RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NUTM1Q86Y26 1132 aa16.26■□□□□ 0.19
SHMT2-227ENST00000557269 CCDC191Q8NCU4 936 aa16.26■□□□□ 0.19
SHMT2-227ENST00000557269 UTP14AQ9BVJ6 771 aaKnown RBP16.26■□□□□ 0.19
SHMT2-227ENST00000557269 SRCIN1Q9C0H9 1055 aa16.26■□□□□ 0.19
SHMT2-227ENST00000557269 CWC25Q9NXE8 425 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-227ENST00000557269 AFDNP55196 1824 aaKnown RBP16.26■□□□□ 0.19
SHMT2-227ENST00000557269 PXDNLA1KZ92 1463 aa16.25■□□□□ 0.19
SHMT2-227ENST00000557269 RRP1P56182 461 aaKnown RBP16.25■□□□□ 0.19
SHMT2-227ENST00000557269 GCKRQ14397 625 aa16.25■□□□□ 0.19
SHMT2-227ENST00000557269 ERFEQ4G0M1 354 aa16.25■□□□□ 0.19
SHMT2-227ENST00000557269 RTL5Q5HYW3 569 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-227ENST00000557269 INTS3Q68E01 1043 aaKnown RBP16.25■□□□□ 0.19
SHMT2-227ENST00000557269 DZIP1LQ8IYY4 767 aaKnown RBP16.25■□□□□ 0.19
SHMT2-227ENST00000557269 TMEM57Q8N5G2 664 aa16.25■□□□□ 0.19
SHMT2-227ENST00000557269 TRMT112Q9UI30 125 aaKnown RBP16.25■□□□□ 0.19
SHMT2-227ENST00000557269 SUPT16HQ9Y5B9 1047 aaKnown RBP16.25■□□□□ 0.19
SHMT2-227ENST00000557269 NRXN2Q9P2S2 1712 aa16.25■□□□□ 0.19
SHMT2-227ENST00000557269 RNF123Q5XPI4 1314 aa16.24■□□□□ 0.19
SHMT2-227ENST00000557269 ALDH1L1O75891 902 aa16.24■□□□□ 0.19
SHMT2-227ENST00000557269 PPP1R42Q7Z4L9 355 aa16.24■□□□□ 0.19
SHMT2-227ENST00000557269 FAM89AQ96GI7 184 aa16.24■□□□□ 0.19
SHMT2-227ENST00000557269 ABCC12Q96J65 1359 aa16.24■□□□□ 0.19
SHMT2-227ENST00000557269 H7C1W4 665 aa16.23■□□□□ 0.19
SHMT2-227ENST00000557269 CCT4P50991 539 aaKnown RBP16.23■□□□□ 0.19
SHMT2-227ENST00000557269 TPTE2Q6XPS3 522 aa16.23■□□□□ 0.19
SHMT2-227ENST00000557269 CNBD1Q8NA66 436 aa16.23■□□□□ 0.19
SHMT2-227ENST00000557269 IBTKQ9P2D0 1353 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-227ENST00000557269 PCCAP05165 728 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-227ENST00000557269 CASP7P55210 303 aa16.22■□□□□ 0.19
SHMT2-227ENST00000557269 C3orf67Q6ZVT6 689 aa16.22■□□□□ 0.19
SHMT2-227ENST00000557269 FTSJ3Q8IY81 847 aaKnown RBP16.22■□□□□ 0.19
SHMT2-227ENST00000557269 ZBTB38Q8NAP3 1195 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-227ENST00000557269 NYXQ9GZU5 481 aa16.22■□□□□ 0.19
SHMT2-227ENST00000557269 USP44Q9H0E7 712 aa16.22■□□□□ 0.19
SHMT2-227ENST00000557269 N4BP2Q86UW6 1770 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-227ENST00000557269 GRM8O00222 908 aa16.21■□□□□ 0.19
SHMT2-227ENST00000557269 NBPF7P0C2Y1 421 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-227ENST00000557269 HCLS1P14317 486 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-227ENST00000557269 UBE3BQ7Z3V4 1068 aa16.21■□□□□ 0.19
SHMT2-227ENST00000557269 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-227ENST00000557269 SH3TC1Q8TE82 1336 aa16.2■□□□□ 0.18
SHMT2-227ENST00000557269 C10orf71Q711Q0 1435 aa16.2■□□□□ 0.18
SHMT2-227ENST00000557269 NPHP1O15259 732 aa16.2■□□□□ 0.18
SHMT2-227ENST00000557269 GTF2E1P29083 439 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-227ENST00000557269 SLC10A5Q5PT55 438 aa16.2■□□□□ 0.18
SHMT2-227ENST00000557269 COG6Q9Y2V7 657 aa16.2■□□□□ 0.18
SHMT2-227ENST00000557269 UTYO14607 1347 aa16.19■□□□□ 0.18
SHMT2-227ENST00000557269 ANKRD31Q8N7Z5 1873 aa16.19■□□□□ 0.18
SHMT2-227ENST00000557269 TNRC6CQ9HCJ0 1690 aaKnown RBP16.19■□□□□ 0.18
SHMT2-227ENST00000557269 IRS4O14654 1257 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-227ENST00000557269 PDE3AQ14432 1141 aa16.19■□□□□ 0.18
SHMT2-227ENST00000557269 ITPRIPQ8IWB1 547 aa16.19■□□□□ 0.18
SHMT2-227ENST00000557269 MEIS3Q99687 375 aa16.19■□□□□ 0.18
SHMT2-227ENST00000557269 C9orf78Q9NZ63 289 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-227ENST00000557269 ST5P78524 1137 aa16.18■□□□□ 0.18
SHMT2-227ENST00000557269 KLHL34Q8N239 644 aa16.18■□□□□ 0.18
SHMT2-227ENST00000557269 KAZALD1Q96I82 304 aa16.18■□□□□ 0.18
SHMT2-227ENST00000557269 BRIP1Q9BX63 1249 aa16.18■□□□□ 0.18
SHMT2-227ENST00000557269 PPP1R1BQ9UD71 204 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-227ENST00000557269 CDHR2Q9BYE9 1310 aa16.18■□□□□ 0.18
SHMT2-227ENST00000557269 DDX60Q8IY21 1712 aaKnown RBP16.17■□□□□ 0.18
SHMT2-227ENST00000557269 LRP5O75197 1615 aa16.17■□□□□ 0.18
SHMT2-227ENST00000557269 ZBTB7BO15156 539 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-227ENST00000557269 CENPBP07199 599 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-227ENST00000557269 MS4A1P11836 297 aa16.17■□□□□ 0.18
SHMT2-227ENST00000557269 MVPQ14764 893 aaKnown RBP16.17■□□□□ 0.18
SHMT2-227ENST00000557269 EPHA10Q5JZY3 1008 aa16.17■□□□□ 0.18
SHMT2-227ENST00000557269 SUCLG2Q96I99 432 aa16.17■□□□□ 0.18
SHMT2-227ENST00000557269 KLRG2A4D1S0 409 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-227ENST00000557269 CHRNA5P30532 468 aa16.16■□□□□ 0.18
SHMT2-227ENST00000557269 FOXO4P98177 505 aa16.16■□□□□ 0.18
SHMT2-227ENST00000557269 FHDC1Q9C0D6 1143 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-227ENST00000557269 CD2APQ9Y5K6 639 aa16.16■□□□□ 0.18
SHMT2-227ENST00000557269 KIF13BQ9NQT8 1826 aa16.16■□□□□ 0.18
SHMT2-227ENST00000557269 RIC1Q4ADV7 1423 aa16.15■□□□□ 0.18
SHMT2-227ENST00000557269 NLGN2Q8NFZ4 835 aa16.15■□□□□ 0.18
SHMT2-227ENST00000557269 CRBNQ96SW2 442 aa16.15■□□□□ 0.18
SHMT2-227ENST00000557269 KIAA1551Q9HCM1 1747 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 A0A0G2JLW4 131 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 PDE8AO60658 829 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 DPEP1P16444 411 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 PDE6BP35913 854 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 IRX6P78412 446 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-227ENST00000557269 CRY2Q49AN0 593 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 C2CD5Q86YS7 1000 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 CCDC85AQ96PX6 553 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-227ENST00000557269 PLA2G12BQ9BX93 195 aa16.14■□□□□ 0.17
SHMT2-227ENST00000557269 LAMB2P55268 1798 aa16.13■□□□□ 0.17
SHMT2-227ENST00000557269 UBTFL1P0CB47 393 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-227ENST00000557269 KCNA3P22001 575 aa16.13■□□□□ 0.17
SHMT2-227ENST00000557269 CTSWP56202 376 aa16.13■□□□□ 0.17
SHMT2-227ENST00000557269 ANKRD44Q8N8A2 993 aa16.13■□□□□ 0.17
SHMT2-227ENST00000557269 NLRP3Q96P20 1036 aa16.13■□□□□ 0.17
SHMT2-227ENST00000557269 SYT17Q9BSW7 474 aa16.13■□□□□ 0.17
SHMT2-227ENST00000557269 BICC1Q9H694 974 aaKnown RBP16.13■□□□□ 0.17
SHMT2-227ENST00000557269 LRRFIP2Q9Y608 721 aaKnown RBP16.13■□□□□ 0.17
SHMT2-227ENST00000557269 COL11A2P13942 1736 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-227ENST00000557269 SRGNP10124 158 aa16.12■□□□□ 0.17
SHMT2-227ENST00000557269 SF3B3Q15393 1217 aaKnown RBP16.12■□□□□ 0.17
SHMT2-227ENST00000557269 TTLL11Q8NHH1 800 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms