RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 SLX4Q8IY92 1834 aa26.56■■□□□ 1.84
CCDC88C-210ENST00000555995 ALDH1B1P30837 517 aa26.56■■□□□ 1.84
CCDC88C-210ENST00000555995 ERFEQ4G0M1 354 aa26.56■■□□□ 1.84
CCDC88C-210ENST00000555995 PRPF40BQ6NWY9 871 aaKnown RBP26.56■■□□□ 1.84
CCDC88C-210ENST00000555995 FER1L6Q2WGJ9 1857 aa26.55■■□□□ 1.84
CCDC88C-210ENST00000555995 CRY2Q49AN0 593 aa26.55■■□□□ 1.84
CCDC88C-210ENST00000555995 NLRP10Q86W26 655 aa26.55■■□□□ 1.84
CCDC88C-210ENST00000555995 RIC3Q7Z5B4 369 aa26.54■■□□□ 1.84
CCDC88C-210ENST00000555995 TSPYL6Q8N831 410 aa26.54■■□□□ 1.84
CCDC88C-210ENST00000555995 RPGRQ92834 1020 aaKnown RBP26.54■■□□□ 1.84
CCDC88C-210ENST00000555995 ZC3H4Q9UPT8 1303 aaKnown RBP26.54■■□□□ 1.84
CCDC88C-210ENST00000555995 NLRP3Q96P20 1036 aa26.53■■□□□ 1.84
CCDC88C-210ENST00000555995 C9orf131Q5VYM1 1079 aa26.52■■□□□ 1.84
CCDC88C-210ENST00000555995 SH3TC1Q8TE82 1336 aa26.52■■□□□ 1.84
CCDC88C-210ENST00000555995 TRMT112Q9UI30 125 aaKnown RBP26.52■■□□□ 1.84
CCDC88C-210ENST00000555995 LTBP3Q9NS15 1303 aa26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 C21orf2O43822 256 aa26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 LMNB1P20700 586 aa26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 SLC10A5Q5PT55 438 aa26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 PHAXQ9H814 394 aaKnown RBP26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 GPBP1L1Q9HC44 474 aaPredicted RBP26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 RNF181Q9P0P0 153 aa26.51■■□□□ 1.83
CCDC88C-210ENST00000555995 TRIM28Q13263 835 aaKnown RBP26.5■■□□□ 1.83
CCDC88C-210ENST00000555995 ISCA1Q9BUE6 129 aa26.5■■□□□ 1.83
CCDC88C-210ENST00000555995 CCDC88AQ3V6T2 1871 aa26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 LAMB2P55268 1798 aa26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 ZNF521Q96K83 1311 aa26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 TIAM2Q8IVF5 1701 aa26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 HOXA10P31260 410 aaPredicted RBP26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 CCDC93Q567U6 631 aa26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 RBM17Q96I25 401 aaKnown RBP26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 DICER1Q9UPY3 1922 aaKnown RBP26.49■■□□□ 1.83
CCDC88C-210ENST00000555995 HSP90B1P14625 803 aaKnown RBP26.48■■□□□ 1.83
CCDC88C-210ENST00000555995 DIEXFQ68CQ4 756 aaKnown RBP26.48■■□□□ 1.83
CCDC88C-210ENST00000555995 TAOK3Q9H2K8 898 aa26.48■■□□□ 1.83
CCDC88C-210ENST00000555995 NFKBIEO00221 500 aa26.47■■□□□ 1.83
CCDC88C-210ENST00000555995 RASSF7Q02833 373 aa26.47■■□□□ 1.83
CCDC88C-210ENST00000555995 CC2D2BQ6DHV5 1058 aa26.47■■□□□ 1.83
CCDC88C-210ENST00000555995 CRAMP1Q96RY5 1269 aa26.47■■□□□ 1.83
CCDC88C-210ENST00000555995 ZNF219Q9P2Y4 722 aaPredicted RBP26.47■■□□□ 1.83
CCDC88C-210ENST00000555995 EXOSC9Q06265 439 aaKnown RBP26.46■■□□□ 1.83
CCDC88C-210ENST00000555995 GRIPAP1Q4V328 841 aa26.46■■□□□ 1.83
CCDC88C-210ENST00000555995 DDX60Q8IY21 1712 aaKnown RBP26.45■■□□□ 1.83
CCDC88C-210ENST00000555995 RTKN2Q8IZC4 609 aa26.45■■□□□ 1.82
CCDC88C-210ENST00000555995 ATP5J2-PTCD1G3V325 749 aa26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 SLC4A2P04920 1241 aa26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 NEXNQ0ZGT2 675 aa26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 KSR2Q6VAB6 950 aa26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 CCDC191Q8NCU4 936 aa26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 C7orf43Q8WVR3 580 aa26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 METTL22Q9BUU2 404 aaPredicted RBP26.44■■□□□ 1.82
CCDC88C-210ENST00000555995 E9PSI1 815 aa26.43■■□□□ 1.82
CCDC88C-210ENST00000555995 VAMP4O75379 141 aa26.43■■□□□ 1.82
CCDC88C-210ENST00000555995 MYD88Q99836 296 aa26.43■■□□□ 1.82
CCDC88C-210ENST00000555995 TMX4Q9H1E5 349 aaPredicted RBP26.43■■□□□ 1.82
CCDC88C-210ENST00000555995 KDM2BQ8NHM5 1336 aa26.42■■□□□ 1.82
CCDC88C-210ENST00000555995 SPINK5Q9NQ38 1064 aaPredicted RBP26.42■■□□□ 1.82
CCDC88C-210ENST00000555995 ZNF526Q8TF50 670 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-210ENST00000555995 CWC25Q9NXE8 425 aaPredicted RBP26.41■■□□□ 1.82
CCDC88C-210ENST00000555995 MAP3K2Q9Y2U5 619 aa26.41■■□□□ 1.82
CCDC88C-210ENST00000555995 HCLS1P14317 486 aaPredicted RBP26.4■■□□□ 1.82
CCDC88C-210ENST00000555995 FKBP4Q02790 459 aaKnown RBP eCLIP26.4■■□□□ 1.82
CCDC88C-210ENST00000555995 FLIIQ13045 1269 aa26.4■■□□□ 1.82
CCDC88C-210ENST00000555995 DDX46Q7L014 1031 aaKnown RBP26.4■■□□□ 1.82
CCDC88C-210ENST00000555995 ZBTB38Q8NAP3 1195 aaPredicted RBP26.4■■□□□ 1.82
CCDC88C-210ENST00000555995 PI4KAP2A4QPH2 592 aa26.39■■□□□ 1.82
CCDC88C-210ENST00000555995 PPEF1O14829 653 aaPredicted RBP26.39■■□□□ 1.82
CCDC88C-210ENST00000555995 PI4KAP1Q8N8J0 262 aa26.39■■□□□ 1.82
CCDC88C-210ENST00000555995 FAM89AQ96GI7 184 aa26.39■■□□□ 1.82
CCDC88C-210ENST00000555995 TCERG1O14776 1098 aaKnown RBP26.38■■□□□ 1.81
CCDC88C-210ENST00000555995 C3orf67Q6ZVT6 689 aa26.38■■□□□ 1.81
CCDC88C-210ENST00000555995 PCCAP05165 728 aaPredicted RBP26.37■■□□□ 1.81
CCDC88C-210ENST00000555995 FKBP5Q13451 457 aaPredicted RBP26.37■■□□□ 1.81
CCDC88C-210ENST00000555995 TMC4Q7Z404 712 aa26.37■■□□□ 1.81
CCDC88C-210ENST00000555995 PSMD1Q99460 953 aa26.37■■□□□ 1.81
CCDC88C-210ENST00000555995 ABCC4O15439 1325 aa26.37■■□□□ 1.81
CCDC88C-210ENST00000555995 IRS4O14654 1257 aaPredicted RBP26.36■■□□□ 1.81
CCDC88C-210ENST00000555995 BBOX1O75936 387 aa26.36■■□□□ 1.81
CCDC88C-210ENST00000555995 SF3B3Q15393 1217 aaKnown RBP26.35■■□□□ 1.81
CCDC88C-210ENST00000555995 SNED1Q8TER0 1413 aa26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 GRAPQ13588 217 aa26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 G2E3Q7L622 706 aa26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 SYNE4Q8N205 404 aa26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 GRAPLQ8TC17 118 aaPredicted RBP26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 ZNF428Q96B54 188 aa26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 CDHR2Q9BYE9 1310 aa26.34■■□□□ 1.81
CCDC88C-210ENST00000555995 MYH3P11055 1940 aa26.33■■□□□ 1.81
CCDC88C-210ENST00000555995 PRELPP51888 382 aa26.33■■□□□ 1.81
CCDC88C-210ENST00000555995 DPY19L2Q6NUT2 758 aa26.33■■□□□ 1.81
CCDC88C-210ENST00000555995 DNAAF4Q8WXU2 420 aa26.33■■□□□ 1.81
CCDC88C-210ENST00000555995 ATP6V0A2Q9Y487 856 aa26.33■■□□□ 1.81
CCDC88C-210ENST00000555995 GLTPD2A6NH11 291 aa26.32■■□□□ 1.8
CCDC88C-210ENST00000555995 C1QTNF8P60827 252 aa26.32■■□□□ 1.8
CCDC88C-210ENST00000555995 SLFN5Q08AF3 891 aa26.32■■□□□ 1.8
CCDC88C-210ENST00000555995 LRRC37AA6NMS7 1700 aa26.31■■□□□ 1.8
CCDC88C-210ENST00000555995 PDE8AO60658 829 aa26.31■■□□□ 1.8
CCDC88C-210ENST00000555995 RTL5Q5HYW3 569 aaPredicted RBP26.31■■□□□ 1.8
CCDC88C-210ENST00000555995 NEURL1BA8MQ27 555 aa26.3■■□□□ 1.8
CCDC88C-210ENST00000555995 IGKV5-2P06315 115 aa26.3■■□□□ 1.8
CCDC88C-210ENST00000555995 MIER1Q8N108 512 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms