RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 SLC10A5Q5PT55 438 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 STYK1Q6J9G0 422 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 KSR2Q6VAB6 950 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 NUTM1Q86Y26 1132 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 CDCA7LQ96GN5 454 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 ISCA1Q9BUE6 129 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 COL11A2P13942 1736 aaPredicted RBP13.7□□□□□ -0.22
LINC00239-201ENST00000556973 UTRNP46939 3433 aa13.7□□□□□ -0.22
LINC00239-201ENST00000556973 YY1P25490 414 aa13.69□□□□□ -0.22
LINC00239-201ENST00000556973 CNKSR1Q969H4 720 aa13.69□□□□□ -0.22
LINC00239-201ENST00000556973 TRMT112Q9UI30 125 aaKnown RBP13.69□□□□□ -0.22
LINC00239-201ENST00000556973 RIC1Q4ADV7 1423 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 GOLGB1Q14789 3259 aaKnown RBP13.68□□□□□ -0.22
LINC00239-201ENST00000556973 PI4KAP2A4QPH2 592 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 ATP5J2-PTCD1G3V325 749 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 NPR1P16066 1061 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 ARHGAP27Q6ZUM4 889 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 G2E3Q7L622 706 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 PI4KAP1Q8N8J0 262 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 NLRP3Q96P20 1036 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 METTL22Q9BUU2 404 aaPredicted RBP13.68□□□□□ -0.22
LINC00239-201ENST00000556973 MAP3K2Q9Y2U5 619 aa13.68□□□□□ -0.22
LINC00239-201ENST00000556973 CACNA1SQ13698 1873 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 SH3TC1Q8TE82 1336 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 ALDH1B1P30837 517 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 FLIIQ13045 1269 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 CRY2Q49AN0 593 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 CCDC191Q8NCU4 936 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 ZNF428Q96B54 188 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 MYD88Q99836 296 aa13.67□□□□□ -0.22
LINC00239-201ENST00000556973 HNRNPUQ00839 825 aaKnown RBP eCLIP13.66□□□□□ -0.22
LINC00239-201ENST00000556973 NEXNQ0ZGT2 675 aa13.66□□□□□ -0.22
LINC00239-201ENST00000556973 FKBP5Q13451 457 aaPredicted RBP13.66□□□□□ -0.22
LINC00239-201ENST00000556973 ABCC12Q96J65 1359 aa13.66□□□□□ -0.22
LINC00239-201ENST00000556973 TNRC6CQ9HCJ0 1690 aaKnown RBP13.66□□□□□ -0.22
LINC00239-201ENST00000556973 SLX4Q8IY92 1834 aa13.65□□□□□ -0.22
LINC00239-201ENST00000556973 HOXA10P31260 410 aaPredicted RBP13.65□□□□□ -0.22
LINC00239-201ENST00000556973 ZBTB38Q8NAP3 1195 aaPredicted RBP13.65□□□□□ -0.22
LINC00239-201ENST00000556973 RPGRQ92834 1020 aaKnown RBP13.65□□□□□ -0.22
LINC00239-201ENST00000556973 FAM89AQ96GI7 184 aa13.65□□□□□ -0.22
LINC00239-201ENST00000556973 ADCY9O60503 1353 aa13.65□□□□□ -0.22
LINC00239-201ENST00000556973 LAMB2P55268 1798 aa13.64□□□□□ -0.23
LINC00239-201ENST00000556973 CT47B1P0C2W7 299 aaPredicted RBP13.64□□□□□ -0.23
LINC00239-201ENST00000556973 HSP90B1P14625 803 aaKnown RBP13.64□□□□□ -0.23
LINC00239-201ENST00000556973 SOGA3Q5TF21 947 aa13.64□□□□□ -0.23
LINC00239-201ENST00000556973 PRPF40BQ6NWY9 871 aaKnown RBP13.64□□□□□ -0.23
LINC00239-201ENST00000556973 SYNE4Q8N205 404 aa13.64□□□□□ -0.23
LINC00239-201ENST00000556973 RBM17Q96I25 401 aaKnown RBP13.64□□□□□ -0.23
LINC00239-201ENST00000556973 CWC25Q9NXE8 425 aaPredicted RBP13.64□□□□□ -0.23
LINC00239-201ENST00000556973 DDX60Q8IY21 1712 aaKnown RBP13.64□□□□□ -0.23
LINC00239-201ENST00000556973 C21orf2O43822 256 aa13.63□□□□□ -0.23
LINC00239-201ENST00000556973 IGKV5-2P06315 115 aa13.63□□□□□ -0.23
LINC00239-201ENST00000556973 HCLS1P14317 486 aaPredicted RBP13.63□□□□□ -0.23
LINC00239-201ENST00000556973 ALDH1L2Q3SY69 923 aa13.63□□□□□ -0.23
LINC00239-201ENST00000556973 DNAAF4Q8WXU2 420 aa13.63□□□□□ -0.23
LINC00239-201ENST00000556973 CRAMP1Q96RY5 1269 aa13.63□□□□□ -0.23
LINC00239-201ENST00000556973 SBF1O95248 1867 aa13.63□□□□□ -0.23
LINC00239-201ENST00000556973 PCCAP05165 728 aaPredicted RBP13.62□□□□□ -0.23
LINC00239-201ENST00000556973 C3orf67Q6ZVT6 689 aa13.62□□□□□ -0.23
LINC00239-201ENST00000556973 MRPL50Q8N5N7 158 aaKnown RBP13.62□□□□□ -0.23
LINC00239-201ENST00000556973 C7orf43Q8WVR3 580 aa13.62□□□□□ -0.23
LINC00239-201ENST00000556973 ZNF219Q9P2Y4 722 aaPredicted RBP13.62□□□□□ -0.23
LINC00239-201ENST00000556973 FER1L6Q2WGJ9 1857 aa13.61□□□□□ -0.23
LINC00239-201ENST00000556973 NEURL1BA8MQ27 555 aa13.61□□□□□ -0.23
LINC00239-201ENST00000556973 IRS4O14654 1257 aaPredicted RBP13.61□□□□□ -0.23
LINC00239-201ENST00000556973 SF3B3Q15393 1217 aaKnown RBP13.61□□□□□ -0.23
LINC00239-201ENST00000556973 RTL5Q5HYW3 569 aaPredicted RBP13.61□□□□□ -0.23
LINC00239-201ENST00000556973 LINS1Q8NG48 757 aa13.61□□□□□ -0.23
LINC00239-201ENST00000556973 CCDC88AQ3V6T2 1871 aa13.61□□□□□ -0.23
LINC00239-201ENST00000556973 CWF19L2Q2TBE0 894 aaKnown RBP13.6□□□□□ -0.23
LINC00239-201ENST00000556973 DDX46Q7L014 1031 aaKnown RBP13.6□□□□□ -0.23
LINC00239-201ENST00000556973 SSH1Q8WYL5 1049 aa13.6□□□□□ -0.23
LINC00239-201ENST00000556973 PTPRCP08575 1304 aa13.6□□□□□ -0.23
LINC00239-201ENST00000556973 F6X3S4 739 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 H7C1W4 665 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 PDE8AO60658 829 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 BBOX1O75936 387 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 GCKRQ14397 625 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 GRIPAP1Q4V328 841 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 CCDC93Q567U6 631 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 CC2D2BQ6DHV5 1058 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 RTKN2Q8IZC4 609 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 ZBED9Q6R2W3 1325 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 CDHR2Q9BYE9 1310 aa13.59□□□□□ -0.23
LINC00239-201ENST00000556973 NFKBIEO00221 500 aa13.58□□□□□ -0.24
LINC00239-201ENST00000556973 BEND3Q5T5X7 828 aa13.58□□□□□ -0.24
LINC00239-201ENST00000556973 C9orf131Q5VYM1 1079 aa13.58□□□□□ -0.24
LINC00239-201ENST00000556973 JARID2Q92833 1246 aaPredicted RBP13.58□□□□□ -0.24
LINC00239-201ENST00000556973 TMX4Q9H1E5 349 aaPredicted RBP13.58□□□□□ -0.24
LINC00239-201ENST00000556973 SMC4Q9NTJ3 1288 aa13.58□□□□□ -0.24
LINC00239-201ENST00000556973 LTBP3Q9NS15 1303 aa13.58□□□□□ -0.24
LINC00239-201ENST00000556973 TAF1P21675 1872 aa13.57□□□□□ -0.24
LINC00239-201ENST00000556973 PPEF1O14829 653 aaPredicted RBP13.57□□□□□ -0.24
LINC00239-201ENST00000556973 LMNB1P20700 586 aa13.57□□□□□ -0.24
LINC00239-201ENST00000556973 BRPF1P55201 1214 aaPredicted RBP13.57□□□□□ -0.24
LINC00239-201ENST00000556973 GRAPQ13588 217 aa13.57□□□□□ -0.24
LINC00239-201ENST00000556973 SLC4A10Q6U841 1118 aa13.57□□□□□ -0.24
LINC00239-201ENST00000556973 ZNF784Q8NCA9 323 aaPredicted RBP13.57□□□□□ -0.24
LINC00239-201ENST00000556973 GRAPLQ8TC17 118 aaPredicted RBP13.57□□□□□ -0.24
LINC00239-201ENST00000556973 RNF181Q9P0P0 153 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms