RNA–Protein interactions for RNA: ENST00000556975.5

TMEM260-214, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-214ENST00000556975 TNRC6CQ9HCJ0 1690 aaKnown RBP29.47■■■□□ 2.31
TMEM260-214ENST00000556975 ANP32CO43423 234 aa29.46■■■□□ 2.31
TMEM260-214ENST00000556975 HOXA10P31260 410 aaPredicted RBP29.46■■■□□ 2.31
TMEM260-214ENST00000556975 CCDC93Q567U6 631 aa29.46■■■□□ 2.31
TMEM260-214ENST00000556975 SLC10A5Q5PT55 438 aa29.45■■■□□ 2.31
TMEM260-214ENST00000556975 RRAGCQ9HB90 399 aa29.45■■■□□ 2.31
TMEM260-214ENST00000556975 TCIRG1Q13488 830 aa29.44■■■□□ 2.3
TMEM260-214ENST00000556975 UTP14AQ9BVJ6 771 aaKnown RBP29.44■■■□□ 2.3
TMEM260-214ENST00000556975 RNF123Q5XPI4 1314 aa29.44■■■□□ 2.3
TMEM260-214ENST00000556975 TIAM2Q8IVF5 1701 aa29.43■■■□□ 2.3
TMEM260-214ENST00000556975 CCDC27Q2M243 656 aa29.43■■■□□ 2.3
TMEM260-214ENST00000556975 NCBP3Q53F19 620 aaKnown RBP29.42■■■□□ 2.3
TMEM260-214ENST00000556975 RTKN2Q8IZC4 609 aa29.42■■■□□ 2.3
TMEM260-214ENST00000556975 RBM46Q8TBY0 533 aaKnown RBP29.42■■■□□ 2.3
TMEM260-214ENST00000556975 HYPKQ9NX55 129 aa29.42■■■□□ 2.3
TMEM260-214ENST00000556975 ANKRD36CQ5JPF3 1778 aa29.41■■■□□ 2.3
TMEM260-214ENST00000556975 DPY19L2Q6NUT2 758 aa29.41■■■□□ 2.3
TMEM260-214ENST00000556975 NLRP10Q86W26 655 aa29.41■■■□□ 2.3
TMEM260-214ENST00000556975 C16orf71Q8IYS4 520 aaPredicted RBP29.41■■■□□ 2.3
TMEM260-214ENST00000556975 PLBD2Q8NHP8 589 aa29.41■■■□□ 2.3
TMEM260-214ENST00000556975 MRS2Q9HD23 443 aa29.41■■■□□ 2.3
TMEM260-214ENST00000556975 FKBP4Q02790 459 aaKnown RBP eCLIP29.4■■■□□ 2.3
TMEM260-214ENST00000556975 ANKRD13DQ6ZTN6 518 aa29.4■■■□□ 2.3
TMEM260-214ENST00000556975 RPGRQ92834 1020 aaKnown RBP29.4■■■□□ 2.3
TMEM260-214ENST00000556975 NLRP3Q96P20 1036 aa29.4■■■□□ 2.3
TMEM260-214ENST00000556975 CRAMP1Q96RY5 1269 aa29.4■■■□□ 2.3
TMEM260-214ENST00000556975 APLP1P51693 650 aa29.39■■■□□ 2.3
TMEM260-214ENST00000556975 VEGFAP15692 232 aaPredicted RBP29.38■■■□□ 2.29
TMEM260-214ENST00000556975 CC2D2BQ6DHV5 1058 aa29.38■■■□□ 2.29
TMEM260-214ENST00000556975 OLFM4Q6UX06 510 aa29.38■■■□□ 2.29
TMEM260-214ENST00000556975 RBM17Q96I25 401 aaKnown RBP29.38■■■□□ 2.29
TMEM260-214ENST00000556975 IFFO2Q5TF58 517 aa29.37■■■□□ 2.29
TMEM260-214ENST00000556975 C3orf67Q6ZVT6 689 aa29.37■■■□□ 2.29
TMEM260-214ENST00000556975 SNED1Q8TER0 1413 aa29.37■■■□□ 2.29
TMEM260-214ENST00000556975 WWC1Q8IX03 1113 aa29.36■■■□□ 2.29
TMEM260-214ENST00000556975 C8orf58Q8NAV2 365 aa29.36■■■□□ 2.29
TMEM260-214ENST00000556975 CHMP4AQ9BY43 222 aa29.36■■■□□ 2.29
TMEM260-214ENST00000556975 ELL2O00472 640 aaPredicted RBP29.35■■■□□ 2.29
TMEM260-214ENST00000556975 FSTL1Q12841 308 aa29.35■■■□□ 2.29
TMEM260-214ENST00000556975 GRIPAP1Q4V328 841 aa29.35■■■□□ 2.29
TMEM260-214ENST00000556975 ISCA1Q9BUE6 129 aa29.35■■■□□ 2.29
TMEM260-214ENST00000556975 PSMD1Q99460 953 aa29.34■■■□□ 2.29
TMEM260-214ENST00000556975 TRMT112Q9UI30 125 aaKnown RBP29.34■■■□□ 2.29
TMEM260-214ENST00000556975 WDR90Q96KV7 1748 aa29.34■■■□□ 2.29
TMEM260-214ENST00000556975 POTECB2RU33 542 aa29.33■■■□□ 2.29
TMEM260-214ENST00000556975 SH3TC1Q8TE82 1336 aa29.33■■■□□ 2.29
TMEM260-214ENST00000556975 TRIM28Q13263 835 aaKnown RBP29.32■■■□□ 2.28
TMEM260-214ENST00000556975 SYNE4Q8N205 404 aa29.32■■■□□ 2.28
TMEM260-214ENST00000556975 ZNF277Q9NRM2 450 aaPredicted RBP29.32■■■□□ 2.28
TMEM260-214ENST00000556975 IL16Q14005 1332 aa29.3■■■□□ 2.28
TMEM260-214ENST00000556975 HCLS1P14317 486 aaPredicted RBP29.3■■■□□ 2.28
TMEM260-214ENST00000556975 PHAXQ9H814 394 aaKnown RBP29.3■■■□□ 2.28
TMEM260-214ENST00000556975 PPEF1O14829 653 aaPredicted RBP29.29■■■□□ 2.28
TMEM260-214ENST00000556975 IARSP41252 1262 aaKnown RBP29.29■■■□□ 2.28
TMEM260-214ENST00000556975 CCDC30Q5VVM6 783 aa29.29■■■□□ 2.28
TMEM260-214ENST00000556975 DDNO94850 711 aaPredicted RBP29.28■■■□□ 2.28
TMEM260-214ENST00000556975 TSPYL6Q8N831 410 aa29.28■■■□□ 2.28
TMEM260-214ENST00000556975 SMC1BQ8NDV3 1235 aa29.28■■■□□ 2.28
TMEM260-214ENST00000556975 GOLGA2Q08379 1002 aa29.27■■■□□ 2.28
TMEM260-214ENST00000556975 TSR2Q969E8 191 aaKnown RBP29.27■■■□□ 2.28
TMEM260-214ENST00000556975 LAMB2P55268 1798 aa29.26■■■□□ 2.28
TMEM260-214ENST00000556975 ABCC4O15439 1325 aa29.26■■■□□ 2.27
TMEM260-214ENST00000556975 ATP5J2-PTCD1G3V325 749 aa29.26■■■□□ 2.27
TMEM260-214ENST00000556975 BBOX1O75936 387 aa29.26■■■□□ 2.27
TMEM260-214ENST00000556975 RIC3Q7Z5B4 369 aa29.26■■■□□ 2.27
TMEM260-214ENST00000556975 ATP6V0A2Q9Y487 856 aa29.26■■■□□ 2.27
TMEM260-214ENST00000556975 FZD9O00144 591 aa29.25■■■□□ 2.27
TMEM260-214ENST00000556975 DNAJC5GQ8N7S2 189 aa29.24■■■□□ 2.27
TMEM260-214ENST00000556975 L3MBTL3Q96JM7 780 aaPredicted RBP29.24■■■□□ 2.27
TMEM260-214ENST00000556975 HTRA3P83110 453 aa29.23■■■□□ 2.27
TMEM260-214ENST00000556975 DDX46Q7L014 1031 aaKnown RBP29.23■■■□□ 2.27
TMEM260-214ENST00000556975 WDR63Q8IWG1 891 aa29.23■■■□□ 2.27
TMEM260-214ENST00000556975 FAM89AQ96GI7 184 aa29.23■■■□□ 2.27
TMEM260-214ENST00000556975 TCERG1O14776 1098 aaKnown RBP29.22■■■□□ 2.27
TMEM260-214ENST00000556975 SF3B3Q15393 1217 aaKnown RBP29.22■■■□□ 2.27
TMEM260-214ENST00000556975 SP8Q8IXZ3 490 aa29.22■■■□□ 2.27
TMEM260-214ENST00000556975 TMX4Q9H1E5 349 aaPredicted RBP29.22■■■□□ 2.27
TMEM260-214ENST00000556975 DDX58O95786 925 aaKnown RBP29.21■■■□□ 2.27
TMEM260-214ENST00000556975 GRAPQ13588 217 aa29.21■■■□□ 2.27
TMEM260-214ENST00000556975 GRAPLQ8TC17 118 aaPredicted RBP29.21■■■□□ 2.27
TMEM260-214ENST00000556975 JDP2Q8WYK2 163 aa29.21■■■□□ 2.27
TMEM260-214ENST00000556975 DDX60Q8IY21 1712 aaKnown RBP29.2■■■□□ 2.27
TMEM260-214ENST00000556975 TWISTNBQ3B726 338 aaPredicted RBP29.2■■■□□ 2.26
TMEM260-214ENST00000556975 SLC51AQ86UW1 340 aa29.2■■■□□ 2.26
TMEM260-214ENST00000556975 ZNF428Q96B54 188 aa29.2■■■□□ 2.26
TMEM260-214ENST00000556975 VPS33BQ9H267 617 aa29.2■■■□□ 2.26
TMEM260-214ENST00000556975 ZNF541Q9H0D2 1346 aa29.2■■■□□ 2.26
TMEM260-214ENST00000556975 IQCA1LA6NCM1 817 aa29.19■■■□□ 2.26
TMEM260-214ENST00000556975 ZBTB38Q8NAP3 1195 aaPredicted RBP29.19■■■□□ 2.26
TMEM260-214ENST00000556975 CCDC191Q8NCU4 936 aa29.19■■■□□ 2.26
TMEM260-214ENST00000556975 SCN4AP35499 1836 aa29.18■■■□□ 2.26
TMEM260-214ENST00000556975 TMC4Q7Z404 712 aa29.18■■■□□ 2.26
TMEM260-214ENST00000556975 MYD88Q99836 296 aa29.18■■■□□ 2.26
TMEM260-214ENST00000556975 METTL22Q9BUU2 404 aaPredicted RBP29.18■■■□□ 2.26
TMEM260-214ENST00000556975 STK31Q9BXU1 1019 aa29.18■■■□□ 2.26
TMEM260-214ENST00000556975 RTFDC1Q9BY42 306 aaPredicted RBP29.18■■■□□ 2.26
TMEM260-214ENST00000556975 IRS4O14654 1257 aaPredicted RBP29.17■■■□□ 2.26
TMEM260-214ENST00000556975 KSR2Q6VAB6 950 aa29.16■■■□□ 2.26
TMEM260-214ENST00000556975 LARGE2Q8N3Y3 721 aa29.16■■■□□ 2.26
TMEM260-214ENST00000556975 COL4A5P29400 1685 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms