LDLR-205ENST00000557933 IFIT2P09913 472 aaKnown RBP14.7□□□□□ -0.06
LDLR-205ENST00000557933 PROSER2Q86WR7 435 aaPredicted RBP14.7□□□□□ -0.06
LDLR-205ENST00000557933 FAM184AQ8NB25 1140 aa14.7□□□□□ -0.06
LDLR-205ENST00000557933 ZBTB9Q96C00 473 aa14.7□□□□□ -0.06
LDLR-205ENST00000557933 CYP46A1Q9Y6A2 500 aa14.7□□□□□ -0.06
LDLR-205ENST00000557933 ABCC6O95255 1503 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 FUCA2Q9BTY2 467 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 LTBP4Q8N2S1 1624 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 TYRO3Q06418 890 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 NMIQ13287 307 aaPredicted RBP14.69□□□□□ -0.06
LDLR-205ENST00000557933 ABTB2Q8N961 1025 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 BICD2Q8TD16 824 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 CRYBG1Q9Y4K1 1723 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 A0A0D9SFI3 127 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 LMOD2Q6P5Q4 547 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 NUP62CLQ9H1M0 184 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 RGPD1P0DJD0 1748 aa14.69□□□□□ -0.06
LDLR-205ENST00000557933 NHSL1Q5SYE7 1610 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 NR1I2O75469 434 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 CCDC192P0DO97 292 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 CCDC129Q6ZRS4 1044 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 CLASRPQ8N2M8 674 aaKnown RBP14.68□□□□□ -0.06
LDLR-205ENST00000557933 DNAAF4Q8WXU2 420 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 TNMDQ9H2S6 317 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 TRMT1Q9NXH9 659 aaKnown RBP14.68□□□□□ -0.06
LDLR-205ENST00000557933 MRVI1Q9Y6F6 885 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 GUCY1B3Q02153 619 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 ZNF589Q86UQ0 364 aaPredicted RBP14.68□□□□□ -0.06
LDLR-205ENST00000557933 CBX8Q9HC52 389 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 PEAK1Q9H792 1746 aa14.68□□□□□ -0.06
LDLR-205ENST00000557933 PHF8Q9UPP1 1060 aa14.67□□□□□ -0.06
LDLR-205ENST00000557933 CHAF1AQ13111 956 aaPredicted RBP14.67□□□□□ -0.06
LDLR-205ENST00000557933 CREB3L3Q68CJ9 461 aa14.67□□□□□ -0.06
LDLR-205ENST00000557933 CADPS2Q86UW7 1296 aa14.67□□□□□ -0.06
LDLR-205ENST00000557933 MAP3K2Q9Y2U5 619 aa14.67□□□□□ -0.06
LDLR-205ENST00000557933 MAP3K11Q16584 847 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 SEC62Q99442 399 aaKnown RBP14.66□□□□□ -0.06
LDLR-205ENST00000557933 FSD1Q9BTV5 496 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 NFAT5O94916 1531 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 USP27XA6NNY8 438 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 HOXC9P31274 260 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 UVSSAQ2YD98 709 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 CCDC144BQ3MJ40 725 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 FILIP1Q7Z7B0 1213 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 CCDC144CPQ8IYA2 1237 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 SPATA32Q96LK8 384 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 PRIMPOLQ96LW4 560 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 SBNO1A3KN83 1393 aa14.66□□□□□ -0.06
LDLR-205ENST00000557933 HMGN5P82970 282 aaKnown RBP14.65□□□□□ -0.06
LDLR-205ENST00000557933 BEND3Q5T5X7 828 aa14.65□□□□□ -0.06
LDLR-205ENST00000557933 SMAP1Q8IYB5 467 aaPredicted RBP14.65□□□□□ -0.06
LDLR-205ENST00000557933 EAF2Q96CJ1 260 aaPredicted RBP14.65□□□□□ -0.06
LDLR-205ENST00000557933 ZKSCAN1P17029 563 aaPredicted RBP14.65□□□□□ -0.06
LDLR-205ENST00000557933 KRT85P78386 507 aa14.65□□□□□ -0.06
LDLR-205ENST00000557933 TMEM87AQ8NBN3 555 aa14.65□□□□□ -0.06
LDLR-205ENST00000557933 ATP6V1DQ9Y5K8 247 aa14.65□□□□□ -0.06
LDLR-205ENST00000557933 FLT4P35916 1363 aa14.65□□□□□ -0.06
LDLR-205ENST00000557933 HSP90B1P14625 803 aaKnown RBP14.65□□□□□ -0.06
LDLR-205ENST00000557933 IGSF1Q8N6C5 1336 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 GLRX3O76003 335 aaKnown RBP14.64□□□□□ -0.07
LDLR-205ENST00000557933 MYL6BP14649 208 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 POLA2Q14181 598 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 CHST3Q7LGC8 479 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 ECHDC1Q9NTX5 307 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 SPTLC3Q9NUV7 552 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 USP16Q9Y5T5 823 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 CCDC171Q6TFL3 1326 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 PXDNQ92626 1479 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms