RNA–Protein interactions for RNA: ENST00000555806.5

NEDD1-208, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-208ENST00000555806 RPGRQ92834 1020 aaKnown RBP23.85■■□□□ 1.41
NEDD1-208ENST00000555806 CRY2Q49AN0 593 aa23.84■■□□□ 1.41
NEDD1-208ENST00000555806 HYPKQ9NX55 129 aa23.84■■□□□ 1.41
NEDD1-208ENST00000555806 LTBP3Q9NS15 1303 aa23.84■■□□□ 1.41
NEDD1-208ENST00000555806 TCIRG1Q13488 830 aa23.83■■□□□ 1.41
NEDD1-208ENST00000555806 CCDC27Q2M243 656 aa23.83■■□□□ 1.41
NEDD1-208ENST00000555806 ANKRD13DQ6ZTN6 518 aa23.82■■□□□ 1.4
NEDD1-208ENST00000555806 NLRP10Q86W26 655 aa23.82■■□□□ 1.4
NEDD1-208ENST00000555806 WWC1Q8IX03 1113 aa23.82■■□□□ 1.4
NEDD1-208ENST00000555806 PLBD2Q8NHP8 589 aa23.82■■□□□ 1.4
NEDD1-208ENST00000555806 C7orf43Q8WVR3 580 aa23.82■■□□□ 1.4
NEDD1-208ENST00000555806 C16orf71Q8IYS4 520 aaPredicted RBP23.81■■□□□ 1.4
NEDD1-208ENST00000555806 C8orf58Q8NAV2 365 aa23.81■■□□□ 1.4
NEDD1-208ENST00000555806 OLFM4Q6UX06 510 aa23.8■■□□□ 1.4
NEDD1-208ENST00000555806 TSR2Q969E8 191 aaKnown RBP23.8■■□□□ 1.4
NEDD1-208ENST00000555806 RBM17Q96I25 401 aaKnown RBP23.8■■□□□ 1.4
NEDD1-208ENST00000555806 NLRP3Q96P20 1036 aa23.8■■□□□ 1.4
NEDD1-208ENST00000555806 RRAGCQ9HB90 399 aa23.8■■□□□ 1.4
NEDD1-208ENST00000555806 RNF123Q5XPI4 1314 aa23.8■■□□□ 1.4
NEDD1-208ENST00000555806 DICER1Q9UPY3 1922 aaKnown RBP23.79■■□□□ 1.4
NEDD1-208ENST00000555806 GLTPD2A6NH11 291 aa23.79■■□□□ 1.4
NEDD1-208ENST00000555806 C3orf67Q6ZVT6 689 aa23.79■■□□□ 1.4
NEDD1-208ENST00000555806 TRMT112Q9UI30 125 aaKnown RBP23.79■■□□□ 1.4
NEDD1-208ENST00000555806 SALL2Q9Y467 1007 aaPredicted RBP23.79■■□□□ 1.4
NEDD1-208ENST00000555806 TOMM70O94826 608 aa23.78■■□□□ 1.4
NEDD1-208ENST00000555806 HOXA10P31260 410 aaPredicted RBP23.78■■□□□ 1.4
NEDD1-208ENST00000555806 ZNF428Q96B54 188 aa23.78■■□□□ 1.4
NEDD1-208ENST00000555806 FKBP4Q02790 459 aaKnown RBP eCLIP23.77■■□□□ 1.4
NEDD1-208ENST00000555806 GOLGA2Q08379 1002 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 SLC10A5Q5PT55 438 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 CCDC30Q5VVM6 783 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 RTKN2Q8IZC4 609 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 FAM9BQ8IZU0 186 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 CHMP4AQ9BY43 222 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 SH3TC1Q8TE82 1336 aa23.77■■□□□ 1.4
NEDD1-208ENST00000555806 ATP5J2-PTCD1G3V325 749 aa23.76■■□□□ 1.39
NEDD1-208ENST00000555806 HCLS1P14317 486 aaPredicted RBP23.76■■□□□ 1.39
NEDD1-208ENST00000555806 NCBP3Q53F19 620 aaKnown RBP23.76■■□□□ 1.39
NEDD1-208ENST00000555806 DPY19L2Q6NUT2 758 aa23.76■■□□□ 1.39
NEDD1-208ENST00000555806 RIC3Q7Z5B4 369 aa23.76■■□□□ 1.39
NEDD1-208ENST00000555806 TSPYL6Q8N831 410 aa23.76■■□□□ 1.39
NEDD1-208ENST00000555806 CRAMP1Q96RY5 1269 aa23.76■■□□□ 1.39
NEDD1-208ENST00000555806 PHAXQ9H814 394 aaKnown RBP23.76■■□□□ 1.39
NEDD1-208ENST00000555806 SYNE4Q8N205 404 aa23.75■■□□□ 1.39
NEDD1-208ENST00000555806 ZNF277Q9NRM2 450 aaPredicted RBP23.75■■□□□ 1.39
NEDD1-208ENST00000555806 IL16Q14005 1332 aa23.75■■□□□ 1.39
NEDD1-208ENST00000555806 TCERG1O14776 1098 aaKnown RBP23.74■■□□□ 1.39
NEDD1-208ENST00000555806 PPEF1O14829 653 aaPredicted RBP23.74■■□□□ 1.39
NEDD1-208ENST00000555806 ISCA1Q9BUE6 129 aa23.74■■□□□ 1.39
NEDD1-208ENST00000555806 LAMB2P55268 1798 aa23.73■■□□□ 1.39
NEDD1-208ENST00000555806 HSPA6P17066 643 aa23.73■■□□□ 1.39
NEDD1-208ENST00000555806 CC2D2BQ6DHV5 1058 aa23.73■■□□□ 1.39
NEDD1-208ENST00000555806 RBM46Q8TBY0 533 aaKnown RBP23.72■■□□□ 1.39
NEDD1-208ENST00000555806 ABCC4O15439 1325 aa23.71■■□□□ 1.39
NEDD1-208ENST00000555806 VEGFAP15692 232 aaPredicted RBP23.71■■□□□ 1.39
NEDD1-208ENST00000555806 TWISTNBQ3B726 338 aaPredicted RBP23.71■■□□□ 1.39
NEDD1-208ENST00000555806 STK31Q9BXU1 1019 aa23.71■■□□□ 1.39
NEDD1-208ENST00000555806 TMX4Q9H1E5 349 aaPredicted RBP23.71■■□□□ 1.39
NEDD1-208ENST00000555806 DDX58O95786 925 aaKnown RBP23.7■■□□□ 1.38
NEDD1-208ENST00000555806 FAM89AQ96GI7 184 aa23.7■■□□□ 1.38
NEDD1-208ENST00000555806 SNED1Q8TER0 1413 aa23.69■■□□□ 1.38
NEDD1-208ENST00000555806 FANCIQ9NVI1 1328 aa23.69■■□□□ 1.38
NEDD1-208ENST00000555806 IARSP41252 1262 aaKnown RBP23.69■■□□□ 1.38
NEDD1-208ENST00000555806 RTL5Q5HYW3 569 aaPredicted RBP23.69■■□□□ 1.38
NEDD1-208ENST00000555806 DDX46Q7L014 1031 aaKnown RBP23.69■■□□□ 1.38
NEDD1-208ENST00000555806 WDR63Q8IWG1 891 aa23.69■■□□□ 1.38
NEDD1-208ENST00000555806 PSMD1Q99460 953 aa23.69■■□□□ 1.38
NEDD1-208ENST00000555806 MYD88Q99836 296 aa23.69■■□□□ 1.38
NEDD1-208ENST00000555806 WDR90Q96KV7 1748 aa23.69■■□□□ 1.38
NEDD1-208ENST00000555806 DDX60Q8IY21 1712 aaKnown RBP23.68■■□□□ 1.38
NEDD1-208ENST00000555806 TRIM28Q13263 835 aaKnown RBP23.68■■□□□ 1.38
NEDD1-208ENST00000555806 GRIPAP1Q4V328 841 aa23.68■■□□□ 1.38
NEDD1-208ENST00000555806 SLC51AQ86UW1 340 aa23.68■■□□□ 1.38
NEDD1-208ENST00000555806 DDNO94850 711 aaPredicted RBP23.67■■□□□ 1.38
NEDD1-208ENST00000555806 ATP6V0A2Q9Y487 856 aa23.66■■□□□ 1.38
NEDD1-208ENST00000555806 BBOX1O75936 387 aa23.65■■□□□ 1.38
NEDD1-208ENST00000555806 FSTL1Q12841 308 aa23.65■■□□□ 1.38
NEDD1-208ENST00000555806 GRAPQ13588 217 aa23.65■■□□□ 1.38
NEDD1-208ENST00000555806 GRAPLQ8TC17 118 aaPredicted RBP23.65■■□□□ 1.38
NEDD1-208ENST00000555806 JDP2Q8WYK2 163 aa23.65■■□□□ 1.38
NEDD1-208ENST00000555806 METTL22Q9BUU2 404 aaPredicted RBP23.65■■□□□ 1.38
NEDD1-208ENST00000555806 MAP3K2Q9Y2U5 619 aa23.65■■□□□ 1.38
NEDD1-208ENST00000555806 ZNF541Q9H0D2 1346 aa23.64■■□□□ 1.38
NEDD1-208ENST00000555806 POTECB2RU33 542 aa23.64■■□□□ 1.37
NEDD1-208ENST00000555806 IRS4O14654 1257 aaPredicted RBP23.64■■□□□ 1.37
NEDD1-208ENST00000555806 SMC1BQ8NDV3 1235 aa23.64■■□□□ 1.37
NEDD1-208ENST00000555806 LARGE2Q8N3Y3 721 aa23.63■■□□□ 1.37
NEDD1-208ENST00000555806 ZBTB38Q8NAP3 1195 aaPredicted RBP23.63■■□□□ 1.37
NEDD1-208ENST00000555806 CCDC191Q8NCU4 936 aa23.63■■□□□ 1.37
NEDD1-208ENST00000555806 CWC25Q9NXE8 425 aaPredicted RBP23.63■■□□□ 1.37
NEDD1-208ENST00000555806 PI4KAP2A4QPH2 592 aa23.62■■□□□ 1.37
NEDD1-208ENST00000555806 SLC4A2P04920 1241 aa23.62■■□□□ 1.37
NEDD1-208ENST00000555806 APLP1P51693 650 aa23.62■■□□□ 1.37
NEDD1-208ENST00000555806 EXOSC9Q06265 439 aaKnown RBP23.62■■□□□ 1.37
NEDD1-208ENST00000555806 KSR2Q6VAB6 950 aa23.62■■□□□ 1.37
NEDD1-208ENST00000555806 SP8Q8IXZ3 490 aa23.62■■□□□ 1.37
NEDD1-208ENST00000555806 PI4KAP1Q8N8J0 262 aa23.62■■□□□ 1.37
NEDD1-208ENST00000555806 SF3B3Q15393 1217 aaKnown RBP23.61■■□□□ 1.37
NEDD1-208ENST00000555806 MYH16Q9H6N6 1097 aa23.61■■□□□ 1.37
NEDD1-208ENST00000555806 TAF1P21675 1872 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms