RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 PDE4AP27815 886 aa8.02□□□□□ -1.13
VPS33B-207ENST00000557470 DNAJC10Q8IXB1 793 aa8.02□□□□□ -1.13
VPS33B-207ENST00000557470 LARP6Q9BRS8 491 aaKnown RBP8.02□□□□□ -1.13
VPS33B-207ENST00000557470 POLR3GLQ9BT43 218 aa8.02□□□□□ -1.13
VPS33B-207ENST00000557470 SOS1Q07889 1333 aaPredicted RBP8.02□□□□□ -1.13
VPS33B-207ENST00000557470 GLTPD2A6NH11 291 aa8.01□□□□□ -1.13
VPS33B-207ENST00000557470 HSPA1AP0DMV8 641 aaKnown RBP8.01□□□□□ -1.13
VPS33B-207ENST00000557470 HSPA1BP0DMV9 641 aaKnown RBP8.01□□□□□ -1.13
VPS33B-207ENST00000557470 VEGFAP15692 232 aaPredicted RBP8.01□□□□□ -1.13
VPS33B-207ENST00000557470 LMNB1P20700 586 aa8.01□□□□□ -1.13
VPS33B-207ENST00000557470 NFIXQ14938 502 aa8.01□□□□□ -1.13
VPS33B-207ENST00000557470 NRXN2Q9P2S2 1712 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 COL15A1P39059 1388 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 CARMIL3Q8ND23 1372 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 NFKBIEO00221 500 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 CYP19A1P11511 503 aaPredicted RBP8□□□□□ -1.13
VPS33B-207ENST00000557470 SULT6B1Q6IMI4 303 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 TTLL6Q8N841 843 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 OXER1Q8TDS5 423 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 SLC52A2Q9HAB3 445 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 BCL2L12Q9HB09 334 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 NARFQ9UHQ1 456 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 AFDNP55196 1824 aaKnown RBP8□□□□□ -1.13
VPS33B-207ENST00000557470 TIAM2Q8IVF5 1701 aa8□□□□□ -1.13
VPS33B-207ENST00000557470 SCN11AQ9UI33 1791 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 DLEC1Q9Y238 1755 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 POTECB2RU33 542 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 SERPINB2P05120 415 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 SLC39A6Q13433 755 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 ANKRD13DQ6ZTN6 518 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 C2CD5Q86YS7 1000 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 PANK3Q9H999 370 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 LGR6Q9HBX8 967 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 ZBTB1Q9Y2K1 713 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 MRC1P22897 1456 aa7.99□□□□□ -1.13
VPS33B-207ENST00000557470 TBC1D12O60347 775 aa7.98□□□□□ -1.13
VPS33B-207ENST00000557470 IL13P35225 146 aa7.98□□□□□ -1.13
VPS33B-207ENST00000557470 LSM11P83369 360 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS33B-207ENST00000557470 AKAP4Q5JQC9 854 aa7.98□□□□□ -1.13
VPS33B-207ENST00000557470 MORC1Q86VD1 984 aa7.98□□□□□ -1.13
VPS33B-207ENST00000557470 DDX27Q96GQ7 796 aaKnown RBP7.98□□□□□ -1.13
VPS33B-207ENST00000557470 H0YIN7 160 aa7.97□□□□□ -1.13
VPS33B-207ENST00000557470 RNMTO43148 476 aaKnown RBP7.97□□□□□ -1.13
VPS33B-207ENST00000557470 MFSD10Q14728 455 aa7.97□□□□□ -1.13
VPS33B-207ENST00000557470 NEUROD2Q15784 382 aa7.97□□□□□ -1.13
VPS33B-207ENST00000557470 BICDL1Q6ZP65 573 aa7.97□□□□□ -1.13
VPS33B-207ENST00000557470 C21orf2O43822 256 aa7.96□□□□□ -1.14
VPS33B-207ENST00000557470 CANXP27824 592 aaKnown RBP7.96□□□□□ -1.14
VPS33B-207ENST00000557470 ERFEQ4G0M1 354 aa7.96□□□□□ -1.14
VPS33B-207ENST00000557470 CCDC88AQ3V6T2 1871 aa7.96□□□□□ -1.14
VPS33B-207ENST00000557470 COL11A2P13942 1736 aaPredicted RBP7.95□□□□□ -1.14
VPS33B-207ENST00000557470 HMOX1P09601 288 aa7.95□□□□□ -1.14
VPS33B-207ENST00000557470 EIF5P55010 431 aaKnown RBP7.95□□□□□ -1.14
VPS33B-207ENST00000557470 TBC1D9BQ66K14 1250 aa7.95□□□□□ -1.14
VPS33B-207ENST00000557470 CCDC24Q8N4L8 307 aa7.95□□□□□ -1.14
VPS33B-207ENST00000557470 ZNF622Q969S3 477 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS33B-207ENST00000557470 MKRN1Q9UHC7 482 aaKnown RBP7.95□□□□□ -1.14
VPS33B-207ENST00000557470 ANKRD31Q8N7Z5 1873 aa7.95□□□□□ -1.14
VPS33B-207ENST00000557470 UBR2Q8IWV8 1755 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 HSPA5P11021 654 aaKnown RBP7.94□□□□□ -1.14
VPS33B-207ENST00000557470 PDE6BP35913 854 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 PBX2P40425 430 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 MTHFSDQ2M296 383 aaKnown RBP7.94□□□□□ -1.14
VPS33B-207ENST00000557470 PRR5LQ6MZQ0 368 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 BRIP1Q9BX63 1249 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 TAOK3Q9H2K8 898 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 EMILIN3Q9NT22 766 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 SCN7AQ01118 1682 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 LTBP3Q9NS15 1303 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 FER1L6Q2WGJ9 1857 aa7.94□□□□□ -1.14
VPS33B-207ENST00000557470 A0A087WZG4 1122 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 FOXN1O15353 648 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 DDNO94850 711 aaPredicted RBP7.93□□□□□ -1.14
VPS33B-207ENST00000557470 STARD3NLO95772 234 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 PSEN2P49810 448 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 EIF4G2P78344 907 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS33B-207ENST00000557470 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS33B-207ENST00000557470 ZMYND15Q9H091 742 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 RSPH6AQ9H0K4 717 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 PDZRN3Q9UPQ7 1066 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 TBC1D2BQ9UPU7 963 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 ZNF330Q9Y3S2 320 aaPredicted RBP7.93□□□□□ -1.14
VPS33B-207ENST00000557470 KNSTRNQ9Y448 316 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 VIRMAQ69YN4 1812 aaKnown RBP7.93□□□□□ -1.14
VPS33B-207ENST00000557470 CNTNAP1P78357 1384 aa7.93□□□□□ -1.14
VPS33B-207ENST00000557470 DICER1Q9UPY3 1922 aaKnown RBP7.93□□□□□ -1.14
VPS33B-207ENST00000557470 ARHGAP33O14559 1287 aa7.92□□□□□ -1.14
VPS33B-207ENST00000557470 DMRTA1Q5VZB9 504 aa7.92□□□□□ -1.14
VPS33B-207ENST00000557470 PRPF40BQ6NWY9 871 aaKnown RBP7.92□□□□□ -1.14
VPS33B-207ENST00000557470 TTC5Q8N0Z6 440 aa7.92□□□□□ -1.14
VPS33B-207ENST00000557470 CNBD1Q8NA66 436 aa7.92□□□□□ -1.14
VPS33B-207ENST00000557470 ZNF496Q96IT1 587 aaPredicted RBP7.92□□□□□ -1.14
VPS33B-207ENST00000557470 PASKQ96RG2 1323 aa7.92□□□□□ -1.14
VPS33B-207ENST00000557470 SLX4Q8IY92 1834 aa7.92□□□□□ -1.14
VPS33B-207ENST00000557470 CAMTA2O94983 1202 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 SRGNP10124 158 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 VEGFBP49765 207 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 PPP4R3BQ5MIZ7 849 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 STYK1Q6J9G0 422 aa7.91□□□□□ -1.14
VPS33B-207ENST00000557470 ZNF790Q6PG37 636 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms