RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 GPATCH3Q96I76 525 aa7.21□□□□□ -1.26
SYNE2-225ENST00000557060 FAM227BQ96M60 508 aa7.21□□□□□ -1.26
SYNE2-225ENST00000557060 VIRMAQ69YN4 1812 aaKnown RBP7.21□□□□□ -1.26
SYNE2-225ENST00000557060 SALL3Q9BXA9 1300 aa7.21□□□□□ -1.26
SYNE2-225ENST00000557060 STARD3NLO95772 234 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 PKP1Q13835 747 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 KIF6Q6ZMV9 814 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 HDAC5Q9UQL6 1122 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 ST18O60284 1047 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 GLRX3O76003 335 aaKnown RBP7.2□□□□□ -1.26
SYNE2-225ENST00000557060 LRRC24Q50LG9 513 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 DDX46Q7L014 1031 aaKnown RBP7.2□□□□□ -1.26
SYNE2-225ENST00000557060 TCEANC2Q96MN5 208 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 SLC4A9Q96Q91 983 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 DBNDD2Q9BQY9 259 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 PUS3Q9BZE2 481 aaKnown RBP7.2□□□□□ -1.26
SYNE2-225ENST00000557060 TOM1O60784 492 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 PTPN12Q05209 780 aaKnown RBP7.2□□□□□ -1.26
SYNE2-225ENST00000557060 RABEP1Q15276 862 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 ERC1Q8IUD2 1116 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 SNRKQ9NRH2 765 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 CHMP5Q9NZZ3 219 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 STAP2Q9UGK3 403 aa7.2□□□□□ -1.26
SYNE2-225ENST00000557060 PXDNLA1KZ92 1463 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 MCCP23508 829 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 ATP6V1AP38606 617 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 SAMD1Q6SPF0 538 aaPredicted RBP7.19□□□□□ -1.26
SYNE2-225ENST00000557060 C5P01031 1676 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 SSFA2P28290 1259 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 PRPF40BQ6NWY9 871 aaKnown RBP7.19□□□□□ -1.26
SYNE2-225ENST00000557060 BICDL1Q6ZP65 573 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 PTF1AQ7RTS3 328 aa7.19□□□□□ -1.26
SYNE2-225ENST00000557060 DBNLQ9UJU6 430 aaKnown RBP7.19□□□□□ -1.26
SYNE2-225ENST00000557060 SRCAPQ6ZRS2 3230 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 FKBP4Q02790 459 aaKnown RBP eCLIP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 MTX1Q13505 466 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 NKX1-1Q15270 411 aaPredicted RBP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 CCDC57Q2TAC2 916 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 GORABQ5T7V8 394 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 TAOK2Q9UL54 1235 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 PTH1RQ03431 593 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 GSE1Q14687 1217 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 HSP90AB3PQ58FF7 597 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 CCDC129Q6ZRS4 1044 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 RASEFQ8IZ41 740 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 MARCH10Q8NA82 808 aaPredicted RBP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 TNPO1Q92973 898 aaKnown RBP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 TRMT112Q9UI30 125 aaKnown RBP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 SCN11AQ9UI33 1791 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 TNNI3KQ59H18 835 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 CCDC24Q8N4L8 307 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 HELBQ8NG08 1087 aaPredicted RBP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 SEC62Q99442 399 aaKnown RBP7.18□□□□□ -1.26
SYNE2-225ENST00000557060 FPGT-TNNI3KV9GXZ4 949 aa7.18□□□□□ -1.26
SYNE2-225ENST00000557060 CACNA1FO60840 1977 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 UTRNP46939 3433 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 SNAP23O00161 211 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 GOLIM4O00461 696 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 HCLS1P14317 486 aaPredicted RBP7.17□□□□□ -1.26
SYNE2-225ENST00000557060 NCLP19338 710 aaKnown RBP7.17□□□□□ -1.26
SYNE2-225ENST00000557060 NMIQ13287 307 aaPredicted RBP7.17□□□□□ -1.26
SYNE2-225ENST00000557060 DZIP3Q86Y13 1208 aaKnown RBP7.17□□□□□ -1.26
SYNE2-225ENST00000557060 SNX21Q969T3 373 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 ROBO1Q9Y6N7 1651 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 A0A0D9SFI3 127 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 SPDYE4A6NLX3 237 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 SGSM2O43147 1006 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 CASTP20810 708 aaKnown RBP7.17□□□□□ -1.26
SYNE2-225ENST00000557060 MCM4P33991 863 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 FOXO4P98177 505 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 TCIRG1Q13488 830 aa7.17□□□□□ -1.26
SYNE2-225ENST00000557060 PPFIA3O75145 1194 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 COL9A3Q14050 684 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 PI16Q6UXB8 463 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 H7C1W4 665 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 CYP19A1P11511 503 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 RFX5P48382 616 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 ADCK5Q3MIX3 580 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 MEX3CQ5U5Q3 659 aaKnown RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 ZNF589Q86UQ0 364 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 CCDC191Q8NCU4 936 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 EVI5LQ96CN4 794 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 TMX3Q96JJ7 454 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 JAKMIP1Q96N16 626 aaKnown RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 UTYO14607 1347 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 TTC41PQ6P2S7 1318 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 SPATA31A1Q5TZJ5 1347 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 IFIT5Q13325 482 aaKnown RBP7.16□□□□□ -1.26
SYNE2-225ENST00000557060 LDHAL6AQ6ZMR3 332 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 GREM2Q9H772 168 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 COPRSQ9NQ92 184 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 CNNM1Q9NRU3 951 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 TAF6LQ9Y6J9 622 aa7.16□□□□□ -1.26
SYNE2-225ENST00000557060 LOC102724428A0A0B4J2F2 783 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 A0A1B0GUL7 405 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 ADORA1P30542 326 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 CASP7P55210 303 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 SIK1P57059 783 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 MCTP1Q6DN14 999 aa7.15□□□□□ -1.26
SYNE2-225ENST00000557060 RUFY2Q8WXA3 655 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms